RLG00000034326

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000194
Physical Location & Seq
Reverse (-)
40725078 .. 40725758
681 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034326

Sequence Viewer

Length: 579 bp
ATGACCGGGAACCTGGCCTGCATTAACCCTCCCTTCCAATTGGATGAACAGGTGGCCATTCAATCAATTCCATTAATTAATCTAGCTCCTCCAGATCAATTGGTGTGGCCTGCTAAAAATCATGGTGCTTATACTATTCGTTCAAGTTACCACTTTTGCCATTTGGGTACGTTTCTGATTACCCGCTCTCATCCTCATACTTCACATATTGTTGATTCTAAGGTTTGGAAATTTGTGTGGTCTGTGGGTTATTTTCCCAAAATTAAGCATTTTCGATGGAGAGCTTTATCAGATTCTTTGGATACCAATGACGCTTTGTTTTGCAGGCATATTAGTCGTTCATCTCTCTGCCCTATTTGTAATATTGAGAGTGAATCCATTGAGCATTTACTGTTCACATGTCCTTTGATTCGTGCAGCTTGGTTTGCACATCCAATTGGTCTTCACTTTTCTCTGGATTCTATCACTACTCTAGATAGTATACTTGTGTCTTTGATTAATCCTAAACCAATCTTGGTTGCTCGGAAAGCCTATGATGCTGCATTAGAATTTGTACCGAGGCCTACTCGTGTTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

193

Amino Acids

21.75

Weight (kDa)

