zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 21 - 117 | 4.5e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 3 cut(s) | 95, 186, 202 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 59, 88, 213 |
| AflIII | ACRYGT | 1 cut(s) | 178 |
| AgsI | TTSAA | 4 cut(s) | 158, 251, 262, 284 |
| AjnI | CCWGG | 1 cut(s) | 81 |
| AluBI | AGCT | 1 cut(s) | 131 |
| AluI | AGCT | 1 cut(s) | 131 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 275 |
| Ama87I | CYCGRG | 1 cut(s) | 5 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 255, 287 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 195 |
| AvaI | CYCGRG | 1 cut(s) | 5 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 30 |
| BciT130I | CCWGG | 1 cut(s) | 83 |
| Bme1390I | CCNGG | 1 cut(s) | 83 |
| BmeT110I | CYCGRG | 1 cut(s) | 5 |
| BmrFI | CCNGG | 1 cut(s) | 83 |
| BpuEI | CTTGAG | 1 cut(s) | 105 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 77, 107 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 59, 88, 213 |
| Bse1I | ACTGG | 1 cut(s) | 192 |
| BseBI | CCWGG | 1 cut(s) | 83 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 59, 88, 213 |
| BseNI | ACTGG | 1 cut(s) | 192 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BsiHKCI | CYCGRG | 1 cut(s) | 5 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 59, 88, 213 |
| BsoBI | CYCGRG | 1 cut(s) | 5 |
| BsrI | ACTGG | 1 cut(s) | 192 |
| Bst2UI | CCWGG | 1 cut(s) | 83 |
| Bst4CI | ACNGT | 1 cut(s) | 213 |
| BstC8I | GCNNGC | 1 cut(s) | 46 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 137 |
| BstNI | CCWGG | 1 cut(s) | 83 |
| BstNSI | RCATGY | 3 cut(s) | 164, 182, 314 |
| BstSCI | CCNGG | 1 cut(s) | 81 |
| BtsIMutI | CAGTG | 2 cut(s) | 218, 273 |
| Cac8I | GCNNGC | 1 cut(s) | 46 |
| CaiI | CAGNNNCTG | 1 cut(s) | 275 |
| Csp6I | GTAC | 3 cut(s) | 94, 185, 201 |
| CviAII | CATG | 4 cut(s) | 54, 161, 179, 311 |
| CviJI | RGCY | 4 cut(s) | 44, 131, 206, 340 |
| CviKI_1 | RGCY | 4 cut(s) | 44, 131, 206, 340 |
| CviQI | GTAC | 3 cut(s) | 94, 185, 201 |
| Eco88I | CYCGRG | 1 cut(s) | 5 |
| EcoRII | CCWGG | 1 cut(s) | 81 |
| FaeI | CATG | 4 cut(s) | 57, 164, 182, 314 |
| FaiI | YATR | 9 cut(s) | 27, 55, 153, 162, 180, 305, 312, 336, 359 |
| FatI | CATG | 4 cut(s) | 53, 160, 178, 310 |
| Hin1II | CATG | 4 cut(s) | 57, 164, 182, 314 |
| HinfI | GANTC | 2 cut(s) | 217, 251 |
| Hpy188I | TCNGA | 3 cut(s) | 22, 222, 256 |
| HpyCH4III | ACNGT | 1 cut(s) | 213 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 4 cut(s) | 48, 164, 243, 269 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 137 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92II | CATG | 4 cut(s) | 57, 164, 182, 314 |
| LpnPI | CCDG | 5 cut(s) | 44, 58, 68, 95, 173 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 2 cut(s) | 113, 271 |
| MluCI | AATT | 1 cut(s) | 195 |
| MmeI | TCCRAC | 1 cut(s) | 79 |
| MnlI | CCTC | 2 cut(s) | 79, 283 |
| MroXI | GAANNNNTTC | 1 cut(s) | 195 |
| MspR9I | CCNGG | 1 cut(s) | 83 |
| MvaI | CCWGG | 1 cut(s) | 83 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 137 |
| NlaIII | CATG | 4 cut(s) | 57, 164, 182, 314 |
| NmuCI | GTSAC | 2 cut(s) | 113, 271 |
| NspI | RCATGY | 3 cut(s) | 164, 182, 314 |
| PaeR7I | CTCGAG | 1 cut(s) | 5 |
| PciI | ACATGT | 1 cut(s) | 178 |
| PdmI | GAANNNNTTC | 1 cut(s) | 195 |
| PfeI | GAWTC | 2 cut(s) | 217, 251 |
| PscI | ACATGT | 1 cut(s) | 178 |
| Psp6I | CCWGG | 1 cut(s) | 81 |
| PspGI | CCWGG | 1 cut(s) | 81 |
| PspXI | VCTCGAGB | 1 cut(s) | 5 |
| PstNI | CAGNNNCTG | 1 cut(s) | 275 |
| RsaI | GTAC | 3 cut(s) | 95, 186, 202 |
| RsaNI | GTAC | 3 cut(s) | 94, 185, 201 |
| ScrFI | CCNGG | 1 cut(s) | 83 |
| SetI | ASST | 2 cut(s) | 99, 133 |
| Sfr274I | CTCGAG | 1 cut(s) | 5 |
| SlaI | CTCGAG | 1 cut(s) | 5 |
| SmlI | CTYRAG | 2 cut(s) | 5, 120 |
| SmoI | CTYRAG | 2 cut(s) | 5, 120 |
| Sse9I | AATT | 1 cut(s) | 195 |
| StyD4I | CCNGG | 1 cut(s) | 81 |
| TaaI | ACNGT | 1 cut(s) | 213 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 1 cut(s) | 6 |
| TasI | AATT | 1 cut(s) | 195 |
| TatI | WGTACW | 1 cut(s) | 184 |
| TfiI | GAWTC | 2 cut(s) | 217, 251 |
| TscAI | CASTG | 2 cut(s) | 218, 280 |
| TseFI | GTSAC | 2 cut(s) | 113, 271 |
| Tsp45I | GTSAC | 2 cut(s) | 113, 271 |
| TspDTI | ATGAA | 2 cut(s) | 224, 323 |
| TspRI | CASTG | 2 cut(s) | 218, 280 |
| XceI | RCATGY | 3 cut(s) | 164, 182, 314 |
| XhoI | CTCGAG | 1 cut(s) | 5 |
| XmnI | GAANNNNTTC | 1 cut(s) | 195 |