Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 126 - 254 | 3.4e-17 | Cytochrome P450 |
| Exo_endo_phos | PF03372 | 265 - 420 | 1.6e-07 | Endonuclease/Exonuclease/phosphatase family |
| RVT_1 | PF00078 | 697 - 952 | 8.6e-31 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| zf-RVT | PF13966 | 1241 - 1311 | 2.6e-16 | zinc-binding in reverse transcriptase |
| RVT_3 | PF13456 | 1429 - 1550 | 4.2e-19 | Reverse transcriptase-like |
| p450 | PF00067 | 1553 - 1651 | 2.2e-26 | Cytochrome P450 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2139 |
| AarI | CACCTGC | 1 cut(s) | 602 |
| AatII | GACGTC | 2 cut(s) | 3233, 4589 |
| Acc36I | ACCTGC | 6 cut(s) | 602, 718, 1079, 3518, 3748, 3903 |
| AccB1I | GGYRCC | 3 cut(s) | 1930, 3606, 3701 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3747, 3967 |
| AccBSI | CCGCTC | 1 cut(s) | 235 |
| AccI | GTMKAC | 1 cut(s) | 4530 |
| AccII | CGCG | 6 cut(s) | 2393, 2686, 2904, 4295, 4424, 4601 |
| AccIII | TCCGGA | 1 cut(s) | 3641 |
| AclI | AACGTT | 1 cut(s) | 2810 |
| AcoI | YGGCCR | 6 cut(s) | 112, 1056, 2310, 2607, 2985, 4410 |
| AcsI | RAATTY | 6 cut(s) | 1070, 1310, 1914, 3955, 4052, 4163 |
| AcuI | CTGAAG | 6 cut(s) | 1030, 1505, 2425, 2562, 2718, 2726 |
| AcvI | CACGTG | 2 cut(s) | 1134, 4651 |
| AcyI | GRCGYC | 4 cut(s) | 892, 3230, 3607, 4586 |
| AdeI | CACNNNGTG | 2 cut(s) | 3616, 4639 |
| AfaI | GTAC | 7 cut(s) | 132, 765, 2032, 2788, 4115, 4384, 4849 |
| AflII | CTTAAG | 1 cut(s) | 1442 |
| AflIII | ACRYGT | 2 cut(s) | 1234, 4650 |
| AgeI | ACCGGT | 1 cut(s) | 1404 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1238 |
| AjiI | CACGTC | 1 cut(s) | 1237 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4044, 4076 |
| Alw21I | GWGCWC | 5 cut(s) | 156, 1599, 2540, 2587, 4362 |
| Alw44I | GTGCAC | 1 cut(s) | 2536 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1675 |
| Ama87I | CYCGRG | 1 cut(s) | 1926 |
| Aor13HI | TCCGGA | 1 cut(s) | 3641 |
| ApaLI | GTGCAC | 1 cut(s) | 2536 |
| ApoI | RAATTY | 6 cut(s) | 1070, 1310, 1914, 3955, 4052, 4163 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 20, 52, 4721, 4753 |
| AsiGI | ACCGGT | 1 cut(s) | 1404 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1287, 2265, 4767 |
| AspA2I | CCTAGG | 2 cut(s) | 4262, 4610 |
| AspLEI | GCGC | 8 cut(s) | 1519, 2104, 2395, 2686, 3609, 3680, 4403, 4576 |
| AsuC2I | CCSGG | 5 cut(s) | 1877, 1935, 2470, 2920, 3491 |
| AsuII | TTCGAA | 2 cut(s) | 266, 3064 |
| AsuNHI | GCTAGC | 1 cut(s) | 3193 |
| AvaI | CYCGRG | 1 cut(s) | 1926 |
| AvaII | GGWCC | 7 cut(s) | 688, 1255, 1937, 3738, 3760, 4272, 4737 |
| AvrII | CCTAGG | 2 cut(s) | 4262, 4610 |
