FvH4_5g08844

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000194
Physical Location & Seq
Forward (+)
5088923 .. 5091089
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08844.t1

Sequence Viewer

Length: 1626 bp
ATGATCAAAGCTGTTGCCTTAGCAGTTCCAACCTTCTCTATGTCCGTGTTCAAGTATCCGGCTGCCCTCTGTAATCAAATTAACTCTGCCCTTGCAAATTTTTGGTGGGGTAAATCGGATTCTAATGGTATTCATTGGAAAAAATGGGAGTTTCTTTGTCTCCCTAAGTCCCAAGGCGGGTTAGGCTTTCGTAATATGGGTGACTTTAACTTAGCTTTGCTAGCTAAGCAGGCCTGGAGGCTCCATAGCAACCCAGATTCTCTCTGGTCTCGTGTCATTAAAGCTAAGTACTTTCCGAGCTGTACTTTTTGGGAAGCTAAGATAAGTTCCTCCCCTTCTTGGGCTTGGGCTAGTCTGTTGGAAGGGAGGAGAGTTCTCCACCAGGGTTCCCTTTGGAATATTGGGTCCGGTTCTTCGGTTAAGCTGTGGAGGGATAATTGGATCCCCAACTTCCCCAACTTCAATCTTAAAGACTATGTTCCACTTCACTCGGAGGATGCCACAGTGTCTTCTATCATCAATCGGAATCAGAATACTTGGGACCTCAGGAATCTCAGCCATCTTTCGGCCTTTGTCCAATCTGCTATTGGTGCCACGTCCTTTGGCTTGAACTCGGACTCTGATACTTTAATTTGGCCTGCTTTCTCTTCTGGATTGTATTCTGTTAAGTTAGGGTACAAGTTTCTTGTCAGTAAACTTGCTCCGTCCGCCACAGCTCACCCTCATCACTCTGCCGCAATTTCACAAGACACTTGGGATTGGATTTGGAAACTCCGGGTCGCTCCTAAAGTCAAACACTTTGTATGGAGGGCCATCTCCAACATTCTTGCCACTAATGGTAACAGGTTTGCTCAACACATTGCTATTTCCTCTACTTGTGTGATTTGTGGGGAATTTGATGAATCTGTGGAACATGCTCTTTTCTTGTGTCATTGGGTGACAGTGGCATGGTTTGTGCACCCTCTCAGTTACAAAGTAAACTTGCAAGGCTTCACCTCTCTTCAAGATTGGGTTTTATCAGTGATGAGAGATGGCTCTATTCTCCATTCCAACTCAGAAACTTTCTTTTCCCATGTTGCTTATCTCATGTGGGAAATCTGGAAACATAGGTGTCACGCCATCTTCAAGTTTTCCAAACCGGATCCTTTGGTTACCTCTTCCAAAGCTCTTGGAGCTTCTATTGAGTATTTGGGAATTCCTCCAAACTTGAGAAGCGCTGCTCATGCTGTGATCACTTCGAATTCTCTGTCGAATTTGAAATGGGGTCGCCCTGCTTTTGATAGCATTAAGATCAACACTGATGCTATGTGGGACTCAATCACTCTCTCTTCCGGTATAGCTGCAATTGCAAGGAATTCTTCAGGAATCATAGTAGGAGGCCTTGCTTCCCAAACTTTGGCTTCCTTTGCCATTGAAGCTGAGGCACAAGCTTTCATTCTTGGACTCTCACTAGCTACCTCCCTCTCCCTTTCTTCCTTTACTTTAGAATCAGATTCTCATGTTTTAATTTCTGCTTTATCAAACCCTCTGTCTTCGGTAGATTGGTCGGCTTCTAATCTTCTAAAAAAGATTAGATTTGGCGTTTGGTGTCCAATTGACTATTGTGATACCTTTCCGGAAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

542

Amino Acids

60.05

Weight (kDa)

