pycom13g08790

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000194
Physical Location & Seq
Forward (+)
5820664 .. 5821005
342 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08790.1

Sequence Viewer

Length: 342 bp
ATGCAAGTGGCTAGTAAGTGTGCTATATGTGGAGAAGCGGAGGAGACGGAGCATCACTTGTTTTTCCAATGTGAGTTTAGTCGTGTGCTATGGTATTGTTGTTCCTTGCAGCTGGATGTGGCATCTTTGGAAGGCAAGGATTTCTGCGAGTATTGGCAGATGCTCTGTGCCCGGTTTCGTGGTAATGACCGAAAGGAGGAATTGATGAAGGAGTGTGTGTTTATCATGTGGCGCATATGGAAGAGCAGGAATGAAATGGTGTTTAAGGGAATCTTGGCTAATCCCATGGAGATGGTGAATTTGGTAAGGGGTCATATCTTGGAGTTTAGAGCTGGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.43

Weight (kDa)

5.92

Isoelectric Point (pI)

25.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 1 - 31 6e-07 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 38
AcsI RAATTY 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 196
AluBI AGCT 2 cut(s) 112, 332
AluI AGCT 2 cut(s) 112, 332
Alw26I GTCTC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 298
AspLEI GCGC 1 cut(s) 234
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 286
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 12
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 3 cut(s) 61, 131, 150
BpuMI CCSGG 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 1 cut(s) 38
BspQI GCTCTTC 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 170
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 121
CfoI GCGC 1 cut(s) 234
CviAII CATG 2 cut(s) 226, 286
CviJI RGCY 4 cut(s) 11, 112, 278, 332
CviKI_1 RGCY 4 cut(s) 11, 112, 278, 332
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 2 cut(s) 229, 289
FaiI YATR 8 cut(s) 26, 28, 91, 227, 236, 238, 287, 315
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 2 cut(s) 225, 285
FauNDI CATATG 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 110
GsaI CCCAGC 1 cut(s) 336
HapII CCGG 1 cut(s) 172
HhaI GCGC 1 cut(s) 234
Hin1II CATG 2 cut(s) 229, 289
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 1 cut(s) 270
HpaII CCGG 1 cut(s) 172
HphI GGTGA 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 125, 202
HpyCH4V TGCA 2 cut(s) 4, 109
Hsp92II CATG 2 cut(s) 229, 289
HspAI GCGC 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 4 cut(s) 98, 185, 232, 318
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 3 cut(s) 61, 131, 150
MaeI CTAG 1 cut(s) 12
MboII GAAGA 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 2 cut(s) 200, 298
MnlI CCTC 2 cut(s) 34, 190
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 172
NciI CCSGG 1 cut(s) 172
NcoI CCATGG 1 cut(s) 285
NdeI CATATG 1 cut(s) 236
NlaIII CATG 2 cut(s) 229, 289
PciSI GCTCTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 270
PkrI GCNGC 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 172
SetI ASST 2 cut(s) 114, 334
SfaNI GCATC 3 cut(s) 61, 131, 150
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 2 cut(s) 200, 298
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 285
TaqII GACCGA 1 cut(s) 204
TasI AATT 2 cut(s) 200, 298
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 221, 267
TspGWI ACGGA 1 cut(s) 62
XapI RAATTY 1 cut(s) 298
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.