| AxyI | CCTNAGG | 1 cut(s) | 1851 |
| BaeGI | GKGCMC | 3 cut(s) | 1933, 2540, 3706 |
| BalI | TGGCCA | 2 cut(s) | 2312, 2987 |
| BamHI | GGATCC | 2 cut(s) | 1391, 2817 |
| BanI | GGYRCC | 3 cut(s) | 1930, 3606, 3701 |
| BanII | GRGCYC | 3 cut(s) | 65, 156, 1599 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4831, 4863 |
| BauI | CACGAG | 2 cut(s) | 813, 1733 |
| BbrPI | CACGTG | 2 cut(s) | 1134, 4651 |
| BbsI | GAAGAC | 3 cut(s) | 26, 1719, 3597 |
| Bbv12I | GWGCWC | 5 cut(s) | 156, 1599, 2540, 2587, 4362 |
| BceAI | ACGGC | 4 cut(s) | 127, 1776, 2608, 2622 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 191, 225 |
| BciVI | GTATCC | 3 cut(s) | 1115, 2446, 4303 |
| BclI | TGATCA | 1 cut(s) | 4509 |
| BcnI | CCSGG | 5 cut(s) | 1877, 1935, 2470, 2920, 3491 |
| BfmI | CTRYAG | 3 cut(s) | 2855, 3243, 3755 |
| BfoI | RGCGCY | 3 cut(s) | 1520, 3610, 3681 |
| BfrI | CTTAAG | 1 cut(s) | 1442 |
| BfuAI | ACCTGC | 6 cut(s) | 602, 718, 1079, 3518, 3748, 3903 |
| BfuI | GTATCC | 3 cut(s) | 1115, 2446, 4303 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1760, 2924 |
| BglII | AGATCT | 1 cut(s) | 1567 |
| BlnI | CCTAGG | 2 cut(s) | 4262, 4610 |
| BlpI | GCTNAGC | 2 cut(s) | 4491, 4644 |
| Bme18I | GGWCC | 7 cut(s) | 688, 1255, 1937, 3738, 3760, 4272, 4737 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1238 |
| BmeT110I | CYCGRG | 1 cut(s) | 1926 |
| BmgBI | CACGTC | 1 cut(s) | 1237 |
| BmrI | ACTGGG | 1 cut(s) | 4388 |
| BmtI | GCTAGC | 1 cut(s) | 3197 |
| BmuI | ACTGGG | 1 cut(s) | 4388 |
| BpiI | GAAGAC | 3 cut(s) | 26, 1719, 3597 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 816, 848, 3288, 3320 |
| BpmI | CTGGAG | 1 cut(s) | 1318 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1430, 2151, 3560, 4397 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 4491, 4644 |
| Bpu14I | TTCGAA | 2 cut(s) | 266, 3064 |
| BpuEI | CTTGAG | 1 cut(s) | 170 |
| BpuMI | CCSGG | 5 cut(s) | 1877, 1935, 2470, 2920, 3491 |
| BsaAI | YACGTR | 2 cut(s) | 1134, 4651 |
| BsaHI | GRCGYC | 4 cut(s) | 892, 3230, 3607, 4586 |
| BsaI | GGTCTC | 2 cut(s) | 836, 4252 |
| BsaWI | WCCGGW | 4 cut(s) | 161, 1404, 1939, 3641 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 281, 311, 1980, 2010 |
| Bse118I | RCCGGY | 3 cut(s) | 1404, 4116, 4936 |
| Bse1I | ACTGG | 9 cut(s) | 1386, 1468, 1607, 1876, 3972, 4182, 4256, 4383, 4855 |
| Bse21I | CCTNAGG | 1 cut(s) | 1851 |
| Bse3DI | GCAATG | 2 cut(s) | 522, 2115 |
| BseAI | TCCGGA | 1 cut(s) | 3641 |
| BseMI | GCAATG | 2 cut(s) | 522, 2115 |
| BseMII | CTCAG | 9 cut(s) | 78, 944, 1444, 1494, 1533, 1585, 1682, 1842, 2575 |
| BseNI | ACTGG | 9 cut(s) | 1386, 1468, 1607, 1876, 3972, 4182, 4256, 4383, 4855 |
