Rmu_sc0009158.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009158.1
OG0000194
Physical Location & Seq
Reverse (-)
2518 .. 2946
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009158.1_g000001.1.cds

Sequence Viewer

Length: 429 bp
atgagcaggctgatatgtgaattattaaatattaatgtggttgacaatccggggaaatatctagggttaccgactctctgggggagatcaaaaaaggaagccctttggtatataaaggagagaatccaccagaaaattgatggatggaagcaaggagctttgtctacggctggaaaggaagttctaataaagtcaattgccactgcgattccagcgtatcctatggcttgtttcaagttccctgcttcattatgcgctgagatcaactccctacttggcaatttctggtgggggtccaatgatgctggaaataagatccactggaagagttggggcatttggggctcacaaaggcggagggcgacatgggttttagggacctacaagatttcaacgtggccctcatcgcaaagcagtgttggcgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

142

Amino Acids

15.97

Weight (kDa)

9.71

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 164
AciI CCGC 1 cut(s) 355
AclWI GGATC 1 cut(s) 310
AgsI TTSAA 2 cut(s) 235, 393
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AlwI GGATC 1 cut(s) 310
AoxI GGCC 1 cut(s) 398
AseI ATTAAT 1 cut(s) 33
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 3 cut(s) 294, 378, 399
AsuC2I CCSGG 1 cut(s) 51
AvaII GGWCC 2 cut(s) 294, 378
BanII GRGCYC 1 cut(s) 347
BccI CCATC 2 cut(s) 134, 138
BceAI ACGGC 1 cut(s) 183
BciVI GTATCC 1 cut(s) 228
BcnI CCSGG 1 cut(s) 51
BfaI CTAG 1 cut(s) 62
BfuI GTATCC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 2 cut(s) 294, 378
BmgT120I GGNCC 3 cut(s) 294, 378, 399
BmiI GGNNCC 2 cut(s) 295, 379
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 292
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BpuMI CCSGG 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 326
BshFI GGCC 1 cut(s) 400
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 3 cut(s) 86, 261, 315
BspACI CCGC 1 cut(s) 355
BspANI GGCC 1 cut(s) 400
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 295, 379
BspPI GGATC 1 cut(s) 310
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 3 cut(s) 86, 261, 315
Bst6I CTCTTC 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 258
BstEII GGTNACC 1 cut(s) 66
BstF5I GGATG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 3 cut(s) 89, 264, 318
BstMBI GATC 3 cut(s) 86, 261, 315
BstMWI GCNNNNNNNGC 4 cut(s) 212, 342, 406, 420
BstPI GGTNACC 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 400
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 1 cut(s) 149
BtsI GCAGTG 2 cut(s) 201, 421
BtsIMutI CAGTG 3 cut(s) 201, 319, 421
Cac8I GCNNGC 1 cut(s) 8
CfoI GCGC 1 cut(s) 257
Cfr13I GGNCC 3 cut(s) 294, 378, 399
CviAII CATG 1 cut(s) 366
CviJI RGCY 7 cut(s) 10, 101, 158, 170, 227, 345, 400
CviKI_1 RGCY 7 cut(s) 10, 101, 158, 170, 227, 345, 400
DdeI CTNAG 1 cut(s) 258
DpnI GATC 3 cut(s) 88, 263, 317
DpnII GATC 3 cut(s) 86, 261, 315
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
EciI GGCGGA 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 294, 378
Eco91I GGTNACC 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 378
EcoO65I GGTNACC 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 347
FaeI CATG 1 cut(s) 369
FaiI YATR 6 cut(s) 16, 111, 113, 224, 253, 367
FaqI GGGAC 1 cut(s) 391
FatI CATG 1 cut(s) 365
FblI GTMKAC 1 cut(s) 164
FokI GGATG 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 347
FspBI CTAG 1 cut(s) 62
GlaI GCGC 1 cut(s) 256
HaeIII GGCC 1 cut(s) 400
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 257
Hin1II CATG 1 cut(s) 369
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 3 cut(s) 73, 123, 208
HpaII CCGG 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 43, 165
Hpy8I GTNNAC 2 cut(s) 43, 165
HpyCH4IV ACGT 1 cut(s) 395
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 342, 406, 420
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 395
Hsp92II CATG 1 cut(s) 369
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 3 cut(s) 86, 261, 315
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 9 cut(s) 63, 64, 143, 156, 225, 255, 271, 291, 307
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 66
MalI GATC 3 cut(s) 88, 263, 317
MboI GATC 3 cut(s) 86, 261, 315
MboII GAAGA 1 cut(s) 337
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 347
MluCI AATT 4 cut(s) 20, 135, 195, 280
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 2 cut(s) 351, 412
MseI TTAA 2 cut(s) 26, 33
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 195
MwoI GCNNNNNNNGC 4 cut(s) 212, 342, 406, 420
NciI CCSGG 1 cut(s) 51
NdeII GATC 3 cut(s) 86, 261, 315
NlaIII CATG 1 cut(s) 369
NlaIV GGNNCC 2 cut(s) 295, 379
PfeI GAWTC 2 cut(s) 123, 208
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 378
PshBI ATTAAT 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 378
PspEI GGTNACC 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 295, 379
PspPI GGNCC 3 cut(s) 294, 378, 399
PspPPI RGGWCCY 1 cut(s) 378
PsuI RGATCY 1 cut(s) 315
SaqAI TTAA 2 cut(s) 26, 33
Sau3AI GATC 3 cut(s) 86, 261, 315
Sau96I GGNCC 3 cut(s) 294, 378, 399
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 347
SetI ASST 3 cut(s) 160, 383, 398
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 2 cut(s) 294, 378
Sse9I AATT 4 cut(s) 20, 135, 195, 280
SsiI CCGC 1 cut(s) 355
SspI AATATT 1 cut(s) 31
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 49
TaiI ACGT 1 cut(s) 398
TasI AATT 4 cut(s) 20, 135, 195, 280
TfiI GAWTC 2 cut(s) 123, 208
Tru1I TTAA 2 cut(s) 26, 33
Tru9I TTAA 2 cut(s) 26, 33
TscAI CASTG 3 cut(s) 208, 326, 421
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 3 cut(s) 208, 326, 421
VpaK11BI GGWCC 2 cut(s) 294, 378
VspI ATTAAT 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.