mediator of RNA polymerase II transcription subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Response_reg | PF00072 | 11 - 83 | 2.6e-13 | Response regulator receiver domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 174 |
| Acc36I | ACCTGC | 1 cut(s) | 174 |
| AciI | CCGC | 2 cut(s) | 124, 349 |
| AcoI | YGGCCR | 1 cut(s) | 88 |
| AcsI | RAATTY | 2 cut(s) | 161, 209 |
| AfaI | GTAC | 1 cut(s) | 282 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 290 |
| AluBI | AGCT | 3 cut(s) | 16, 258, 308 |
| AluI | AGCT | 3 cut(s) | 16, 258, 308 |
| Alw21I | GWGCWC | 1 cut(s) | 205 |
| Alw26I | GTCTC | 1 cut(s) | 194 |
| AoxI | GGCC | 2 cut(s) | 88, 350 |
| ApoI | RAATTY | 2 cut(s) | 161, 209 |
| BalI | TGGCCA | 1 cut(s) | 90 |
| BbsI | GAAGAC | 1 cut(s) | 147 |
| Bbv12I | GWGCWC | 1 cut(s) | 205 |
| BccI | CCATC | 1 cut(s) | 191 |
| BcoDI | GTCTC | 1 cut(s) | 194 |
| BfaI | CTAG | 2 cut(s) | 101, 311 |
| BfuAI | ACCTGC | 1 cut(s) | 174 |
| BisI | GCNGC | 2 cut(s) | 124, 350 |
| BlsI | GCNGC | 2 cut(s) | 125, 351 |
| BmsI | GCATC | 1 cut(s) | 312 |
| BpiI | GAAGAC | 1 cut(s) | 147 |
| BpuEI | CTTGAG | 1 cut(s) | 189 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 357 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 290 |
| Bse1I | ACTGG | 2 cut(s) | 140, 278 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 290 |
| BseMII | CTCAG | 1 cut(s) | 69 |
| BseNI | ACTGG | 2 cut(s) | 140, 278 |
| BshFI | GGCC | 2 cut(s) | 90, 352 |
| BsiHKAI | GWGCWC | 1 cut(s) | 205 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 290 |
| BsmAI | GTCTC | 1 cut(s) | 194 |
| BsnI | GGCC | 2 cut(s) | 90, 352 |
| Bsp1286I | GDGCHC | 1 cut(s) | 205 |
| Bsp143I | GATC | 3 cut(s) | 37, 94, 316 |
| BspACI | CCGC | 2 cut(s) | 124, 349 |
| BspANI | GGCC | 2 cut(s) | 90, 352 |
| BspCNI | CTCAG | 1 cut(s) | 70 |
| BspHI | TCATGA | 1 cut(s) | 40 |
| BspMI | ACCTGC | 1 cut(s) | 174 |
| BsrI | ACTGG | 2 cut(s) | 140, 278 |
| BssMI | GATC | 3 cut(s) | 37, 94, 316 |
| Bst6I | CTCTTC | 1 cut(s) | 3 |
| BstC8I | GCNNGC | 1 cut(s) | 270 |
| BstDEI | CTNAG | 1 cut(s) | 78 |
| BstKTI | GATC | 3 cut(s) | 40, 97, 319 |
| BstMAI | GTCTC | 1 cut(s) | 194 |
| BstMBI | GATC | 3 cut(s) | 37, 94, 316 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 22, 368 |
| BstV2I | GAAGAC | 1 cut(s) | 147 |
| BsuRI | GGCC | 2 cut(s) | 90, 352 |
| BtsIMutI | CAGTG | 2 cut(s) | 60, 147 |
| BveI | ACCTGC | 1 cut(s) | 174 |
| Cac8I | GCNNGC | 1 cut(s) | 270 |
| CciI | TCATGA | 1 cut(s) | 40 |
| Csp6I | GTAC | 1 cut(s) | 281 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 123, 158 |
| CviAII | CATG | 3 cut(s) | 41, 92, 127 |
| CviJI | RGCY | 8 cut(s) | 16, 25, 90, 123, 258, 268, 308, 352 |
| CviKI_1 | RGCY | 8 cut(s) | 16, 25, 90, 123, 258, 268, 308, 352 |
| CviQI | GTAC | 1 cut(s) | 281 |
| DdeI | CTNAG | 1 cut(s) | 78 |
| DpnI | GATC | 3 cut(s) | 39, 96, 318 |
| DpnII | GATC | 3 cut(s) | 37, 94, 316 |
| EaeI | YGGCCR | 1 cut(s) | 88 |
| Eam1104I | CTCTTC | 1 cut(s) | 3 |
| EarI | CTCTTC | 1 cut(s) | 3 |
| EcoRI | GAATTC | 1 cut(s) | 209 |