8.94

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 247 - 317 2.6e-14 zinc-binding in reverse transcriptase
RVT_3 PF13456 432 - 525 1.1e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 590
AccB7I CCANNNNNTGG 1 cut(s) 1396
AccIII TCCGGA 1 cut(s) 1615
AciI CCGC 3 cut(s) 177, 708, 735
AclWI GGATC 4 cut(s) 436, 449, 1136, 1149
AcsI RAATTY 6 cut(s) 97, 893, 1194, 1240, 1252, 1354
AcuI CTGAAG 1 cut(s) 1344
AfaI GTAC 3 cut(s) 290, 304, 677
AfeI AGCGCT 1 cut(s) 1216
AfiI CCNNNNNNNGG 5 cut(s) 177, 339, 340, 565, 1396
AgsI TTSAA 7 cut(s) 52, 463, 610, 1004, 1126, 1258, 1415
AjiI CACGTC 1 cut(s) 597
AjnI CCWGG 2 cut(s) 233, 381
Alw21I GWGCWC 1 cut(s) 960
Alw26I GTCTC 2 cut(s) 164, 273
Alw44I GTGCAC 1 cut(s) 956
AlwI GGATC 4 cut(s) 436, 449, 1136, 1149
Aor13HI TCCGGA 1 cut(s) 1615
Aor51HI AGCGCT 1 cut(s) 1216
AoxI GGCC 5 cut(s) 231, 567, 635, 810, 1378
ApaLI GTGCAC 1 cut(s) 956
ApeKI GCWGC 3 cut(s) 62, 1217, 1340
ApoI RAATTY 6 cut(s) 97, 893, 1194, 1240, 1252, 1354
ArsI GACNNNNNNTTYG 4 cut(s) 1232, 1264, 1514, 1546
AspLEI GCGC 1 cut(s) 1217
AspS9I GGNCC 3 cut(s) 405, 541, 810
AsuC2I CCSGG 1 cut(s) 776
AsuHPI GGTGA 4 cut(s) 212, 710, 949, 985
AsuII TTCGAA 1 cut(s) 1238
AsuNHI GCTAGC 1 cut(s) 220
AvaII GGWCC 2 cut(s) 405, 541
AxyI CCTNAGG 1 cut(s) 545
BaeGI GKGCMC 1 cut(s) 960
BamHI GGATCC 2 cut(s) 441, 1141
BanI GGYRCC 1 cut(s) 590
BauI CACGAG 1 cut(s) 270
BbsI GAAGAC 2 cut(s) 501, 1524
Bbv12I GWGCWC 1 cut(s) 960
BbvCI CCTCAGC 1 cut(s) 1419
BbvI GCAGC 3 cut(s) 49, 1204, 1327
BccI CCATC 4 cut(s) 567, 821, 1025, 1127
BciT130I CCWGG 2 cut(s) 235, 383
BciVI GTATCC 1 cut(s) 66
BclI TGATCA 2 cut(s) 3, 1230
BcnI CCSGG 1 cut(s) 776
BcoDI GTCTC 2 cut(s) 164, 273
BfaI CTAG 3 cut(s) 221, 351, 1451
BfoI RGCGCY 1 cut(s) 1218
BfuI GTATCC 1 cut(s) 66
BisI GCNGC 4 cut(s) 63, 735, 1218, 1341
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 4 cut(s) 64, 736, 1219, 1342
BmcAI AGTACT 1 cut(s) 290
Bme1390I CCNGG 3 cut(s) 235, 383, 776
Bme18I GGWCC 2 cut(s) 405, 541
BmgBI CACGTC 1 cut(s) 597
BmgT120I GGNCC 3 cut(s) 405, 541, 810
BmiI GGNNCC 7 cut(s) 242, 388, 406, 443, 542, 592, 1143
BmrFI CCNGG 3 cut(s) 235, 383, 776
BmsI GCATC 2 cut(s) 487, 1291
BmtI GCTAGC 1 cut(s) 224
BpiI GAAGAC 2 cut(s) 501, 1524
BpmI CTGGAG 1 cut(s) 256