| BseRI | GAGGAG | 6 cut(s) | 305, 509, 1528, 1751, 3933, 4052 |
| BseSI | GKGCMC | 3 cut(s) | 1933, 2540, 3706 |
| BseX3I | CGGCCG | 1 cut(s) | 4410 |
| BseYI | CCCAGC | 3 cut(s) | 2383, 4332, 4352 |
| Bsh1236I | CGCG | 6 cut(s) | 2393, 2686, 2904, 4295, 4424, 4601 |
| Bsh1285I | CGRYCG | 3 cut(s) | 2469, 4413, 4530 |
| BshNI | GGYRCC | 3 cut(s) | 1930, 3606, 3701 |
| BshTI | ACCGGT | 1 cut(s) | 1404 |
| BsiEI | CGRYCG | 3 cut(s) | 2469, 4413, 4530 |
| BsiHKAI | GWGCWC | 5 cut(s) | 156, 1599, 2540, 2587, 4362 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1926 |
| BslFI | GGGAC | 7 cut(s) | 646, 934, 1950, 3059, 3217, 3746, 4285 |
| BsmBI | CGTCTC | 1 cut(s) | 3826 |
| BsmFI | GGGAC | 7 cut(s) | 646, 934, 1950, 3059, 3217, 3746, 4285 |
| BsmI | GAATGC | 5 cut(s) | 98, 214, 274, 2023, 3564 |
| Bso31I | GGTCTC | 2 cut(s) | 836, 4252 |
| BsoBI | CYCGRG | 1 cut(s) | 1926 |
| Bsp119I | TTCGAA | 2 cut(s) | 266, 3064 |
| Bsp1286I | GDGCHC | 8 cut(s) | 65, 156, 1599, 1933, 2540, 2587, 3706, 4362 |
| Bsp13I | TCCGGA | 1 cut(s) | 3641 |
| Bsp1407I | TGTACA | 1 cut(s) | 763 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 4491, 4644 |
| Bsp19I | CCATGG | 3 cut(s) | 2988, 3097, 3657 |
| Bsp68I | TCGCGA | 2 cut(s) | 2904, 4424 |
| BspCNI | CTCAG | 9 cut(s) | 77, 945, 1443, 1495, 1534, 1584, 1681, 1843, 2574 |
| BspEI | TCCGGA | 1 cut(s) | 3641 |
| BspFNI | CGCG | 6 cut(s) | 2393, 2686, 2904, 4295, 4424, 4601 |
| BspMAI | CTGCAG | 2 cut(s) | 2859, 3759 |
| BspMI | ACCTGC | 6 cut(s) | 602, 718, 1079, 3518, 3748, 3903 |
| BspOI | GCTAGC | 1 cut(s) | 3197 |
| BspQI | GCTCTTC | 1 cut(s) | 1587 |
| BspT104I | TTCGAA | 2 cut(s) | 266, 3064 |
| BspT107I | GGYRCC | 3 cut(s) | 1930, 3606, 3701 |
| BspTI | CTTAAG | 1 cut(s) | 1442 |
| BspTNI | GGTCTC | 2 cut(s) | 836, 4252 |
| BsrBI | CCGCTC | 1 cut(s) | 235 |
| BsrDI | GCAATG | 2 cut(s) | 522, 2115 |
| BsrFI | RCCGGY | 3 cut(s) | 1404, 4116, 4936 |
| BsrGI | TGTACA | 1 cut(s) | 763 |
| BsrI | ACTGG | 9 cut(s) | 1386, 1468, 1607, 1876, 3972, 4182, 4256, 4383, 4855 |
| BssAI | RCCGGY | 3 cut(s) | 1404, 4116, 4936 |
| BssNI | GRCGYC | 4 cut(s) | 892, 3230, 3607, 4586 |
| BssSI | CACGAG | 2 cut(s) | 813, 1733 |
| BssT1I | CCWWGG | 9 cut(s) | 555, 1720, 2988, 3097, 3410, 3657, 3807, 4262, 4610 |
| Bst2BI | CACGAG | 2 cut(s) | 813, 1733 |
| Bst6I | CTCTTC | 5 cut(s) | 455, 1161, 1587, 3433, 3951 |
| BstACI | GRCGYC | 4 cut(s) | 892, 3230, 3607, 4586 |
| BstAFI | CTTAAG | 1 cut(s) | 1442 |
| BstAUI | TGTACA | 1 cut(s) | 763 |
| BstBAI | YACGTR | 2 cut(s) | 1134, 4651 |
| BstBI | TTCGAA | 2 cut(s) | 266, 3064 |