8.58

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 72 - 141 2.3e-17 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 481
AciI CCGC 1 cut(s) 184
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 230, 548
AfaI GTAC 2 cut(s) 169, 555
AflIII ACRYGT 1 cut(s) 398
AgsI TTSAA 2 cut(s) 62, 144
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 3 cut(s) 86, 284, 419
AluI AGCT 3 cut(s) 86, 284, 419
AoxI GGCC 4 cut(s) 15, 54, 107, 560
ApeKI GCWGC 2 cut(s) 416, 539
ApoI RAATTY 2 cut(s) 230, 548
AseI ATTAAT 3 cut(s) 74, 78, 498
AsuC2I CCSGG 1 cut(s) 7
BalI TGGCCA 1 cut(s) 56
BauI CACGAG 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 428, 526
BccI CCATC 1 cut(s) 270
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 14
BciVI GTATCC 1 cut(s) 295
BcnI CCSGG 1 cut(s) 7
BfaI CTAG 2 cut(s) 83, 473
BfuI GTATCC 1 cut(s) 295
BisI GCNGC 2 cut(s) 417, 540
BlsI GCNGC 2 cut(s) 418, 541
Bme1390I CCNGG 2 cut(s) 7, 14
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 2 cut(s) 7, 14
BmsI GCATC 1 cut(s) 526
BpiI GAAGAC 1 cut(s) 434
BplI GAGNNNNNCTC 1 cut(s) 550
BpmI CTGGAG 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 557
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 557
BseGI GGATG 3 cut(s) 49, 190, 430
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 428, 526
BsgI GTGCAG 1 cut(s) 435
BshFI GGCC 4 cut(s) 17, 56, 109, 562
BsiSI CCGG 1 cut(s) 6
BsnI GGCC 4 cut(s) 17, 56, 109, 562
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 1 cut(s) 184
BspANI GGCC 4 cut(s) 17, 56, 109, 562
BspLI GGNNCC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 557
BssMI GATC 1 cut(s) 94
BssNAI GTATAC 1 cut(s) 482
BssSI CACGAG 1 cut(s) 567
Bst1107I GTATAC 1 cut(s) 482
Bst2BI CACGAG 1 cut(s) 567
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 393
BstC8I GCNNGC 3 cut(s) 19, 111, 326
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 49, 190, 430
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 3 cut(s) 425, 527, 536
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 402
BstSCI CCNGG 2 cut(s) 5, 12
BstV1I GCAGC 2 cut(s) 428, 526
BstV2I GAAGAC 1 cut(s) 434
BstZ17I GTATAC 1 cut(s) 482
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 4 cut(s) 17, 56, 109, 562
BtsCI GGATG 3 cut(s) 49, 190, 430
Cac8I GCNNGC 3 cut(s) 19, 111, 326
CseI GACGC 1 cut(s) 320
Csp6I GTAC 2 cut(s) 168, 554
CspCI CAANNNNNGTGG 2 cut(s) 86, 121
CviAII CATG 2 cut(s) 122, 399
CviJI RGCY 8 cut(s) 17, 56, 86, 109, 284, 419, 530, 562
CviKI_1 RGCY 8 cut(s) 17, 56, 86, 109, 284, 419, 530, 562
CviQI GTAC 2 cut(s) 168, 554
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 12
FaeI CATG 2 cut(s) 125, 402
FaiI YATR 9 cut(s) 123, 132, 198, 207, 330, 400, 482, 534, 577
FatI CATG 2 cut(s) 121, 398
FauI CCCGC 1 cut(s) 191
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 417, 540
FokI GGATG 3 cut(s) 56, 177, 417
Fsp4HI GCNGC 2 cut(s) 417, 540
FspBI CTAG 2 cut(s) 83, 473
GluI GCNGC 2 cut(s) 417, 540
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 4 cut(s) 17, 56, 109, 562
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 320
Hin1II CATG 2 cut(s) 125, 402
HinfI GANTC 5 cut(s) 215, 293, 374, 409, 458
HpaII CCGG 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 396, 482
Hpy188I TCNGA 3 cut(s) 177, 292, 525
Hpy188III TCNNGA 3 cut(s) 92, 455, 473
Hpy8I GTNNAC 2 cut(s) 396, 482
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 393
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 5 cut(s) 21, 324, 416, 428, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 527, 536
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 2 cut(s) 125, 402
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 8 cut(s) 19, 26, 31, 35, 105, 123, 310, 440
Lsp1109I GCAGC 2 cut(s) 428, 526
LweI GCATC 1 cut(s) 526
MaeI CTAG 2 cut(s) 83, 473
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 146
MalI GATC 1 cut(s) 96
MbiI CCGCTC 1 cut(s) 186
MboI GATC 1 cut(s) 94
MboII GAAGA 1 cut(s) 434
MfeI CAATTG 3 cut(s) 38, 98, 435
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 8 cut(s) 38, 66, 75, 98, 230, 261, 435, 548
MluNI TGGCCA 1 cut(s) 56
MnlI CCTC 4 cut(s) 39, 99, 204, 552
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 5 cut(s) 24, 74, 78, 264, 498
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 7, 14
MunI CAATTG 3 cut(s) 38, 98, 435
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 425, 527, 536
NciI CCSGG 1 cut(s) 7
NdeII GATC 1 cut(s) 94
NlaIII CATG 2 cut(s) 125, 402
NlaIV GGNNCC 1 cut(s) 11
NspI RCATGY 1 cut(s) 402
PacI TTAATTAA 1 cut(s) 78
PceI AGGCCT 1 cut(s) 562
PciI ACATGT 1 cut(s) 398
PfeI GAWTC 5 cut(s) 215, 293, 374, 409, 458
PkrI GCNGC 2 cut(s) 418, 541
PscI ACATGT 1 cut(s) 398
PshBI ATTAAT 3 cut(s) 74, 78, 498
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 11
RsaI GTAC 2 cut(s) 169, 555
RsaNI GTAC 2 cut(s) 168, 554
SaqAI TTAA 5 cut(s) 24, 74, 78, 264, 498
SatI GCNGC 2 cut(s) 417, 540
Sau3AI GATC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 7, 14
SetI ASST 7 cut(s) 15, 54, 88, 173, 225, 286, 421
SfaNI GCATC 1 cut(s) 526
Sse9I AATT 8 cut(s) 38, 66, 75, 98, 230, 261, 435, 548
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 1 cut(s) 184
SspI AATATT 1 cut(s) 364
SspMI CTAG 2 cut(s) 83, 473
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 2 cut(s) 5, 12
TaaI ACNGT 1 cut(s) 393
TaiI ACGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 274
TasI AATT 8 cut(s) 38, 66, 75, 98, 230, 261, 435, 548
TfiI GAWTC 5 cut(s) 215, 293, 374, 409, 458
Tru1I TTAA 5 cut(s) 24, 74, 78, 264, 498
Tru9I TTAA 5 cut(s) 24, 74, 78, 264, 498
TseI GCWGC 2 cut(s) 416, 539
TspDTI ATGAA 2 cut(s) 60, 330
VspI ATTAAT 3 cut(s) 74, 78, 498
XapI RAATTY 2 cut(s) 230, 548
XbaI TCTAGA 1 cut(s) 472
XceI RCATGY 1 cut(s) 402
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 2 cut(s) 83, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.