Bpu10I CCTNAGC 2 cut(s) 19, 1419
Bpu1102I GCTNAGC 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 1238
BpuEI CTTGAG 1 cut(s) 1228
BpuMI CCSGG 1 cut(s) 776
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 172, 382
BsaWI WCCGGW 4 cut(s) 407, 1138, 1331, 1615
Bsc4I CCNNNNNNNGG 5 cut(s) 177, 339, 340, 565, 1396
Bse21I CCTNAGG 1 cut(s) 545
Bse3DI GCAATG 1 cut(s) 858
BseAI TCCGGA 1 cut(s) 1615
BseBI CCWGG 2 cut(s) 235, 383
BseDI CCNNGG 2 cut(s) 172, 382
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 5 cut(s) 177, 339, 340, 565, 1396
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 5 cut(s) 559, 568, 979, 1068, 1410
BseRI GAGGAG 1 cut(s) 382
BseSI GKGCMC 1 cut(s) 960
BseXI GCAGC 3 cut(s) 49, 1204, 1327
BshFI GGCC 5 cut(s) 233, 569, 637, 812, 1380
BshNI GGYRCC 1 cut(s) 590
BsiHKAI GWGCWC 1 cut(s) 960
BsiSI CCGG 6 cut(s) 59, 408, 775, 1139, 1332, 1616
BslFI GGGAC 3 cut(s) 154, 554, 1325
BslI CCNNNNNNNGG 5 cut(s) 177, 339, 340, 565, 1396
BsmAI GTCTC 2 cut(s) 164, 273
BsmFI GGGAC 3 cut(s) 154, 554, 1325
BsnI GGCC 5 cut(s) 233, 569, 637, 812, 1380
Bso31I GGTCTC 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 1238
Bsp1286I GDGCHC 1 cut(s) 960
Bsp13I TCCGGA 1 cut(s) 1615
Bsp143I GATC 5 cut(s) 3, 441, 1141, 1230, 1290
Bsp1720I GCTNAGC 1 cut(s) 225
BspACI CCGC 3 cut(s) 177, 708, 735
BspANI GGCC 5 cut(s) 233, 569, 637, 812, 1380
BspCNI CTCAG 5 cut(s) 558, 567, 978, 1067, 1411
BspEI TCCGGA 1 cut(s) 1615
BspLI GGNNCC 7 cut(s) 242, 388, 406, 443, 542, 592, 1143
BspOI GCTAGC 1 cut(s) 224
BspPI GGATC 4 cut(s) 436, 449, 1136, 1149
BspT104I TTCGAA 1 cut(s) 1238
BspT107I GGYRCC 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 858
BssECI CCNNGG 2 cut(s) 172, 382
BssMI GATC 5 cut(s) 3, 441, 1141, 1230, 1290
BssSI CACGAG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 235, 383
Bst4CI ACNGT 2 cut(s) 505, 943
Bst6I CTCTTC 4 cut(s) 652, 1005, 1162, 1333
BstBI TTCGAA 1 cut(s) 1238
BstC8I GCNNGC 3 cut(s) 222, 231, 639
BstEII GGTNACC 1 cut(s) 1150
BstF5I GGATG 1 cut(s) 502
BstH2I RGCGCY 1 cut(s) 1218
BstHHI GCGC 1 cut(s) 1217
BstKTI GATC 5 cut(s) 6, 444, 1144, 1233, 1293
BstMAI GTCTC 2 cut(s) 164, 273
BstMBI GATC 5 cut(s) 3, 441, 1141, 1230, 1290
BstNI CCWGG 2 cut(s) 235, 383
BstNSI RCATGY 1 cut(s) 917
BstPI GGTNACC 1 cut(s) 1150
