Rmu_sc0004988.1_g000017

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004988.1
OG0000194
Physical Location & Seq
Reverse (-)
52384 .. 52815
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004988.1_g000017.1.cds

Sequence Viewer

Length: 432 bp
atgagcacaagtcgatctccttgtccttcaccatctgatggggagggccatgatcgtctgatctggccctggaataaggatgggcagtttactgtgcgctcagggtaccactggattcattccaaactcaccatctctcaaccaccttattgtggatcctctcacgtggtgaatactaaagtatggaaattgctttggaaaattgagactctgcctaagattaagaacttcctctggaaggtcctcaatggagcagcccctacaatggctaacctatataggagaaagttggccccttctcctctttgtccaagttgtggtgcagaggaagaaacttttgaacacttattattgctatgtccctgggtggatttagtttggtttggctttcctcttgggatcagaattgataagcaaaatcacaacttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.41

Weight (kDa)

9.06

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 105
AccB7I CCANNNNNTGG 2 cut(s) 38, 317
AclWI GGATC 3 cut(s) 150, 163, 407
AcvI CACGTG 1 cut(s) 166
AdeI CACNNNGTG 1 cut(s) 169
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 5 cut(s) 38, 152, 238, 265, 317
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 2 cut(s) 68, 362
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 3 cut(s) 150, 163, 407
AoxI GGCC 3 cut(s) 46, 65, 291
ApeKI GCWGC 1 cut(s) 254
Asp718I GGTACC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 4 cut(s) 46, 66, 241, 292
AsuHPI GGTGA 3 cut(s) 21, 121, 181
AvaII GGWCC 1 cut(s) 241
BamHI GGATCC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 105
BbrPI CACGTG 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 266
BccI CCATC 4 cut(s) 32, 40, 74, 140
BciT130I CCWGG 2 cut(s) 70, 364
BcoDI GTCTC 1 cut(s) 200
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 70, 364
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 4 cut(s) 46, 66, 241, 292
BmiI GGNNCC 3 cut(s) 107, 157, 294
BmrFI CCNGG 2 cut(s) 70, 364
Bpu10I CCTNAGC 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 166
BsaJI CCNNGG 3 cut(s) 68, 362, 363
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 152, 238, 265, 317
Bse1I ACTGG 1 cut(s) 116
BseBI CCWGG 2 cut(s) 70, 364
BseDI CCNNGG 3 cut(s) 68, 362, 363
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 5 cut(s) 38, 152, 238, 265, 317
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 266
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 3 cut(s) 48, 67, 293
BshNI GGYRCC 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 5 cut(s) 38, 152, 238, 265, 317
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 3 cut(s) 48, 67, 293
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 14, 52, 60, 155, 399
BspANI GGCC 3 cut(s) 48, 67, 293
BspCNI CTCAG 1 cut(s) 113
BspLI GGNNCC 3 cut(s) 107, 157, 294
BspPI GGATC 3 cut(s) 150, 163, 407
BspT107I GGYRCC 1 cut(s) 105
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 3 cut(s) 68, 362, 363
BssMI GATC 5 cut(s) 14, 52, 60, 155, 399
Bst2UI CCWGG 2 cut(s) 70, 364
Bst4CI ACNGT 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 100, 216
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 5 cut(s) 17, 55, 63, 158, 402
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 5 cut(s) 14, 52, 60, 155, 399
BstNI CCWGG 2 cut(s) 70, 364
BstSCI CCNGG 2 cut(s) 68, 362
BstV1I GCAGC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 3 cut(s) 48, 67, 293
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 109
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 4 cut(s) 46, 66, 241, 292
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 50
CviJI RGCY 6 cut(s) 48, 67, 257, 269, 293, 387
CviKI_1 RGCY 6 cut(s) 48, 67, 257, 269, 293, 387
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 2 cut(s) 100, 216
DpnI GATC 5 cut(s) 16, 54, 62, 157, 401
DpnII GATC 5 cut(s) 14, 52, 60, 155, 399
DraIII CACNNNGTG 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 241
Eco72I CACGTG 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 68, 362
FaeI CATG 1 cut(s) 53
FaiI YATR 5 cut(s) 51, 184, 277, 279, 358
FaqI GGGAC 1 cut(s) 345
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 255
GlaI GCGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 3 cut(s) 48, 67, 293
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 53
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 2 cut(s) 115, 208
HphI GGTGA 3 cut(s) 21, 121, 181
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 3 cut(s) 37, 60, 404
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 3 cut(s) 36, 232, 306
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 100, 216
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 1 cut(s) 53
HspAI GCGC 1 cut(s) 97
KpnI GGTACC 1 cut(s) 109
Kzo9I GATC 5 cut(s) 14, 52, 60, 155, 399
LmnI GCTCC 1 cut(s) 251
LpnPI CCDG 8 cut(s) 49, 55, 82, 87, 97, 220, 349, 376
Lsp1109I GCAGC 1 cut(s) 266
MaeII ACGT 1 cut(s) 165
MalI GATC 5 cut(s) 16, 54, 62, 157, 401
MboI GATC 5 cut(s) 14, 52, 60, 155, 399
MboII GAAGA 1 cut(s) 341
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 188, 201, 405
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 7 cut(s) 37, 169, 242, 254, 312, 319, 402
MseI TTAA 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 70, 364
MvaI CCWGG 2 cut(s) 70, 364
NdeII GATC 5 cut(s) 14, 52, 60, 155, 399
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 3 cut(s) 107, 157, 294
PasI CCCWGGG 1 cut(s) 363
PfeI GAWTC 1 cut(s) 115
PflMI CCANNNNNTGG 2 cut(s) 38, 317
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 202
PmaCI CACGTG 1 cut(s) 166
PmlI CACGTG 1 cut(s) 166
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 68, 362
PspCI CACGTG 1 cut(s) 166
PspGI CCWGG 2 cut(s) 68, 362
PspN4I GGNNCC 3 cut(s) 107, 157, 294
PspPI GGNCC 4 cut(s) 46, 66, 241, 292
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 5 cut(s) 14, 52, 60, 155, 399
Sau96I GGNCC 4 cut(s) 46, 66, 241, 292
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 2 cut(s) 70, 364
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 148, 168, 243, 276
SinI GGWCC 1 cut(s) 241
Sse9I AATT 3 cut(s) 188, 201, 405
StyD4I CCNGG 2 cut(s) 68, 362
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 13
TasI AATT 3 cut(s) 188, 201, 405
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 116
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 1 cut(s) 116
Van91I CCANNNNNTGG 2 cut(s) 38, 317
VpaK11BI GGWCC 1 cut(s) 241
XagI CCTNNNNNAGG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.