Rmu_sc0009139.1_g000004

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009139.1
OG0000194
Physical Location & Seq
Reverse (-)
20791 .. 22966
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009139.1_g000004.1.cds

Sequence Viewer

Length: 1368 bp
atgatcaaaaagatatgtcacgctggtcttttagatgccatcaagctaaacactgatggacctttggttaaccacctcttctttgctgatgaatcaatcttctttctcaaggccactttgtcaatttgcgaggtgttgtctgacacaattcatcactactgctgtgcttcggtttggggtagatcaaagacctcagctttggcttatgttaaagaaaacatacttcagaagatttcgggttggtctaagtcaactctatctcaagcaggcaaggagatattgatcaaatcagttgcaatggcagtcctgatgtacccaatgactgttttcaaattcccagctgggctctcaaatcaaataaactcggtgttggctaatttctggtgggggaatgcttcatcaccgggtatgcattggaaaaaatgggcttctcttggtattccaaaatcaaatggaggtttggggttccggaatttggcggacttcaacattgctttgcttgcaaagaagggctggcgcatcctttccagtccaaatgcattgtgggtaagagtcctaaaaagcagatatttccctcgctccactttcctagaggctacccgtggttcttcctcttcatgggcttggtctagtctccttgaaggtaggcatctcatctcgggtggaggaatgtggcaggttgattctggctcccaaattgacttctggaaggacaactggattcctagatacccctctggtaacctcctccaatacaggccccaaaatgtcccttttctgtccttgatgaatgtctctcatgtcattgatagatcatccaactcttggaatctggatcgggtctcaactatcattcctttggagatcttcaatgccatccaagcaaccacttttggcacccagaacgaccaggacaagctaatttgggctcccactacatctggagtttatttggttaagtcaggatatgcacttcaagtctctgtgaaaggcttgtcccagtcaaatgttgcttcctcctccttggctgctgaagcaatggcaatcgatcttgggctcagccttgcctcctctataccactttcttcctttcagttggaatcagactctttggtattgatatcagcttttataaaccctttgtctgcggttgactggtcggcttctcagattgtttcgactatccgaacgaaagcctctcgtttcaactgtgtaaactggcgttggaccagtaggaggacaaatgttgtagctgatcttgtggcagggtggtcctcgcgcagggtgtgccccgtggattgggactctaatccccttccctccctaatgtgcattttactttatgatgcagctgatccccctccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

455

Amino Acids

50.19

Weight (kDa)

