pycom17g24980

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
23187949 .. 23193081
5133 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g24980.5

Sequence Viewer

Length: 4785 bp
ATGAGGTCTAAGTCATACACTGCCTTTGAGACTTTTGATGCCATCGATCTGCTAAGACCTTTGATTATAGCAGGGGTGATAACTCCGATCCACTTTGGTTGGGGAATGGGGGCTGCAGCGATTGGGAGGAGTGGTGTACCACCAGTAAGGTTGGTCGATTGGTTGCATTGCTGTGGATACTATAGTTGTGTTGATTTTTTTGGTTATTTACAGAAAGTAAAGGTTTCTTCTACGTCTCAGGCTGGGCGAGTGGGGCAGAGGTGTTACAGTGTGATGGCGACTAGTGGGGTGGATGAACTGGTGGTTCAACTGAACCAAACACTGGAGATATCAACTATGGAGCAGGGAGTTAAATTGGTTGGGAAAGTATTTACGCAGAAACCAGTGAACAAATGGGGAGTCAGGAATATTCTTAGAGCGGCTTGGAAAGAATTGGGTGAGGTGGACATAAAATGGGTAAGGGAGAATGTATTTATTATTGCGGTCAAAGATGAAAATGTGGCTTCAAAGATCATTGAGCAGGTCCCCTGGGCAGTGATGAAGAAGGTGTTCTCGGTCGTGAAATGGCCTCCGGAGCTCGCCTTAGAGGAGTTGGAGTTAAATGCTGTTCCATTTTGGACTCAAATAAGGGGAATCCCGCTGGGCTTAGCCTCTGTTGAGAATGTTCAGCGTGTAATCAAAGAGGCTGGGAAATTTATAGTCATGGAGGATCCCGGACACGCTCGTGGATTTGTACGAGTAAGAATCTTAGTTGATACGGAGAAGCCATTATTCAAAGGTTGTTGGATTCGAAGGGAGTCAAATAAGGAAACCTGGGTGGAATTTCGGTATGAACGGCTTCAAGATTTCTGCTACAAGTGTGGACGGATTGGGCATATCAATACAGAATGCTCCGCTGAGAGGCCTGGAGAAGGGGAGGTAGCGTATGGAGAGTGGATTAAGTGTGTGGGCAGGGGGGAACGCCGGCAGGCTGGGGCGGTGCGCGGTCCGGGTTTCATGTCTGCACAGAATCAAGGTAGATTACGGATGTCAAACTCACAAAGAATGGAGAGTAATCAAACCACTGAGACTGGGGGAGCATCTCAGAGTCGTGGCAAAGGTCAAAAAAAATGGCGTAGAAGAATGCGGGGGGAGGGAGAGGATTCGTCTTCTTGCTCTGAAATGGAAAGCATCAAAACAGTGGGTGAAGGACAATCGGGCGATGTCCAGGGGGGCAATGACACTCTGTCCGCCCAGGGTGAGGACCCAATCTGGGGCAGTAAAAGAAGTGGGGAAGCACAGGATTTGGTGCTCACTCAAGCTCCACAGAATAAACTCAAGGGCCCGGTTACGGAGGAGAACTGCCAAGGTAGGGAGGCAGAGATAGGAAGGAGGTTAAACAGCAAGGATGGAGGGCTAACGATGGAAAGAGCGAACCGTACGGCGGAGGAAAATAAGGAAGAAATAAGTGAGAATACTGGAAGACAGGATGTAATGGAAGGGGGGTCGGACTTTGATAAAGGTAGGATGGTGACACGGAAGGCGGGCAAGCCAGCCATGAGTTATATCTCCTGGAACTGCCGTGGGCTCGGGTCCAACACGACAGTCAGGGCTCTTCATGCGCTTATTCGCAAAAAGAAACCCTCTATGATCTTTTTATCGGAGACTAAGATGAAAGATCATAGAATTCTAGGGGTGAGGAGGAGATTGGGTTATGTTCATGGCTTTGATGTTTCGCCAGTTGGAAGTTCTGGAGGATTGAGCTTGTGGTGGGAGGACAATCTGGAGGTTAATATTATCTTTTCGTCCAAGCATATTATTGATGCTGTGATGAGAATTAAAGGGCAAACGCATTGGAGTCGGATTACGGGTGTGTATAGAACGCCGTATAGAGGTGAGAAAAATCTGTTTTGGGAATGGATGGTTAACCACTTTACCCCCACGGACATTCCTTGGATTTGTGGCTGGGATTTCAACGAATTCCTGTGGGATCATGAGAAGTCTGGTGGAGTTGAGGTTTTGTACAACAGGCCTAGGTTCTTAGAAGAGTTTCTGTCTTCCTCTCAGTTGATGGACTTGGGTTTCAATGGGCCGGCCTTTACGTGGAGAGGGATGAGAAAAAGGGATTGGGTGGAGGAGAGGTTAGACAGGGTCATGGCGAATGAGAAGTGGCAGCAACTCTGGCCGAACTCCCAAGTTATGCATGACACGGTTTTATCATCGGACCACTGCCCAGTTATTCTTATTTCCAATATTGAAGGGCAGAAAGGAAGGAAGATGTTCAGGTTTGAGGCGTATTGGGTCTCGGAGGAAGAGTGTAAGAATTTGGTGGAAAAGTGCTGGGATCGGCGGCATAATGGCAGCCCTGTGTATAGGTGGGTGAGATCTTTAAACGATTGCCGCTATCGTTTAAGCAGGTGGAATCACACTAAGTTTATGGGGCGAGGTAGCAGGATCCATGATCTTCTTTCCCAGTTAGATTTGCTCCAGCGGGACTGGGGTCCAAACTATGATGAGATAAGGGAAATATCTCGGCGGATTGATGAGTTAAGACTCCAAGAGGAGAGTTATTGGTGCCAGCGATCGAGGGTAAAATGGTTGAGGGAGGGGGATGCTAACACTCAGTTTTTTCACTCTTCAACCCTTCAGAGGCGGAGGAGAAATAAGATAGTGAAGCTTAGGGATGAGAATGGGAACTGGGTGGAGAGTCCGGCTCAGGTGCGTCAATTGGTGGATAATCACTTCACTTCAGTTTTTAGCTCGGCAGGGGATCGTAACTGGGGGTCGCTCCTAGATTGCATTAATCCATCGGTCTCGCCAGAAATGAATGAGGCGCTAATTGCACCAGTCACGGAGGAGGAGATAAAGGCGGCGGCTGGGAATATGGGAGGGCTGAAGGCTCCTGGCCCCGATGGTTTCCAGGGGATATTTTATCAGACATACTGGGAGATTGTGCGGGAGGGTGTTTCTGCTTTGGTTAGAGATTTGATTCAGGATGCTGCGGGTTCGAGTTTGATAAATCAGACTCATGTGGTGCTGATTCCCAAAGTCCTGAATCCGGAAGTTGTGTCGCAATTCAGACCGATTAGCCTGTGCAACTACTCGTACAAAATTCTGTCAAAGATTCTTGCTAACCGGTTGAAGGTATTATTACCTAAAATCATCTCTCCTTCTCAGAATGCTTTTGTGACGGGTAGACAAATTCAGGATTGTATTGGCATAGCCCATGAGATGTTTCATTATCTGAAGGGAAGGAAAGCTCGGAATAGATTTGAAATGGGGATTAAACTTGATATGCAGAAGGCGTATGATAGGGTTGAATGGGATTTTTTGGATGCGGTAATGGATAGAATGGGTTTTTGCAGTAGATGGAGATCGTTAATTAGTGGTTGTGTTTCGTCTGTGAAGTTCGCTGTTCTCCTAAATGGGCAGGCTGGAAAGTCCTTTGCTCCCTCGAGGGGTCTCCGTCAGGGGGATCCTCTTTCTCCTTATTTATTTATTTTGGTGGGGGAAGTTCTATCCAAACTGATTCAGGGTGCGGTTGACCAAAGGAGGTTGGAGGGTGTCAAGATAGGTGGATCCGGACCCGTGATTTCTCACCTCTTCTTTGCGGATGATACCCTTCTGTTTTTGCGGGCTGATATGAAAAACTGCGGGAATTTAAGACATCTGCTGGACAAGTTTTGTGTGGCATCGGGGCAGAAGGTAAATTTGGAGAAATCCAGTGTAATTTTTGGGGCTAACGTTCCGAAGGTGAATGCTGAGCAGATGGGGAACGCCCTTGATATGAAGGTAGTAATCAATCCGGGAACATATTTGGGGGTCCCTACCATATGGGGTCGCGCTGTTTGTAAGGAATTGGATGCGTTGGTGGCTGGGTTTTGGTGGGGATGCAAGGAGGGAGCCCTCAAGATTCACTGGGTTTCAAAGGAGGTTTTGGGTTTGCCAAAAGACATGGGTGGTTTAGGCTTCAGAAATTTTCAGGAATTTAATGATGCTCTGCTTGCTAAACAGTGCTGGCGTTTAATCACGGAACCGGATTCGCTATGGGCTAAGGTGATTAAGGCTCGGTATTTTCCACATAGCTCGATCTGGGATGCAAAGAAGGGTGGGCGGACCTCTTGGGCGTGGAGCAGCCTCATCTGTGGCAGGGACCTGATTAGGGAGGGCTCACATTGGCAGATCTTGGGTAGTCAGGAGGTGCGGGTGTGGCAGGATAGGTGGCTTCCATCCTTGCCCCGTGGACACCCGGAACCGGTTGGCCAGGTTGCGGTTACTCCCAGTTTAAGGGTCAGTGCACTTATCTGTCCGGAGTCGGGGCGGTGGAATATTAACTTTTTACAGCCTTTCATATCGGGGGAGGCTATGCAGGCAATTGAGGAGACGTCTCTTGGAGATTTAAGTCGTAAAGATAGACTTATATGGGATACGAGTAAGAACGGCTCTTATTCGGTCAAGTCAAGATACAGATGGCTGCAAGGAAGATCACTGGCGAGAAGGGATTTGCGTCGGCCTTCTGTTCGTGGGGTTCCCAAAGCGTTTTGGAAGGTGATCTGGAAGCTGGAGGTGCCCCCCAAGTTACGGCATTTCTTGTGGCTTTCTGTTCATAATTGTCTTCCTACTCGGGAGGCACTGTTCCGACGAAGGTCCTCTCAAACCTCTTCTTGTCCTATTTGCTGCTGCCATGATGAAACCATTGAGCACATTTTCCTTTCCTGCTCTTGGGTTGAGCCAATTTGGTTTGGAGGGGCATTGGGTTATAAAATGGATCGTCTTTCTCTCCCTTCTTGGTCGGACTGGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1595

