pycom11g04440

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000194
Physical Location & Seq
Reverse (-)
3436672 .. 3437428
757 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g04440.1

Sequence Viewer

Length: 714 bp
ATGCCACCTTGTACATCAAATGTATTGTGCACTTTCTTTTCCTATCTGCTGGACATTTTTTGTGTGGCGTCGGGGCAGAAGGTAAATTTGGAGAAATCCAATGTATATTTTGGGGCTAACGTTCCGAAGGAGAATGCTGATCAGATGGGGAACGCCCTTGGTATGACGGTAGTAATCAATCCGGGAACATATTTGGGGGTCCCTGCCATTTGGGGTCGGTCGAAAAAGCATGGTCTTGCTTATGTGAAAGGAAGAGTAATGGAAAAGCTACAAGGGTGGAAACAAAATACTCTTTCCCGTGCCGGTAAAGAGGTTTTAATTAAGGCTGTTATCCAAGCTATCCCGGCATACCCAATGTGCATTTTCAAATTCCCAGCCGCTGTTTGTAAGGAATTGGATGTGTTGGTGGCTGGGTTTTGGTGGGGATGTAAGGAGGGAGCCCACAAGATTCACTGGGTTTCAAATGAGGTTTTGGGTTTGCCCAAAGACATGGGTGGTTTAGGCTTCAGAAATTTTCAGGAATTTAATGATGCTCTGCTTGCTAAACAGTGCTGGCGTTTAATCACGGAACCGGATTCGCTGTGGGCAAAGGTGATTAAGGCTCGGTATTTTCCACATAGCTCGATCTGGGATGCGAAGAAGGGTGGGCGGGCCTCTTGGGCGTGGAGCAGCCTCATCTGTGGCAGGGACTTGATTAGGGAGGGCTCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

238

Amino Acids

26.38

Weight (kDa)

9.33

Isoelectric Point (pI)