9.38

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1133
Acc36I ACCTGC 1 cut(s) 667
AccB1I GGYRCC 1 cut(s) 896
AccB7I CCANNNNNTGG 1 cut(s) 825
AccII CGCG 1 cut(s) 1279
AccIII TCCGGA 1 cut(s) 468
AciI CCGC 2 cut(s) 479, 1148
AclWI GGATC 2 cut(s) 843, 1349
AcsI RAATTY 2 cut(s) 332, 472
AcuI CTGAAG 2 cut(s) 209, 1053
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 6 cut(s) 475, 618, 825, 1236, 1281, 1299
AgsI TTSAA 6 cut(s) 331, 487, 641, 871, 977, 1207
AjnI CCWGG 1 cut(s) 909
AluBI AGCT 7 cut(s) 46, 197, 341, 919, 1127, 1253, 1352
AluI AGCT 7 cut(s) 46, 197, 341, 919, 1127, 1253, 1352
Alw26I GTCTC 4 cut(s) 638, 799, 847, 985
AlwI GGATC 2 cut(s) 843, 1349
Ama87I CYCGRG 1 cut(s) 658
Aor13HI TCCGGA 1 cut(s) 468
AoxI GGCC 2 cut(s) 111, 758
ApeKI GCWGC 2 cut(s) 1028, 1349
ApoI RAATTY 2 cut(s) 332, 472
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AspLEI GCGC 2 cut(s) 519, 1281
AspS9I GGNCC 4 cut(s) 59, 759, 1227, 1272
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 393
AvaI CYCGRG 1 cut(s) 658
AvaII GGWCC 3 cut(s) 59, 1227, 1272
BaeGI GKGCMC 1 cut(s) 1292
BanI GGYRCC 1 cut(s) 896
BanII GRGCYC 3 cut(s) 348, 931, 1059
BbvCI CCTCAGC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 1015, 1361
BccI CCATC 3 cut(s) 47, 50, 884
BciT130I CCWGG 1 cut(s) 911
BclI TGATCA 2 cut(s) 3, 282
BcnI CCSGG 1 cut(s) 405
BcoDI GTCTC 4 cut(s) 638, 799, 847, 985
BfaI CTAG 3 cut(s) 590, 630, 726
BfuAI ACCTGC 1 cut(s) 667
BglII AGATCT 1 cut(s) 864
BisI GCNGC 2 cut(s) 1029, 1350
BlpI GCTNAGC 1 cut(s) 1058
BlsI GCNGC 2 cut(s) 1030, 1351
Bme1390I CCNGG 2 cut(s) 405, 911
Bme18I GGWCC 3 cut(s) 59, 1227, 1272
BmeT110I CYCGRG 1 cut(s) 658
BmgT120I GGNCC 4 cut(s) 59, 759, 1227, 1272
BmiI GGNNCC 5 cut(s) 467, 691, 761, 898, 930
BmrFI CCNGG 2 cut(s) 405, 911
BmrI ACTGGG 1 cut(s) 994
BmsI GCATC 4 cut(s) 25, 528, 658, 1336
BmuI ACTGGG 1 cut(s) 994
BpmI CTGGAG 1 cut(s) 963
Bpu10I CCTNAGC 1 cut(s) 193
Bpu1102I GCTNAGC 1 cut(s) 1058
BpuEI CTTGAG 2 cut(s) 92, 246
BpuMI CCSGG 1 cut(s) 405
Bsa29I ATCGAT 1 cut(s) 1047
BsaBI GATNNNNATC 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 847
BsaJI CCNNGG 3 cut(s) 601, 1023, 1293
BsaWI WCCGGW 1 cut(s) 468
Bsc4I CCNNNNNNNGG 6 cut(s) 475, 618, 825, 1236, 1281, 1299
Bse1I ACTGG 6 cut(s) 528, 722, 1000, 1160, 1223, 1230
Bse3DI GCAATG 3 cut(s) 303, 489, 1044
Bse8I GATNNNNATC 1 cut(s) 281
BseAI TCCGGA 1 cut(s) 468
BseBI CCWGG 1 cut(s) 911
BseCI ATCGAT 1 cut(s) 1047
BseDI CCNNGG 3 cut(s) 601, 1023, 1293
BseGI GGATG 3 cut(s) 519, 815, 876
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 6 cut(s) 475, 618, 825, 1236, 1281, 1299
BseMI GCAATG 3 cut(s) 303, 489, 1044