Amino Acids

181.48

Weight (kDa)

9.26

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4740
AarI CACCTGC 1 cut(s) 2385
AatII GACGTC 1 cut(s) 4367
AbsI CCTCGAGG 1 cut(s) 3433
Acc36I ACCTGC 2 cut(s) 511, 2385
AccB1I GGYRCC 2 cut(s) 2553, 4546
AccB7I CCANNNNNTGG 1 cut(s) 322
AccBSI CCGCTC 1 cut(s) 419
AccI GTMKAC 1 cut(s) 3175
AccII CGCG 2 cut(s) 984, 3822
AccIII TCCGGA 4 cut(s) 571, 3037, 3560, 4288
AclI AACGTT 1 cut(s) 3723
AcoI YGGCCR 2 cut(s) 2162, 4240
AcuI CTGAAG 5 cut(s) 2609, 2712, 2894, 3245, 3934
AcyI GRCGYC 1 cut(s) 4364
AfaI GTAC 5 cut(s) 138, 735, 1420, 2003, 3086
AgeI ACCGGT 2 cut(s) 3114, 4234
AhdI GACNNNNNGTC 1 cut(s) 1225
AhlI ACTAGT 1 cut(s) 281
AjnI CCWGG 9 cut(s) 527, 812, 904, 1206, 1233, 1550, 2881, 2898, 4242
AjuI GAANNNNNNNTTGG 4 cut(s) 2089, 2121, 3674, 3706
AleI CACNNNNGTG 1 cut(s) 723
AloI GAACNNNNNNTCC 2 cut(s) 4598, 4630
AluBI AGCT 8 cut(s) 577, 1301, 1743, 2656, 2739, 3239, 4065, 4540
AluI AGCT 8 cut(s) 577, 1301, 1743, 2656, 2739, 3239, 4065, 4540
Alw21I GWGCWC 4 cut(s) 579, 1293, 4279, 4683
Alw26I GTCTC 9 cut(s) 23, 240, 1061, 1637, 2287, 2797, 3446, 4355, 4371
Alw44I GTGCAC 1 cut(s) 4275
Ama87I CYCGRG 3 cut(s) 1568, 3433, 4602
Aor13HI TCCGGA 4 cut(s) 571, 3037, 3560, 4288
ApaI GGGCCC 1 cut(s) 1325
ApaLI GTGCAC 1 cut(s) 4275
ApeKI GCWGC 9 cut(s) 113, 116, 2152, 2340, 2978, 4113, 4453, 4656, 4659
ArsI GACNNNNNNTTYG 2 cut(s) 384, 416
AseI ATTAAT 1 cut(s) 2781
AsiGI ACCGGT 2 cut(s) 3114, 4234
Asp700I GAANNNNTTC 4 cut(s) 548, 837, 2028, 2258
AspA2I CCTAGG 1 cut(s) 2012
AspLEI GCGC 4 cut(s) 984, 1603, 2815, 3824
AsuC2I CCSGG 5 cut(s) 714, 990, 1325, 3786, 4229
AsuII TTCGAA 1 cut(s) 790
AvaI CYCGRG 3 cut(s) 1568, 3433, 4602
AvrII CCTAGG 1 cut(s) 2012
BaeGI GKGCMC 3 cut(s) 1325, 4279, 4551
BaeI ACNNNNGTAYC 2 cut(s) 169, 202
BalI TGGCCA 1 cut(s) 4242
BamHI GGATCC 4 cut(s) 709, 2433, 3454, 3557
BanI GGYRCC 2 cut(s) 2553, 4546
BanII GRGCYC 6 cut(s) 579, 1325, 1569, 1594, 3886, 4151
BauI CACGAG 1 cut(s) 723
BbsI GAAGAC 4 cut(s) 1140, 1468, 2028, 4586
Bbv12I GWGCWC 4 cut(s) 579, 1293, 4279, 4683
BbvI GCAGC 9 cut(s) 100, 128, 2164, 2352, 2965, 4125, 4440, 4643, 4646
BceAI ACGGC 6 cut(s) 851, 1437, 1545, 1849, 4435, 4577
BcgI CGANNNNNNTGC 2 cut(s) 1820, 1854