| BstC8I | GCNNGC | 8 cut(s) | 913, 1060, 2688, 2719, 2859, 3195, 3755, 4237 |
| BstDSI | CCRYGG | 7 cut(s) | 1180, 2430, 2590, 2610, 2988, 3097, 3657 |
| BstEII | GGTNACC | 2 cut(s) | 164, 2504 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 683, 3121 |
| BstFNI | CGCG | 6 cut(s) | 2393, 2686, 2904, 4295, 4424, 4601 |
| BstH2I | RGCGCY | 3 cut(s) | 1520, 3610, 3681 |
| BstHHI | GCGC | 8 cut(s) | 1519, 2104, 2395, 2686, 3609, 3680, 4403, 4576 |
| BstMCI | CGRYCG | 3 cut(s) | 2469, 4413, 4530 |
| BstNSI | RCATGY | 2 cut(s) | 2424, 3844 |
| BstPI | GGTNACC | 2 cut(s) | 164, 2504 |
| BstSFI | CTRYAG | 3 cut(s) | 2855, 3243, 3755 |
| BstSLI | GKGCMC | 3 cut(s) | 1933, 2540, 3706 |
| BstUI | CGCG | 6 cut(s) | 2393, 2686, 2904, 4295, 4424, 4601 |
| BstV2I | GAAGAC | 3 cut(s) | 26, 1719, 3597 |
| BstX2I | RGATCY | 6 cut(s) | 1105, 1391, 1567, 2723, 2817, 4723 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 713 |
| BstYI | RGATCY | 6 cut(s) | 1105, 1391, 1567, 2723, 2817, 4723 |
| BstZI | CGGCCG | 1 cut(s) | 4410 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1851 |
| BsuI | GTATCC | 3 cut(s) | 1115, 2446, 4303 |
| BtgI | CCRYGG | 7 cut(s) | 1180, 2430, 2590, 2610, 2988, 3097, 3657 |
| BtgZI | GCGATG | 2 cut(s) | 3805, 4206 |
| BtrI | CACGTC | 1 cut(s) | 1237 |
| BtsI | GCAGTG | 3 cut(s) | 279, 2273, 3882 |
| BtuMI | TCGCGA | 2 cut(s) | 2904, 4424 |
| BveI | ACCTGC | 6 cut(s) | 602, 718, 1079, 3518, 3748, 3903 |
| Cac8I | GCNNGC | 8 cut(s) | 913, 1060, 2688, 2719, 2859, 3195, 3755, 4237 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1675 |
| CfoI | GCGC | 8 cut(s) | 1519, 2104, 2395, 2686, 3609, 3680, 4403, 4576 |
| Cfr10I | RCCGGY | 3 cut(s) | 1404, 4116, 4936 |
| CseI | GACGC | 3 cut(s) | 201, 881, 4301 |
| Csp6I | GTAC | 7 cut(s) | 131, 764, 2031, 2787, 4114, 4383, 4848 |
| CspAI | ACCGGT | 1 cut(s) | 1404 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1709, 1744, 4645, 4680 |
| CviQI | GTAC | 7 cut(s) | 131, 764, 2031, 2787, 4114, 4383, 4848 |
| DinI | GGCGCC | 1 cut(s) | 3608 |
| DraI | TTTAAA | 2 cut(s) | 3283, 4105 |
| DraIII | CACNNNGTG | 2 cut(s) | 3616, 4639 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1238 |
| EaeI | YGGCCR | 6 cut(s) | 112, 1056, 2310, 2607, 2985, 4410 |
| EagI | CGGCCG | 1 cut(s) | 4410 |
| Eam1104I | CTCTTC | 5 cut(s) | 455, 1161, 1587, 3433, 3951 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1238 |
| EarI | CTCTTC | 5 cut(s) | 455, 1161, 1587, 3433, 3951 |
| EciI | GGCGGA | 1 cut(s) | 2736 |
| Ecl136II | GAGCTC | 2 cut(s) | 154, 1597 |
| EclXI | CGGCCG | 1 cut(s) | 4410 |
| Eco130I | CCWWGG | 9 cut(s) | 555, 1720, 2988, 3097, 3410, 3657, 3807, 4262, 4610 |