BseMII CTCAG 3 cut(s) 207, 1072, 1181
BseNI ACTGG 6 cut(s) 528, 722, 1000, 1160, 1223, 1230
BseRI GAGGAG 3 cut(s) 737, 1009, 1060
BseSI GKGCMC 1 cut(s) 1292
BseXI GCAGC 2 cut(s) 1015, 1361
BseYI CCCAGC 2 cut(s) 337, 341
Bsh1236I CGCG 1 cut(s) 1279
BshFI GGCC 2 cut(s) 113, 760
BshNI GGYRCC 1 cut(s) 896
BshVI ATCGAT 1 cut(s) 1047
BsiHKCI CYCGRG 1 cut(s) 658
BsiSI CCGG 2 cut(s) 404, 469
BslFI GGGAC 3 cut(s) 755, 982, 1316
BslI CCNNNNNNNGG 6 cut(s) 475, 618, 825, 1236, 1281, 1299
BsmAI GTCTC 4 cut(s) 638, 799, 847, 985
BsmFI GGGAC 3 cut(s) 755, 982, 1316
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 2 cut(s) 113, 760
Bso31I GGTCTC 1 cut(s) 847
BsoBI CYCGRG 1 cut(s) 658
Bsp1286I GDGCHC 4 cut(s) 348, 931, 1059, 1292
Bsp13I TCCGGA 1 cut(s) 468
Bsp143I GATC 9 cut(s) 3, 182, 282, 812, 835, 864, 1048, 1255, 1354
Bsp1720I GCTNAGC 1 cut(s) 1058
BspACI CCGC 2 cut(s) 479, 1148
BspANI GGCC 2 cut(s) 113, 760
BspCNI CTCAG 3 cut(s) 206, 1071, 1180
BspDI ATCGAT 1 cut(s) 1047
BspEI TCCGGA 1 cut(s) 468
BspFNI CGCG 1 cut(s) 1279
BspLI GGNNCC 5 cut(s) 467, 691, 761, 898, 930
BspMI ACCTGC 1 cut(s) 667
BspPI GGATC 2 cut(s) 843, 1349
BspT107I GGYRCC 1 cut(s) 896
BspTNI GGTCTC 1 cut(s) 847
BsrDI GCAATG 3 cut(s) 303, 489, 1044
BsrI ACTGG 6 cut(s) 528, 722, 1000, 1160, 1223, 1230
BssECI CCNNGG 3 cut(s) 601, 1023, 1293
BssMI GATC 9 cut(s) 3, 182, 282, 812, 835, 864, 1048, 1255, 1354
BssT1I CCWWGG 1 cut(s) 1023
Bst2UI CCWGG 1 cut(s) 911
Bst4CI ACNGT 2 cut(s) 325, 1211
Bst6I CTCTTC 2 cut(s) 83, 619
BstAPI GCANNNNNTGC 1 cut(s) 1287
BstC8I GCNNGC 3 cut(s) 268, 501, 515
BstDEI CTNAG 5 cut(s) 193, 246, 1058, 1167, 1365
BstDSI CCRYGG 2 cut(s) 601, 1293
BstEII GGTNACC 1 cut(s) 740
BstENI CCTNNNNNAGG 1 cut(s) 1279
BstF5I GGATG 3 cut(s) 519, 815, 876
BstFNI CGCG 1 cut(s) 1279
BstHHI GCGC 2 cut(s) 519, 1281
BstKTI GATC 9 cut(s) 6, 185, 285, 815, 838, 867, 1051, 1258, 1357
BstMAI GTCTC 4 cut(s) 638, 799, 847, 985
BstMBI GATC 9 cut(s) 3, 182, 282, 812, 835, 864, 1048, 1255, 1354
BstMWI GCNNNNNNNGC 4 cut(s) 500, 881, 1034, 1287
BstNI CCWGG 1 cut(s) 911
BstPI GGTNACC 1 cut(s) 740
BstSCI CCNGG 2 cut(s) 403, 909
BstSLI GKGCMC 1 cut(s) 1292
BstUI CGCG 1 cut(s) 1279
BstV1I GCAGC 2 cut(s) 1015, 1361
BstX2I RGATCY 1 cut(s) 864
BstYI RGATCY 1 cut(s) 864
Bsu15I ATCGAT 1 cut(s) 1047
BsuRI GGCC 2 cut(s) 113, 760
BsuTUI ATCGAT 1 cut(s) 1047
BtgI CCRYGG 2 cut(s) 601, 1293
BtsCI GGATG 3 cut(s) 519, 815, 876
BtsIMutI CAGTG 1 cut(s) 51
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 3 cut(s) 268, 501, 515
CfoI GCGC 2 cut(s) 519, 1281
Cfr13I GGNCC 4 cut(s) 59, 759, 1227, 1272
ClaI ATCGAT 1 cut(s) 1047
Csp6I GTAC 1 cut(s) 313