BciT130I CCWGG 9 cut(s) 529, 814, 906, 1208, 1235, 1552, 2883, 2900, 4244
BciVI GTATCC 2 cut(s) 170, 4399
BcnI CCSGG 5 cut(s) 714, 990, 1325, 3786, 4229
BcoDI GTCTC 9 cut(s) 23, 240, 1061, 1637, 2287, 2797, 3446, 4355, 4371
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 4 cut(s) 282, 1670, 2013, 2771
BfmI CTRYAG 2 cut(s) 114, 181
BfoI RGCGCY 1 cut(s) 2816
BfuAI ACCTGC 2 cut(s) 511, 2385
BfuI GTATCC 2 cut(s) 170, 4399
BglII AGATCT 2 cut(s) 2363, 4161
BlnI CCTAGG 1 cut(s) 2012
BlpI GCTNAGC 2 cut(s) 646, 3741
BmeRI GACNNNNNGTC 1 cut(s) 1225
BmeT110I CYCGRG 3 cut(s) 1568, 3433, 4602
BmrI ACTGGG 9 cut(s) 1080, 2207, 2446, 2485, 2686, 2767, 2932, 3907, 4254
BmuI ACTGGG 9 cut(s) 1080, 2207, 2446, 2485, 2686, 2767, 2932, 3907, 4254
BoxI GACNNNNGTC 2 cut(s) 2478, 4624
BpiI GAAGAC 4 cut(s) 1140, 1468, 2028, 4586
BplI GAGNNNNNCTC 2 cut(s) 2677, 2709
BpmI CTGGAG 6 cut(s) 344, 927, 1752, 1784, 2450, 4562
Bpu10I CCTNAGC 3 cut(s) 2657, 2694, 4032
Bpu1102I GCTNAGC 2 cut(s) 646, 3741
Bpu14I TTCGAA 1 cut(s) 790
BpuEI CTTGAG 3 cut(s) 1281, 1301, 3872
BpuMI CCSGG 5 cut(s) 714, 990, 1325, 3786, 4229
Bsa29I ATCGAT 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 2082
BsaBI GATNNNNATC 1 cut(s) 3352
BsaHI GRCGYC 1 cut(s) 4364
BsaI GGTCTC 3 cut(s) 2287, 2797, 3446
BsaWI WCCGGW 7 cut(s) 571, 3037, 3114, 3560, 4015, 4234, 4288
Bse118I RCCGGY 4 cut(s) 963, 2071, 3114, 4234
Bse3DI GCAATG 2 cut(s) 166, 1222
Bse8I GATNNNNATC 1 cut(s) 3352
BseAI TCCGGA 4 cut(s) 571, 3037, 3560, 4288
BseBI CCWGG 9 cut(s) 529, 814, 906, 1208, 1235, 1552, 2883, 2900, 4244
BseCI ATCGAT 1 cut(s) 45
BseJI GATNNNNATC 1 cut(s) 3352
BseMI GCAATG 2 cut(s) 166, 1222
BseMII CTCAG 9 cut(s) 251, 888, 1056, 1097, 2057, 2615, 2708, 3167, 3732
BseSI GKGCMC 3 cut(s) 1325, 4279, 4551
BseXI GCAGC 9 cut(s) 100, 128, 2164, 2352, 2965, 4125, 4440, 4643, 4646
BseYI CCCAGC 8 cut(s) 242, 640, 686, 971, 1944, 2319, 2855, 3854
BsgI GTGCAG 1 cut(s) 987
Bsh1236I CGCG 2 cut(s) 984, 3822
Bsh1285I CGRYCG 2 cut(s) 558, 2564
BshNI GGYRCC 2 cut(s) 2553, 4546
BshTI ACCGGT 2 cut(s) 3114, 4234
BshVI ATCGAT 1 cut(s) 45
BsiEI CGRYCG 2 cut(s) 558, 2564
BsiHKAI GWGCWC 4 cut(s) 579, 1293, 4279, 4683
BsiHKCI CYCGRG 3 cut(s) 1568, 3433, 4602
BsiWI CGTACG 1 cut(s) 1418
BslFI GGGAC 4 cut(s) 509, 2486, 3788, 4145
BsmAI GTCTC 9 cut(s) 23, 240, 1061, 1637, 2287, 2797, 3446, 4355, 4371
BsmBI CGTCTC 3 cut(s) 240, 4355, 4371
BsmFI GGGAC 4 cut(s) 509, 2486, 3788, 4145