| FaeI | CATG | 3 cut(s) | 44, 95, 130 |
| FaiI | YATR | 8 cut(s) | 42, 53, 74, 93, 128, 149, 261, 379 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 32, 337, 369 |
| FatI | CATG | 3 cut(s) | 40, 91, 126 |
| Fnu4HI | GCNGC | 2 cut(s) | 124, 350 |
| Fsp4HI | GCNGC | 2 cut(s) | 124, 350 |
| FspBI | CTAG | 2 cut(s) | 101, 311 |
| GluI | GCNGC | 2 cut(s) | 124, 350 |
| HaeIII | GGCC | 2 cut(s) | 90, 352 |
| Hin1II | CATG | 3 cut(s) | 44, 95, 130 |
| HincII | GTYRAC | 1 cut(s) | 49 |
| HindII | GTYRAC | 1 cut(s) | 49 |
| HindIII | AAGCTT | 1 cut(s) | 14 |
| HinfI | GANTC | 1 cut(s) | 177 |
| HpaI | GTTAAC | 1 cut(s) | 49 |
| Hpy166II | GTNNAC | 1 cut(s) | 49 |
| Hpy188I | TCNGA | 3 cut(s) | 160, 228, 321 |
| Hpy188III | TCNNGA | 2 cut(s) | 41, 206 |
| Hpy8I | GTNNAC | 1 cut(s) | 49 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 2 cut(s) | 217, 377 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 22, 368 |
| HpyF3I | CTNAG | 1 cut(s) | 78 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| Hsp92II | CATG | 3 cut(s) | 44, 95, 130 |
| KspAI | GTTAAC | 1 cut(s) | 49 |
| Kzo9I | GATC | 3 cut(s) | 37, 94, 316 |
| LpnPI | CCDG | 8 cut(s) | 90, 153, 169, 282, 291, 339, 348, 372 |
| LweI | GCATC | 1 cut(s) | 312 |
| MaeI | CTAG | 2 cut(s) | 101, 311 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MaeIII | GTNAC | 1 cut(s) | 249 |
| MalI | GATC | 3 cut(s) | 39, 96, 318 |
| MboI | GATC | 3 cut(s) | 37, 94, 316 |
| MboII | GAAGA | 4 cut(s) | 17, 20, 89, 147 |
| MhlI | GDGCHC | 1 cut(s) | 205 |
| MlsI | TGGCCA | 1 cut(s) | 90 |
| MluCI | AATT | 3 cut(s) | 135, 161, 209 |
| MluNI | TGGCCA | 1 cut(s) | 90 |
| MnlI | CCTC | 3 cut(s) | 68, 109, 234 |
| Mox20I | TGGCCA | 1 cut(s) | 90 |
| MscI | TGGCCA | 1 cut(s) | 90 |
| MseI | TTAA | 3 cut(s) | 33, 48, 165 |
| Msp20I | TGGCCA | 1 cut(s) | 90 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 22, 368 |
| NdeII | GATC | 3 cut(s) | 37, 94, 316 |
| NlaIII | CATG | 3 cut(s) | 44, 95, 130 |
| PagI | TCATGA | 1 cut(s) | 40 |
| PaqCI | CACCTGC | 1 cut(s) | 174 |
| PfeI | GAWTC | 1 cut(s) | 177 |
| PkrI | GCNGC | 2 cut(s) | 125, 351 |
| RsaI | GTAC | 1 cut(s) | 282 |
| RsaNI | GTAC | 1 cut(s) | 281 |
| SaqAI | TTAA | 3 cut(s) | 33, 48, 165 |
| SatI | GCNGC | 2 cut(s) | 124, 350 |
| Sau3AI | GATC | 3 cut(s) | 37, 94, 316 |
| SduI | GDGCHC | 1 cut(s) | 205 |
| SetI | ASST | 6 cut(s) | 18, 188, 226, 260, 304, 310 |
| SfaNI | GCATC | 1 cut(s) | 312 |
| SmlI | CTYRAG | 1 cut(s) | 204 |
| SmoI | CTYRAG | 1 cut(s) | 204 |
| Sse9I | AATT | 3 cut(s) | 135, 161, 209 |
| SsiI | CCGC | 2 cut(s) | 124, 349 |
| SspMI | CTAG | 2 cut(s) | 101, 311 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TasI | AATT | 3 cut(s) | 135, 161, 209 |
| TauI | GCSGC | 2 cut(s) | 126, 352 |
| TfiI | GAWTC | 1 cut(s) | 177 |
| Tru1I | TTAA | 3 cut(s) | 33, 48, 165 |
| Tru9I | TTAA | 3 cut(s) | 33, 48, 165 |
| TscAI | CASTG | 2 cut(s) | 67, 147 |
| TspDTI | ATGAA | 3 cut(s) | 98, 143, 351 |
| TspRI | CASTG | 2 cut(s) | 67, 147 |
| XapI | RAATTY | 2 cut(s) | 161, 209 |
| XspI | CTAG | 2 cut(s) | 101, 311 |