| Eco147I | AGGCCT | 1 cut(s) | 2547 |
| Eco24I | GRGCYC | 3 cut(s) | 65, 156, 1599 |
| Eco31I | GGTCTC | 2 cut(s) | 836, 4252 |
| Eco32I | GATATC | 1 cut(s) | 3129 |
| Eco47I | GGWCC | 7 cut(s) | 688, 1255, 1937, 3738, 3760, 4272, 4737 |
| Eco52I | CGGCCG | 1 cut(s) | 4410 |
| Eco53kI | GAGCTC | 2 cut(s) | 154, 1597 |
| Eco57I | CTGAAG | 6 cut(s) | 1030, 1505, 2425, 2562, 2718, 2726 |
| Eco72I | CACGTG | 2 cut(s) | 1134, 4651 |
| Eco81I | CCTNAGG | 1 cut(s) | 1851 |
| Eco88I | CYCGRG | 1 cut(s) | 1926 |
| Eco91I | GGTNACC | 2 cut(s) | 164, 2504 |
| EcoICRI | GAGCTC | 2 cut(s) | 154, 1597 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 683, 3121 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3760 |
| EcoO65I | GGTNACC | 2 cut(s) | 164, 2504 |
| EcoRI | GAATTC | 2 cut(s) | 1070, 3955 |
| EcoRV | GATATC | 1 cut(s) | 3129 |
| EcoT14I | CCWWGG | 9 cut(s) | 555, 1720, 2988, 3097, 3410, 3657, 3807, 4262, 4610 |
| EcoT22I | ATGCAT | 2 cut(s) | 3392, 4438 |
| EcoT38I | GRGCYC | 3 cut(s) | 65, 156, 1599 |
| EgeI | GGCGCC | 1 cut(s) | 3608 |
| EheI | GGCGCC | 1 cut(s) | 3608 |
| ErhI | CCWWGG | 9 cut(s) | 555, 1720, 2988, 3097, 3410, 3657, 3807, 4262, 4610 |
| Esp3I | CGTCTC | 1 cut(s) | 3826 |
| FaqI | GGGAC | 7 cut(s) | 646, 934, 1950, 3059, 3217, 3746, 4285 |
| FauI | CCCGC | 6 cut(s) | 1357, 2628, 2920, 3837, 4244, 4363 |
| FbaI | TGATCA | 1 cut(s) | 4509 |
| FblI | GTMKAC | 1 cut(s) | 4530 |
| FriOI | GRGCYC | 3 cut(s) | 65, 156, 1599 |
| GlaI | GCGC | 8 cut(s) | 1518, 2103, 2394, 2685, 3608, 3679, 4402, 4575 |
| GsaI | CCCAGC | 3 cut(s) | 2387, 4336, 4356 |
| GsuI | CTGGAG | 1 cut(s) | 1318 |
| HaeII | RGCGCY | 3 cut(s) | 1520, 3610, 3681 |
| HgaI | GACGC | 3 cut(s) | 201, 881, 4301 |
| HhaI | GCGC | 8 cut(s) | 1519, 2104, 2395, 2686, 3609, 3680, 4403, 4576 |
| Hin1I | GRCGYC | 4 cut(s) | 892, 3230, 3607, 4586 |
| Hin6I | GCGC | 8 cut(s) | 1517, 2102, 2393, 2684, 3607, 3678, 4401, 4574 |
| HinP1I | GCGC | 8 cut(s) | 1517, 2102, 2393, 2684, 3607, 3678, 4401, 4574 |
| HincII | GTYRAC | 6 cut(s) | 639, 3850, 4531, 4584, 4702, 4942 |
| HindII | GTYRAC | 6 cut(s) | 639, 3850, 4531, 4584, 4702, 4942 |
| HindIII | AAGCTT | 3 cut(s) | 3023, 3776, 4712 |
| HpaI | GTTAAC | 1 cut(s) | 4702 |
| Hpy99I | CGWCG | 3 cut(s) | 1241, 3232, 4591 |
| HpyCH4IV | ACGT | 9 cut(s) | 635, 1133, 1236, 2130, 2810, 3230, 4586, 4595, 4650 |
| HpySE526I | ACGT | 9 cut(s) | 635, 1133, 1236, 2130, 2810, 3230, 4586, 4595, 4650 |
| Hsp92I | GRCGYC | 4 cut(s) | 892, 3230, 3607, 4586 |
| HspAI | GCGC | 8 cut(s) | 1517, 2102, 2393, 2684, 3607, 3678, 4401, 4574 |
| KasI | GGCGCC | 1 cut(s) | 3606 |
| Kpn2I | TCCGGA | 1 cut(s) | 3641 |