BsmI GAATGC 4 cut(s) 893, 1128, 3163, 3742
Bso31I GGTCTC 3 cut(s) 2287, 2797, 3446
BsoBI CYCGRG 3 cut(s) 1568, 3433, 4602
Bsp119I TTCGAA 1 cut(s) 790
Bsp120I GGGCCC 1 cut(s) 1321
Bsp13I TCCGGA 4 cut(s) 571, 3037, 3560, 4288
Bsp1407I TGTACA 1 cut(s) 2001
Bsp1720I GCTNAGC 2 cut(s) 646, 3741
BspCNI CTCAG 9 cut(s) 250, 889, 1057, 1096, 2056, 2614, 2707, 3166, 3733
BspDI ATCGAT 1 cut(s) 45
BspEI TCCGGA 4 cut(s) 571, 3037, 3560, 4288
BspFNI CGCG 2 cut(s) 984, 3822
BspHI TCATGA 1 cut(s) 1972
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 2 cut(s) 511, 2385
BspQI GCTCTTC 1 cut(s) 1599
BspT104I TTCGAA 1 cut(s) 790
BspT107I GGYRCC 2 cut(s) 2553, 4546
BspTNI GGTCTC 3 cut(s) 2287, 2797, 3446
BsrBI CCGCTC 1 cut(s) 419
BsrDI GCAATG 2 cut(s) 166, 1222
BsrFI RCCGGY 4 cut(s) 963, 2071, 3114, 4234
BsrGI TGTACA 1 cut(s) 2001
BssAI RCCGGY 4 cut(s) 963, 2071, 3114, 4234
BssNI GRCGYC 1 cut(s) 4364
BssSI CACGAG 1 cut(s) 723
BssT1I CCWWGG 3 cut(s) 1345, 1931, 2012
Bst2BI CACGAG 1 cut(s) 723
Bst2UI CCWGG 9 cut(s) 529, 814, 906, 1208, 1235, 1552, 2883, 2900, 4244
Bst4CI ACNGT 7 cut(s) 269, 1180, 1418, 1585, 2191, 3993, 4614
Bst6I CTCTTC 6 cut(s) 1599, 2019, 2286, 2620, 3587, 4645
BstACI GRCGYC 1 cut(s) 4364
BstAUI TGTACA 1 cut(s) 2001
BstBAI YACGTR 1 cut(s) 2082
BstBI TTCGAA 1 cut(s) 790
BstDSI CCRYGG 3 cut(s) 1561, 1920, 4219
BstENI CCTNNNNNAGG 1 cut(s) 909
BstFNI CGCG 2 cut(s) 984, 3822
BstH2I RGCGCY 1 cut(s) 2816
BstHHI GCGC 4 cut(s) 984, 1603, 2815, 3824
BstMAI GTCTC 9 cut(s) 23, 240, 1061, 1637, 2287, 2797, 3446, 4355, 4371
BstMCI CGRYCG 2 cut(s) 558, 2564
BstNI CCWGG 9 cut(s) 529, 814, 906, 1208, 1235, 1552, 2883, 2900, 4244
BstPAI GACNNNNGTC 2 cut(s) 2478, 4624
BstSFI CTRYAG 2 cut(s) 114, 181
BstSLI GKGCMC 3 cut(s) 1325, 4279, 4551
BstUI CGCG 2 cut(s) 984, 3822
BstV1I GCAGC 9 cut(s) 100, 128, 2164, 2352, 2965, 4125, 4440, 4643, 4646
BstV2I GAAGAC 4 cut(s) 1140, 1468, 2028, 4586
BstX2I RGATCY 6 cut(s) 709, 2363, 2433, 3454, 3557, 4161
BstYI RGATCY 6 cut(s) 709, 2363, 2433, 3454, 3557, 4161
Bsu15I ATCGAT 1 cut(s) 45
BsuI GTATCC 2 cut(s) 170, 4399
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 3 cut(s) 1561, 1920, 4219
BtgZI GCGATG 1 cut(s) 1215
BtsI GCAGTG 3 cut(s) 18, 540, 2206
BveI ACCTGC 2 cut(s) 511, 2385
CciI TCATGA 1 cut(s) 1972
CfoI GCGC 4 cut(s) 984, 1603, 2815, 3824
Cfr10I RCCGGY 4 cut(s) 963, 2071, 3114, 4234
ClaI ATCGAT 1 cut(s) 45
CpoI CGGWCCG 1 cut(s) 986