26.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 378, 649
AclI AACGTT 1 cut(s) 120
AcsI RAATTY 4 cut(s) 85, 368, 511, 521
AcuI CTGAAG 1 cut(s) 490
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 2 cut(s) 367, 462
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 3 cut(s) 268, 338, 621
AluI AGCT 3 cut(s) 268, 338, 621
Alw21I GWGCWC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 380
AoxI GGCC 1 cut(s) 651
ApaLI GTGCAC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 669
ApoI RAATTY 4 cut(s) 85, 368, 511, 521
AspS9I GGNCC 2 cut(s) 199, 651
AsuC2I CCSGG 2 cut(s) 183, 344
AsuHPI GGTGA 1 cut(s) 604
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 32
BanII GRGCYC 2 cut(s) 442, 707
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 681
BccI CCATC 1 cut(s) 139
BclI TGATCA 1 cut(s) 139
BcnI CCSGG 2 cut(s) 183, 344
BglI GCCNNNNNGGC 1 cut(s) 659
BisI GCNGC 2 cut(s) 378, 670
BlsI GCNGC 2 cut(s) 379, 671
Bme1390I CCNGG 2 cut(s) 183, 344
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 199, 651
BmiI GGNNCC 5 cut(s) 200, 201, 439, 570, 706
BmrFI CCNGG 2 cut(s) 183, 344
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 2 cut(s) 520, 622
BmuI ACTGGG 1 cut(s) 463
BpuMI CCSGG 2 cut(s) 183, 344
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 1 cut(s) 571
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 458
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 3 cut(s) 403, 431, 637
BseNI ACTGG 1 cut(s) 458
BseSI GKGCMC 1 cut(s) 32
BseXI GCAGC 1 cut(s) 681
BseYI CCCAGC 2 cut(s) 373, 410
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 1 cut(s) 653
BsiEI CGRYCG 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 4 cut(s) 182, 303, 344, 572
BslFI GGGAC 2 cut(s) 185, 701
BsmFI GGGAC 2 cut(s) 185, 701
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 1 cut(s) 653
Bsp1286I GDGCHC 3 cut(s) 32, 442, 707
Bsp1407I TGTACA 1 cut(s) 11
Bsp143I GATC 2 cut(s) 139, 624
BspACI CCGC 2 cut(s) 378, 649
BspANI GGCC 1 cut(s) 653
BspLI GGNNCC 5 cut(s) 200, 201, 439, 570, 706
BsrFI RCCGGY 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 11
BsrI ACTGG 1 cut(s) 458
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 2 cut(s) 139, 624
BssNI GRCGYC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 169, 549
Bst6I CTCTTC 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 540, 554, 651
BstF5I GGATG 3 cut(s) 403, 431, 637
BstKTI GATC 2 cut(s) 142, 627
BstMBI GATC 2 cut(s) 139, 624
BstMCI CGRYCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 3 cut(s) 344, 539, 659
BstSCI CCNGG 2 cut(s) 181, 342
BstSLI GKGCMC 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 681
BstXI CCANNNNNNTGG 1 cut(s) 490
BsuRI GGCC 1 cut(s) 653
BtsCI GGATG 3 cut(s) 403, 431, 637
BtsIMutI CAGTG 2 cut(s) 451, 554
Cac8I GCNNGC 3 cut(s) 540, 554, 651
CaiI CAGNNNCTG 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 199, 651
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 230, 490
CviQI GTAC 1 cut(s) 12
DpnI GATC 2 cut(s) 141, 626
DpnII GATC 2 cut(s) 139, 624
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 2 cut(s) 442, 707
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 2 cut(s) 442, 707
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 233, 493
FaiI YATR 8 cut(s) 106, 164, 190, 231, 243, 349, 491, 618
FaqI GGGAC 2 cut(s) 185, 701
FatI CATG 2 cut(s) 229, 489
FauI CCCGC 1 cut(s) 642
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 378, 670
FokI GGATG 3 cut(s) 410, 438, 644
FriOI GRGCYC 2 cut(s) 442, 707
Fsp4HI GCNGC 2 cut(s) 378, 670
GluI GCNGC 2 cut(s) 378, 670
GsaI CCCAGC 2 cut(s) 377, 414
HaeIII GGCC 1 cut(s) 653
HapII CCGG 4 cut(s) 182, 303, 344, 572
HgaI GACGC 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 2 cut(s) 233, 493
HinfI GANTC 2 cut(s) 448, 575
HpaII CCGG 4 cut(s) 182, 303, 344, 572
HphI GGTGA 1 cut(s) 604
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 3 cut(s) 126, 144, 509
Hpy188III TCNNGA 1 cut(s) 518
Hpy8I GTNNAC 1 cut(s) 30
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 3 cut(s) 73, 121, 634
HpyCH4III ACNGT 2 cut(s) 169, 549
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 30, 360
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 539, 659
HpySE526I ACGT 1 cut(s) 120
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 2 cut(s) 233, 493
KflI GGGWCCC 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 2 cut(s) 139, 624
LmnI GCTCC 3 cut(s) 437, 666, 710
Lsp1109I GCAGC 1 cut(s) 681
LweI GCATC 2 cut(s) 520, 622
MaeII ACGT 1 cut(s) 120
MalI GATC 2 cut(s) 141, 626
MboI GATC 2 cut(s) 139, 624
MboII GAAGA 2 cut(s) 264, 649
MhlI GDGCHC 3 cut(s) 32, 442, 707
MluCI AATT 6 cut(s) 85, 318, 368, 392, 511, 521
MnlI CCTC 6 cut(s) 304, 427, 460, 664, 683, 694
MseI TTAA 5 cut(s) 317, 321, 525, 560, 597
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 4 cut(s) 182, 303, 344, 572
MspR9I CCNGG 2 cut(s) 183, 344
Mva1269I GAATGC 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 344, 539, 659
NciI CCSGG 2 cut(s) 183, 344
NdeII GATC 2 cut(s) 139, 624
NlaIII CATG 2 cut(s) 233, 493
NlaIV GGNNCC 5 cut(s) 200, 201, 439, 570, 706
PacI TTAATTAA 1 cut(s) 321
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 448, 575
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 2 cut(s) 379, 671
PpuMI RGGWCCY 1 cut(s) 199
Psp1406I AACGTT 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 199
PspFI CCCAGC 2 cut(s) 373, 410
PspN4I GGNNCC 5 cut(s) 200, 201, 439, 570, 706
PspPI GGNCC 2 cut(s) 199, 651
PspPPI RGGWCCY 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 380
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 5 cut(s) 317, 321, 525, 560, 597
SatI GCNGC 2 cut(s) 378, 670
Sau3AI GATC 2 cut(s) 139, 624
Sau96I GGNCC 2 cut(s) 199, 651
ScrFI CCNGG 2 cut(s) 183, 344
SduI GDGCHC 3 cut(s) 32, 442, 707
SetI ASST 9 cut(s) 10, 84, 123, 270, 315, 340, 471, 594, 623
SfaNI GCATC 2 cut(s) 520, 622
SinI GGWCC 1 cut(s) 199
Sse9I AATT 6 cut(s) 85, 318, 368, 392, 511, 521
SsiI CCGC 2 cut(s) 378, 649
StyD4I CCNGG 2 cut(s) 181, 342
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 169, 549
TaiI ACGT 1 cut(s) 123
TaqI TCGA 2 cut(s) 221, 623
TaqII GACCGA 1 cut(s) 207
TasI AATT 6 cut(s) 85, 318, 368, 392, 511, 521
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 2 cut(s) 448, 575
Tru1I TTAA 5 cut(s) 317, 321, 525, 560, 597
Tru9I TTAA 5 cut(s) 317, 321, 525, 560, 597
TscAI CASTG 2 cut(s) 458, 554
TseI GCWGC 1 cut(s) 669
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 2 cut(s) 458, 554
VneI GTGCAC 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 4 cut(s) 85, 368, 511, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.