| Ksp22I | TGATCA | 1 cut(s) | 4509 |
| KspAI | GTTAAC | 1 cut(s) | 4702 |
| LguI | GCTCTTC | 1 cut(s) | 1587 |
| LmnI | GCTCC | 6 cut(s) | 159, 496, 790, 3750, 4365, 4905 |
| MaeII | ACGT | 9 cut(s) | 635, 1133, 1236, 2130, 2810, 3230, 4586, 4595, 4650 |
| MbiI | CCGCTC | 1 cut(s) | 235 |
| MfeI | CAATTG | 1 cut(s) | 880 |
| MflI | RGATCY | 6 cut(s) | 1105, 1391, 1567, 2723, 2817, 4723 |
| MhlI | GDGCHC | 8 cut(s) | 65, 156, 1599, 1933, 2540, 2587, 3706, 4362 |
| MlsI | TGGCCA | 2 cut(s) | 2312, 2987 |
| MluNI | TGGCCA | 2 cut(s) | 2312, 2987 |
| Mly113I | GGCGCC | 1 cut(s) | 3607 |
| MlyI | GAGTC | 4 cut(s) | 1160, 1666, 1709, 4681 |
| MmeI | TCCRAC | 3 cut(s) | 3251, 3299, 4764 |
| Mox20I | TGGCCA | 2 cut(s) | 2312, 2987 |
| Mph1103I | ATGCAT | 2 cut(s) | 3392, 4438 |
| MroI | TCCGGA | 1 cut(s) | 3641 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1287, 2265, 4767 |
| MscI | TGGCCA | 2 cut(s) | 2312, 2987 |
| MslI | CAYNNNNRTG | 1 cut(s) | 176 |
| Msp20I | TGGCCA | 2 cut(s) | 2312, 2987 |
| MspA1I | CMGCKG | 2 cut(s) | 1889, 4406 |
| MspCI | CTTAAG | 1 cut(s) | 1442 |
| MunI | CAATTG | 1 cut(s) | 880 |
| Mva1269I | GAATGC | 5 cut(s) | 98, 214, 274, 2023, 3564 |
| MvnI | CGCG | 6 cut(s) | 2393, 2686, 2904, 4295, 4424, 4601 |
| NarI | GGCGCC | 1 cut(s) | 3607 |
| NciI | CCSGG | 5 cut(s) | 1877, 1935, 2470, 2920, 3491 |
| NcoI | CCATGG | 3 cut(s) | 2988, 3097, 3657 |
| NheI | GCTAGC | 1 cut(s) | 3193 |
| NruI | TCGCGA | 2 cut(s) | 2904, 4424 |
| NsiI | ATGCAT | 2 cut(s) | 3392, 4438 |
| NspI | RCATGY | 2 cut(s) | 2424, 3844 |
| NspV | TTCGAA | 2 cut(s) | 266, 3064 |
| PaqCI | CACCTGC | 1 cut(s) | 602 |
| PceI | AGGCCT | 1 cut(s) | 2547 |
| PciSI | GCTCTTC | 1 cut(s) | 1587 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3879, 4592 |
| PctI | GAATGC | 5 cut(s) | 98, 214, 274, 2023, 3564 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1287, 2265, 4767 |
| PflFI | GACNNNGTC | 1 cut(s) | 3854 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3747, 3967 |
| PfoI | TCCNGGA | 2 cut(s) | 2235, 3740 |
| PinAI | ACCGGT | 1 cut(s) | 1404 |
| PleI | GAGTC | 4 cut(s) | 1159, 1666, 1709, 4681 |
| PluTI | GGCGCC | 1 cut(s) | 3610 |
| PmaCI | CACGTG | 2 cut(s) | 1134, 4651 |
| PmlI | CACGTG | 2 cut(s) | 1134, 4651 |
| PpsI | GAGTC | 4 cut(s) | 1159, 1666, 1709, 4681 |
| Ppu21I | YACGTR | 2 cut(s) | 1134, 4651 |
| PpuMI | RGGWCCY | 1 cut(s) | 3760 |
| PsiI | TTATAA | 1 cut(s) | 2139 |
| Psp124BI | GAGCTC | 2 cut(s) | 156, 1599 |
| Psp1406I | AACGTT | 1 cut(s) | 2810 |
| Psp5II | RGGWCCY | 1 cut(s) | 3760 |
| PspCI | CACGTG | 2 cut(s) | 1134, 4651 |
| PspEI | GGTNACC | 2 cut(s) | 164, 2504 |