CviAII CATG 2 cut(s) 618, 800
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 5 cut(s) 193, 246, 1058, 1167, 1365
DpnI GATC 9 cut(s) 5, 184, 284, 814, 837, 866, 1050, 1257, 1356
DpnII GATC 9 cut(s) 3, 182, 282, 812, 835, 864, 1048, 1255, 1354
Eam1104I CTCTTC 2 cut(s) 83, 619
EarI CTCTTC 2 cut(s) 83, 619
EciI GGCGGA 1 cut(s) 494
Eco130I CCWWGG 1 cut(s) 1023
Eco24I GRGCYC 3 cut(s) 348, 931, 1059
Eco31I GGTCTC 1 cut(s) 847
Eco32I GATATC 1 cut(s) 1122
Eco47I GGWCC 3 cut(s) 59, 1227, 1272
Eco57I CTGAAG 2 cut(s) 209, 1053
Eco88I CYCGRG 1 cut(s) 658
Eco91I GGTNACC 1 cut(s) 740
EcoNI CCTNNNNNAGG 1 cut(s) 1279
EcoO109I RGGNCCY 1 cut(s) 759
EcoO65I GGTNACC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 909
EcoRV GATATC 1 cut(s) 1122
EcoT14I CCWWGG 1 cut(s) 1023
EcoT22I ATGCAT 2 cut(s) 414, 541
EcoT38I GRGCYC 3 cut(s) 348, 931, 1059
ErhI CCWWGG 1 cut(s) 1023
FaeI CATG 2 cut(s) 621, 803
FaqI GGGAC 3 cut(s) 755, 982, 1316
FatI CATG 2 cut(s) 617, 799
FbaI TGATCA 2 cut(s) 3, 282
Fnu4HI GCNGC 2 cut(s) 1029, 1350
FokI GGATG 3 cut(s) 506, 802, 863
FriOI GRGCYC 3 cut(s) 348, 931, 1059
Fsp4HI GCNGC 2 cut(s) 1029, 1350
FspBI CTAG 3 cut(s) 590, 630, 726
GlaI GCGC 2 cut(s) 518, 1280
GluI GCNGC 2 cut(s) 1029, 1350
GsaI CCCAGC 2 cut(s) 341, 345
GsuI CTGGAG 1 cut(s) 963
HaeIII GGCC 2 cut(s) 113, 760
HapII CCGG 2 cut(s) 404, 469
HhaI GCGC 2 cut(s) 519, 1281
Hin1II CATG 2 cut(s) 621, 803
Hin6I GCGC 2 cut(s) 517, 1279
HinP1I GCGC 2 cut(s) 517, 1279
HincII GTYRAC 3 cut(s) 70, 252, 1153
HindII GTYRAC 3 cut(s) 70, 252, 1153
HinfI GANTC 8 cut(s) 92, 552, 683, 721, 829, 1100, 1106, 1304
HpaI GTTAAC 1 cut(s) 70
HpaII CCGG 2 cut(s) 404, 469
HphI GGTGA 1 cut(s) 393
Hpy166II GTNNAC 4 cut(s) 70, 252, 1153, 1216
Hpy188I TCNGA 5 cut(s) 142, 228, 1105, 1170, 1187
Hpy188III TCNNGA 6 cut(s) 307, 469, 706, 833, 942, 963
Hpy8I GTNNAC 4 cut(s) 70, 252, 1153, 1216
HpyAV CCTTC 4 cut(s) 502, 635, 703, 1325
HpyCH4III ACNGT 2 cut(s) 325, 1211
HpyCH4V TGCA 7 cut(s) 296, 412, 503, 539, 971, 1332, 1349
HpyF10VI GCNNNNNNNGC 4 cut(s) 500, 881, 1034, 1287
HpyF3I CTNAG 5 cut(s) 193, 246, 1058, 1167, 1365
Hsp92II CATG 2 cut(s) 621, 803
HspAI GCGC 2 cut(s) 517, 1279
Kpn2I TCCGGA 1 cut(s) 468
Ksp22I TGATCA 2 cut(s) 3, 282
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 9 cut(s) 3, 182, 282, 812, 835, 864, 1048, 1255, 1354
LmnI GCTCC 3 cut(s) 584, 695, 934
Lsp1109I GCAGC 2 cut(s) 1015, 1361
LweI GCATC 4 cut(s) 25, 528, 658, 1336
MaeI CTAG 3 cut(s) 590, 630, 726
MaeIII GTNAC 2 cut(s) 17, 740
MalI GATC 9 cut(s) 5, 184, 284, 814, 837, 866, 1050, 1257, 1356
MboI GATC 9 cut(s) 3, 182, 282, 812, 835, 864, 1048, 1255, 1354