CseI GACGC 2 cut(s) 2690, 4475
Csp6I GTAC 5 cut(s) 137, 734, 1419, 2002, 3085
CspAI ACCGGT 2 cut(s) 3114, 4234
CspCI CAANNNNNGTGG 4 cut(s) 80, 115, 3535, 3570
CspI CGGWCCG 1 cut(s) 986
CviQI GTAC 5 cut(s) 137, 734, 1419, 2002, 3085
DraI TTTAAA 1 cut(s) 2370
DriI GACNNNNNGTC 1 cut(s) 1225
EaeI YGGCCR 2 cut(s) 2162, 4240
Eam1104I CTCTTC 6 cut(s) 1599, 2019, 2286, 2620, 3587, 4645
Eam1105I GACNNNNNGTC 1 cut(s) 1225
EarI CTCTTC 6 cut(s) 1599, 2019, 2286, 2620, 3587, 4645
EciI GGCGGA 5 cut(s) 1219, 1439, 2530, 2647, 4108
Ecl136II GAGCTC 1 cut(s) 577
Eco130I CCWWGG 3 cut(s) 1345, 1931, 2012
Eco147I AGGCCT 2 cut(s) 904, 2011
Eco24I GRGCYC 6 cut(s) 579, 1325, 1569, 1594, 3886, 4151
Eco31I GGTCTC 3 cut(s) 2287, 2797, 3446
Eco32I GATATC 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 577
Eco57I CTGAAG 5 cut(s) 2609, 2712, 2894, 3245, 3934
Eco88I CYCGRG 3 cut(s) 1568, 3433, 4602
EcoICRI GAGCTC 1 cut(s) 577
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoO109I RGGNCCY 6 cut(s) 523, 1243, 1321, 3802, 4132, 4626
EcoRI GAATTC 2 cut(s) 1665, 1958
EcoRII CCWGG 9 cut(s) 527, 812, 904, 1206, 1233, 1550, 2881, 2898, 4242
EcoRV GATATC 1 cut(s) 330
EcoT14I CCWWGG 3 cut(s) 1345, 1931, 2012
EcoT22I ATGCAT 1 cut(s) 2184
EcoT38I GRGCYC 6 cut(s) 579, 1325, 1569, 1594, 3886, 4151
ErhI CCWWGG 3 cut(s) 1345, 1931, 2012
Esp3I CGTCTC 3 cut(s) 240, 4355, 4371
FalI AAGNNNNNCTT 2 cut(s) 4380, 4412
FaqI GGGAC 4 cut(s) 509, 2486, 3788, 4145
FauI CCCGC 9 cut(s) 645, 1119, 1516, 2463, 2928, 2974, 3606, 3626, 4176
FauNDI CATATG 1 cut(s) 3812
FblI GTMKAC 1 cut(s) 3175
FriOI GRGCYC 6 cut(s) 579, 1325, 1569, 1594, 3886, 4151
FseI GGCCGGCC 1 cut(s) 2075
FspBI CTAG 4 cut(s) 282, 1670, 2013, 2771
GlaI GCGC 4 cut(s) 983, 1602, 2814, 3823
GsaI CCCAGC 8 cut(s) 246, 644, 690, 975, 1948, 2323, 2859, 3858
GsuI CTGGAG 6 cut(s) 344, 927, 1752, 1784, 2450, 4562
HaeII RGCGCY 1 cut(s) 2816
HgaI GACGC 2 cut(s) 2690, 4475
HhaI GCGC 4 cut(s) 984, 1603, 2815, 3824
Hin1I GRCGYC 1 cut(s) 4364
Hin6I GCGC 4 cut(s) 982, 1601, 2813, 3822
HinP1I GCGC 4 cut(s) 982, 1601, 2813, 3822
HincII GTYRAC 2 cut(s) 1906, 3523
HindII GTYRAC 2 cut(s) 1906, 3523
HindIII AAGCTT 1 cut(s) 2654
HpaI GTTAAC 1 cut(s) 1906
Hpy166II GTNNAC 9 cut(s) 137, 388, 445, 863, 1906, 3176, 3523, 4223, 4277
Hpy8I GTNNAC 9 cut(s) 137, 388, 445, 863, 1906, 3176, 3523, 4223, 4277
Hpy99I CGWCG 2 cut(s) 4491, 4623
HpyCH4III ACNGT 7 cut(s) 269, 1180, 1418, 1585, 2191, 3993, 4614