| PspFI | CCCAGC | 3 cut(s) | 2383, 4332, 4352 |
| PspPPI | RGGWCCY | 1 cut(s) | 3760 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2608, 2640 |
| PstI | CTGCAG | 2 cut(s) | 2859, 3759 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1675 |
| PsuI | RGATCY | 6 cut(s) | 1105, 1391, 1567, 2723, 2817, 4723 |
| PsyI | GACNNNGTC | 1 cut(s) | 3854 |
| RruI | TCGCGA | 2 cut(s) | 2904, 4424 |
| RsaI | GTAC | 7 cut(s) | 132, 765, 2032, 2788, 4115, 4384, 4849 |
| RsaNI | GTAC | 7 cut(s) | 131, 764, 2031, 2787, 4114, 4383, 4848 |
| RseI | CAYNNNNRTG | 1 cut(s) | 176 |
| SacI | GAGCTC | 2 cut(s) | 156, 1599 |
| SalI | GTCGAC | 1 cut(s) | 4529 |
| SapI | GCTCTTC | 1 cut(s) | 1587 |
| SbfI | CCTGCAGG | 1 cut(s) | 3759 |
| SchI | GAGTC | 4 cut(s) | 1160, 1666, 1709, 4681 |
| SdaI | CCTGCAGG | 1 cut(s) | 3759 |
| SduI | GDGCHC | 8 cut(s) | 65, 156, 1599, 1933, 2540, 2587, 3706, 4362 |
| SfcI | CTRYAG | 3 cut(s) | 2855, 3243, 3755 |
| SfoI | GGCGCC | 1 cut(s) | 3608 |
| SfuI | TTCGAA | 2 cut(s) | 266, 3064 |
| SinI | GGWCC | 7 cut(s) | 688, 1255, 1937, 3738, 3760, 4272, 4737 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 176 |
| SmlI | CTYRAG | 2 cut(s) | 149, 1442 |
| SmoI | CTYRAG | 2 cut(s) | 149, 1442 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 3759 |
| SseBI | AGGCCT | 1 cut(s) | 2547 |
| SspDI | GGCGCC | 1 cut(s) | 3606 |
| SspI | AATATT | 2 cut(s) | 712, 2245 |
| SstI | GAGCTC | 2 cut(s) | 156, 1599 |
| StuI | AGGCCT | 1 cut(s) | 2547 |
| StyI | CCWWGG | 9 cut(s) | 555, 1720, 2988, 3097, 3410, 3657, 3807, 4262, 4610 |
| TaiI | ACGT | 9 cut(s) | 638, 1136, 1239, 2133, 2813, 3233, 4589, 4598, 4653 |
| TaqII | GACCGA | 2 cut(s) | 1816, 2858 |
| TatI | WGTACW | 2 cut(s) | 763, 4847 |
| TauI | GCSGC | 6 cut(s) | 1058, 2485, 3820, 4298, 4409, 4412 |
| TspGWI | ACGGA | 8 cut(s) | 257, 1295, 1760, 3622, 4304, 4307, 4418, 4812 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3854 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3747, 3967 |
| Vha464I | CTTAAG | 1 cut(s) | 1442 |
| VneI | GTGCAC | 1 cut(s) | 2536 |
| VpaK11BI | GGWCC | 7 cut(s) | 688, 1255, 1937, 3738, 3760, 4272, 4737 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 683, 3121 |
| XapI | RAATTY | 6 cut(s) | 1070, 1310, 1914, 3955, 4052, 4163 |
| XbaI | TCTAGA | 1 cut(s) | 1796 |
| XceI | RCATGY | 2 cut(s) | 2424, 3844 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 403, 3617, 3664, 4370 |
| XmaJI | CCTAGG | 2 cut(s) | 4262, 4610 |
| XmiI | GTMKAC | 1 cut(s) | 4530 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1287, 2265, 4767 |
| ZraI | GACGTC | 2 cut(s) | 3231, 4587 |
| Zsp2I | ATGCAT | 2 cut(s) | 3392, 4438 |