MboII GAAGA 7 cut(s) 70, 91, 241, 600, 606, 859, 1077
MflI RGATCY 1 cut(s) 864
MhlI GDGCHC 4 cut(s) 348, 931, 1059, 1292
MluCI AATT 7 cut(s) 123, 147, 332, 376, 472, 696, 921
MlyI GAGTC 3 cut(s) 561, 1100, 1298
MmeI TCCRAC 3 cut(s) 843, 1077, 1205
Mph1103I ATGCAT 2 cut(s) 414, 541
MroI TCCGGA 1 cut(s) 468
MseI TTAA 3 cut(s) 69, 210, 957
MspA1I CMGCKG 2 cut(s) 341, 1352
MspI CCGG 2 cut(s) 404, 469
MspR9I CCNGG 2 cut(s) 405, 911
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 1 cut(s) 911
MvnI CGCG 1 cut(s) 1279
MwoI GCNNNNNNNGC 4 cut(s) 500, 881, 1034, 1287
NciI CCSGG 1 cut(s) 405
NdeII GATC 9 cut(s) 3, 182, 282, 812, 835, 864, 1048, 1255, 1354
NlaIII CATG 2 cut(s) 621, 803
NlaIV GGNNCC 5 cut(s) 467, 691, 761, 898, 930
NmuCI GTSAC 1 cut(s) 17
NsiI ATGCAT 2 cut(s) 414, 541
PctI GAATGC 1 cut(s) 397
PfeI GAWTC 5 cut(s) 92, 683, 721, 829, 1100
PflMI CCANNNNNTGG 1 cut(s) 825
PkrI GCNGC 2 cut(s) 1030, 1351
PleI GAGTC 3 cut(s) 560, 1100, 1298
PpsI GAGTC 3 cut(s) 560, 1100, 1298
PsiI TTATAA 1 cut(s) 1133
Psp6I CCWGG 1 cut(s) 909
PspEI GGTNACC 1 cut(s) 740
PspFI CCCAGC 2 cut(s) 337, 341
PspGI CCWGG 1 cut(s) 909
PspN4I GGNNCC 5 cut(s) 467, 691, 761, 898, 930
PspPI GGNCC 4 cut(s) 59, 759, 1227, 1272
PsuI RGATCY 1 cut(s) 864
PvuII CAGCTG 2 cut(s) 341, 1352
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 3 cut(s) 69, 210, 957
SatI GCNGC 2 cut(s) 1029, 1350
Sau3AI GATC 9 cut(s) 3, 182, 282, 812, 835, 864, 1048, 1255, 1354
Sau96I GGNCC 4 cut(s) 59, 759, 1227, 1272
SchI GAGTC 3 cut(s) 561, 1100, 1298
ScrFI CCNGG 2 cut(s) 405, 911
SduI GDGCHC 4 cut(s) 348, 931, 1059, 1292
SfaNI GCATC 4 cut(s) 25, 528, 658, 1336
SinI GGWCC 3 cut(s) 59, 1227, 1272
SmlI CTYRAG 2 cut(s) 107, 261
SmoI CTYRAG 2 cut(s) 107, 261
Sse9I AATT 7 cut(s) 123, 147, 332, 376, 472, 696, 921
SsiI CCGC 2 cut(s) 479, 1148
SspMI CTAG 3 cut(s) 590, 630, 726
StyD4I CCNGG 2 cut(s) 403, 909
StyI CCWWGG 1 cut(s) 1023
TaaI ACNGT 2 cut(s) 325, 1211
TaqI TCGA 2 cut(s) 1047, 1178
TasI AATT 7 cut(s) 123, 147, 332, 376, 472, 696, 921
TfiI GAWTC 5 cut(s) 92, 683, 721, 829, 1100
Tru1I TTAA 3 cut(s) 69, 210, 957
Tru9I TTAA 3 cut(s) 69, 210, 957
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 2 cut(s) 1028, 1349
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 5 cut(s) 105, 140, 387, 606, 803
TspRI CASTG 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 825
VpaK11BI GGWCC 3 cut(s) 59, 1227, 1272
XagI CCTNNNNNAGG 1 cut(s) 1279
XapI RAATTY 2 cut(s) 332, 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
XspI CTAG 3 cut(s) 590, 630, 726
Zsp2I ATGCAT 2 cut(s) 414, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.