HpyCH4IV ACGT 4 cut(s) 233, 2081, 3723, 4364
HpySE526I ACGT 4 cut(s) 233, 2081, 3723, 4364
Hsp92I GRCGYC 1 cut(s) 4364
HspAI GCGC 4 cut(s) 982, 1601, 2813, 3822
KflI GGGWCCC 1 cut(s) 3802
Kpn2I TCCGGA 4 cut(s) 571, 3037, 3560, 4288
KroI GCCGGC 2 cut(s) 963, 2071
KroNI GCCGGC 2 cut(s) 965, 2073
KspAI GTTAAC 1 cut(s) 1906
LguI GCTCTTC 1 cut(s) 1599
Lsp1109I GCAGC 9 cut(s) 100, 128, 2164, 2352, 2965, 4125, 4440, 4643, 4646
MaeI CTAG 4 cut(s) 282, 1670, 2013, 2771
MaeII ACGT 4 cut(s) 233, 2081, 3723, 4364
MaeIII GTNAC 8 cut(s) 263, 1327, 1510, 2753, 2827, 3166, 4252, 4557
MbiI CCGCTC 1 cut(s) 419
MfeI CAATTG 2 cut(s) 2705, 4353
MflI RGATCY 6 cut(s) 709, 2363, 2433, 3454, 3557, 4161
MlsI TGGCCA 1 cut(s) 4242
MluNI TGGCCA 1 cut(s) 4242
MlyI GAGTC 9 cut(s) 408, 613, 806, 1096, 1846, 2526, 2695, 2998, 4301
MmeI TCCRAC 9 cut(s) 573, 764, 1467, 1599, 1702, 1820, 3516, 4642, 4752
Mox20I TGGCCA 1 cut(s) 4242
Mph1103I ATGCAT 1 cut(s) 2184
MroI TCCGGA 4 cut(s) 571, 3037, 3560, 4288
MroNI GCCGGC 2 cut(s) 963, 2071
MroXI GAANNNNTTC 4 cut(s) 548, 837, 2028, 2258
MscI TGGCCA 1 cut(s) 4242
MslI CAYNNNNRTG 2 cut(s) 171, 723
Msp20I TGGCCA 1 cut(s) 4242
MspA1I CMGCKG 3 cut(s) 640, 896, 2470
MunI CAATTG 2 cut(s) 2705, 4353
Mva1269I GAATGC 4 cut(s) 893, 1128, 3163, 3742
MvaI CCWGG 9 cut(s) 529, 814, 906, 1208, 1235, 1552, 2883, 2900, 4244
MvnI CGCG 2 cut(s) 984, 3822
NaeI GCCGGC 2 cut(s) 965, 2073
NciI CCSGG 5 cut(s) 714, 990, 1325, 3786, 4229
NdeI CATATG 1 cut(s) 3812
NgoMIV GCCGGC 2 cut(s) 963, 2071
NmeAIII GCCGAG 2 cut(s) 2491, 2720
NmuCI GTSAC 3 cut(s) 1510, 2827, 3166
NsiI ATGCAT 1 cut(s) 2184
NspV TTCGAA 1 cut(s) 790
OliI CACNNNNGTG 1 cut(s) 723
PaeR7I CTCGAG 1 cut(s) 3433
PagI TCATGA 1 cut(s) 1972
PaqCI CACCTGC 1 cut(s) 2385
PasI CCCWGGG 2 cut(s) 528, 1234
PceI AGGCCT 2 cut(s) 904, 2011
PciSI GCTCTTC 1 cut(s) 1599
PctI GAATGC 4 cut(s) 893, 1128, 3163, 3742
PdiI GCCGGC 2 cut(s) 965, 2073
PdmI GAANNNNTTC 4 cut(s) 548, 837, 2028, 2258
Pfl23II CGTACG 1 cut(s) 1418
PflFI GACNNNGTC 1 cut(s) 2129
PflMI CCANNNNNTGG 1 cut(s) 322
PfoI TCCNGGA 3 cut(s) 712, 1550, 3784
PinAI ACCGGT 2 cut(s) 3114, 4234
Ple19I CGATCG 1 cut(s) 2564
PleI GAGTC 9 cut(s) 407, 613, 805, 1095, 1845, 2526, 2694, 2998, 4300
PpsI GAGTC 9 cut(s) 407, 613, 805, 1095, 1845, 2526, 2694, 2998, 4300
Ppu21I YACGTR 1 cut(s) 2082
PpuMI RGGWCCY 5 cut(s) 523, 1243, 3802, 4132, 4626
PshAI GACNNNNGTC 2 cut(s) 2478, 4624
