Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012475

Physical Location & Seq

Genomic Coordinates Forward (+)

11201195 .. 11203967

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1078600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGACAGCATTGTAGATTCCCTAAATAGTGCATACCAAGAGTTCGTTGTTGCAGCAGTTAATGTGCTCGAATCCAAGGAAACTTCTGGTGGCCAGAAAACAGCAGCCACGGATGCTGCTCTTGAGAATTTTAAGCAGAAGTGGGAACTTTTCAGAGTCACTTGTGATCAAGCAGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATTGGCTCAGAGTGCCTGGTGGATGAGGCAACTGGCTTGGTGGCTGGGAAGTGTGGGCACAGCGCAACTGGTCTGCCACCCATTAGTGCGGTTCGGTTGGAACAGATGAGTAAAGCAGTTCGATGGCTTGTTATAGAACTTCAACATGGCTCTGGAACTGCTGCTGGTGCGGCACATTCTCATCCGTCAACTCCTTTTGATGGTAGATTCTCTGAAGATTCAGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009636 GO:0010035 GO:0016592 GO:0022622 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.37

Weight (kDa)

4.9

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11760
fragaria_vesca	FvH4_2g08450
malus_domestica	MD05G1068400.v1.1 MD10G1078600.v1.1
prunus_persica	Prupe.5G020100_v2.0.a1 Prupe.8G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263731 RchiOBHm_Chr6g0264001
rosa_laevigata	RLG00000014318
rosa_roxburghii	Rroxscaffold_176G00431190 Rroxscaffold_7G00204000
rosa_rugosa	Rorug06G0006100 Rorug06G0006200
rosa_samantha	Rh6AG125500 Rh6BG121800 Rh6CG120100 Rh6DG107900
rosa_wichuraiana	Rw6G010910 Rw6G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	293, 374
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	1 cut(s)	428
AluI	AGCT	1 cut(s)	428
Alw21I	GWGCWC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	4 cut(s)	53, 104, 116, 365
ApoI	RAATTY	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	65, 103, 116, 352
BccI	CCATC	2 cut(s)	321, 398
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	166
BisI	GCNGC	5 cut(s)	54, 105, 117, 366, 375
BlsI	GCNGC	5 cut(s)	55, 106, 118, 367, 376
Bme1390I	CCNGG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	75, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	2 cut(s)	241, 277
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	75, 108
BseGI	GGATG	3 cut(s)	118, 232, 385
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	241, 277
BseRI	GAGGAG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	4 cut(s)	65, 103, 116, 352
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	404
BsnI	GGCC	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	69, 264
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	2 cut(s)	293, 374
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	241, 277
BssECI	CCNNGG	2 cut(s)	75, 108
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	221
BstDEI	CTNAG	1 cut(s)	211
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	3 cut(s)	118, 232, 385
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 216, 371, 374
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	4 cut(s)	65, 103, 116, 352
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	118, 232, 385
CfoI	GCGC	1 cut(s)	269
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	8 cut(s)	93, 107, 210, 240, 248, 331, 354, 428
CviKI_1	RGCY	8 cut(s)	93, 107, 210, 240, 248, 331, 354, 428
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	353
FaiI	YATR	3 cut(s)	34, 338, 351
FatI	CATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	5 cut(s)	54, 105, 117, 366, 375
FokI	GGATG	3 cut(s)	125, 239, 372
Fsp4HI	GCNGC	5 cut(s)	54, 105, 117, 366, 375
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	5 cut(s)	54, 105, 117, 366, 375
GsaI	CCCAGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	6 cut(s)	17, 71, 156, 188, 411, 422
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	3 cut(s)	155, 214, 418
Hpy188III	TCNNGA	2 cut(s)	122, 357
Hpy8I	GTNNAC	1 cut(s)	393
HpyCH4V	TGCA	2 cut(s)	32, 53
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 216, 371, 374
HpyF3I	CTNAG	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	9 cut(s)	72, 107, 206, 222, 233, 234, 258, 342, 354
Lsp1109I	GCAGC	4 cut(s)	65, 103, 116, 352
LweI	GCATC	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	431
MhlI	GDGCHC	2 cut(s)	69, 264
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	2 cut(s)	165, 197
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	2 cut(s)	169, 223
Mox20I	TGGCCA	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	2 cut(s)	60, 132
Msp20I	TGGCCA	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	4 cut(s)	113, 216, 371, 374
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	353
NmuCI	GTSAC	1 cut(s)	157
PfeI	GAWTC	4 cut(s)	17, 71, 411, 422
PkrI	GCNGC	5 cut(s)	55, 106, 118, 367, 376
PleI	GAGTC	2 cut(s)	164, 196
PpsI	GAGTC	2 cut(s)	164, 196
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	60, 132
SatI	GCNGC	5 cut(s)	54, 105, 117, 366, 375
Sau3AI	GATC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	165, 197
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	69, 264
SetI	ASST	1 cut(s)	430
SfaNI	GCATC	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	293, 374
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	2 cut(s)	69, 325
TasI	AATT	1 cut(s)	127
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	4 cut(s)	17, 71, 411, 422
Tru1I	TTAA	2 cut(s)	60, 132
Tru9I	TTAA	2 cut(s)	60, 132
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	4 cut(s)	53, 104, 116, 365
Tsp45I	GTSAC	1 cut(s)	157
TspGWI	ACGGA	2 cut(s)	125, 378
XapI	RAATTY	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.