PshBI ATTAAT 1 cut(s) 2781
PsiI TTATAA 1 cut(s) 4740
Psp124BI GAGCTC 1 cut(s) 579
Psp1406I AACGTT 1 cut(s) 3723
Psp5II RGGWCCY 5 cut(s) 523, 1243, 3802, 4132, 4626
Psp6I CCWGG 9 cut(s) 527, 812, 904, 1206, 1233, 1550, 2881, 2898, 4242
PspFI CCCAGC 8 cut(s) 242, 640, 686, 971, 1944, 2319, 2855, 3854
PspGI CCWGG 9 cut(s) 527, 812, 904, 1206, 1233, 1550, 2881, 2898, 4242
PspLI CGTACG 1 cut(s) 1418
PspOMI GGGCCC 1 cut(s) 1321
PspPPI RGGWCCY 5 cut(s) 523, 1243, 3802, 4132, 4626
PspXI VCTCGAGB 1 cut(s) 3433
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 6 cut(s) 709, 2363, 2433, 3454, 3557, 4161
PsyI GACNNNGTC 1 cut(s) 2129
PvuI CGATCG 1 cut(s) 2564
RigI GGCCGGCC 1 cut(s) 2075
RsaI GTAC 5 cut(s) 138, 735, 1420, 2003, 3086
RsaNI GTAC 5 cut(s) 137, 734, 1419, 2002, 3085
RseI CAYNNNNRTG 2 cut(s) 171, 723
Rsr2I CGGWCCG 1 cut(s) 986
RsrII CGGWCCG 1 cut(s) 986
SacI GAGCTC 1 cut(s) 579
SapI GCTCTTC 1 cut(s) 1599
SchI GAGTC 9 cut(s) 408, 613, 806, 1096, 1846, 2526, 2695, 2998, 4301
SfcI CTRYAG 2 cut(s) 114, 181
Sfr274I CTCGAG 1 cut(s) 3433
SfuI TTCGAA 1 cut(s) 790
SlaI CTCGAG 1 cut(s) 3433
SmiMI CAYNNNNRTG 2 cut(s) 171, 723
SmlI CTYRAG 4 cut(s) 1296, 1316, 3433, 3887
SmoI CTYRAG 4 cut(s) 1296, 1316, 3433, 3887
SpeI ACTAGT 1 cut(s) 281
SseBI AGGCCT 2 cut(s) 904, 2011
SspI AATATT 4 cut(s) 409, 1774, 2233, 4309
SspMI CTAG 4 cut(s) 282, 1670, 2013, 2771
SstI GAGCTC 1 cut(s) 579
StuI AGGCCT 2 cut(s) 904, 2011
StyI CCWWGG 3 cut(s) 1345, 1931, 2012
TaaI ACNGT 7 cut(s) 269, 1180, 1418, 1585, 2191, 3993, 4614
TaiI ACGT 4 cut(s) 236, 2084, 3726, 4367
TaqI TCGA 7 cut(s) 45, 156, 790, 2564, 2987, 3434, 4067
TaqII GACCGA 4 cut(s) 544, 2779, 3076, 4420
TatI WGTACW 1 cut(s) 2001
TauI GCSGC 5 cut(s) 422, 2332, 2382, 2852, 2855
TseFI GTSAC 3 cut(s) 1510, 2827, 3166
TseI GCWGC 9 cut(s) 113, 116, 2152, 2340, 2978, 4113, 4453, 4656, 4659
Tsp45I GTSAC 3 cut(s) 1510, 2827, 3166
TspGWI ACGGA 9 cut(s) 773, 880, 1039, 1346, 1531, 1937, 2846, 3434, 4025
Tth111I GACNNNGTC 1 cut(s) 2129
Van91I CCANNNNNTGG 1 cut(s) 322
VneI GTGCAC 1 cut(s) 4275
VspI ATTAAT 1 cut(s) 2781
XagI CCTNNNNNAGG 1 cut(s) 909
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XhoI CTCGAG 1 cut(s) 3433
XmaJI CCTAGG 1 cut(s) 2012
XmiI GTMKAC 1 cut(s) 3175
XmnI GAANNNNTTC 4 cut(s) 548, 837, 2028, 2258
XspI CTAG 4 cut(s) 282, 1670, 2013, 2771
ZraI GACGTC 1 cut(s) 4365
Zsp2I ATGCAT 1 cut(s) 2184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.