BstSCI CCNGG 3 cut(s) 233, 381, 774
BstSLI GKGCMC 1 cut(s) 960
BstV1I GCAGC 3 cut(s) 49, 1204, 1327
BstV2I GAAGAC 2 cut(s) 501, 1524
BstX2I RGATCY 2 cut(s) 441, 1141
BstYI RGATCY 2 cut(s) 441, 1141
Bsu36I CCTNAGG 1 cut(s) 545
BsuI GTATCC 1 cut(s) 66
BsuRI GGCC 5 cut(s) 233, 569, 637, 812, 1380
BtrI CACGTC 1 cut(s) 597
BtsCI GGATG 1 cut(s) 502
BtsIMutI CAGTG 4 cut(s) 510, 948, 1026, 1296
Cac8I GCNNGC 3 cut(s) 222, 231, 639
CfoI GCGC 1 cut(s) 1217
Cfr13I GGNCC 3 cut(s) 405, 541, 810
Csp6I GTAC 3 cut(s) 289, 303, 676
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 6 cut(s) 914, 948, 1073, 1087, 1223, 1499
CviQI GTAC 3 cut(s) 289, 303, 676
DpnI GATC 5 cut(s) 5, 443, 1143, 1232, 1292
DpnII GATC 5 cut(s) 3, 441, 1141, 1230, 1290
Eam1104I CTCTTC 4 cut(s) 652, 1005, 1162, 1333
EarI CTCTTC 4 cut(s) 652, 1005, 1162, 1333
EciI GGCGGA 1 cut(s) 697
Eco130I CCWWGG 1 cut(s) 172
Eco147I AGGCCT 2 cut(s) 233, 1380
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 2 cut(s) 405, 541
Eco47III AGCGCT 1 cut(s) 1216
Eco57I CTGAAG 1 cut(s) 1344
Eco81I CCTNAGG 1 cut(s) 545
Eco91I GGTNACC 1 cut(s) 1150
EcoO109I RGGNCCY 1 cut(s) 541
EcoO65I GGTNACC 1 cut(s) 1150
EcoRI GAATTC 3 cut(s) 1194, 1240, 1354
EcoRII CCWGG 2 cut(s) 233, 381
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 6 cut(s) 917, 951, 1076, 1090, 1226, 1502
FalI AAGNNNNNCTT 2 cut(s) 1342, 1374
FaqI GGGAC 3 cut(s) 154, 554, 1325
FatI CATG 6 cut(s) 913, 947, 1072, 1086, 1222, 1498
FauI CCCGC 1 cut(s) 170
FbaI TGATCA 2 cut(s) 3, 1230
Fnu4HI GCNGC 4 cut(s) 63, 735, 1218, 1341
FokI GGATG 1 cut(s) 509
Fsp4HI GCNGC 4 cut(s) 63, 735, 1218, 1341
FspBI CTAG 3 cut(s) 221, 351, 1451
GlaI GCGC 1 cut(s) 1216
GluI GCNGC 4 cut(s) 63, 735, 1218, 1341
GsuI CTGGAG 1 cut(s) 256
HaeII RGCGCY 1 cut(s) 1218
HaeIII GGCC 5 cut(s) 233, 569, 637, 812, 1380
HapII CCGG 6 cut(s) 59, 408, 775, 1139, 1332, 1616
HhaI GCGC 1 cut(s) 1217
Hin1II CATG 6 cut(s) 917, 951, 1076, 1090, 1226, 1502
Hin6I GCGC 1 cut(s) 1215
HinP1I GCGC 1 cut(s) 1215
HindIII AAGCTT 1 cut(s) 1428
HpaII CCGG 6 cut(s) 59, 408, 775, 1139, 1332, 1616
HphI GGTGA 4 cut(s) 212, 710, 949, 985
Hpy166II GTNNAC 3 cut(s) 695, 958, 979
Hpy188I TCNGA 9 cut(s) 118, 297, 493, 525, 531, 616, 622, 1057, 1492
Hpy188III TCNNGA 6 cut(s) 547, 651, 1004, 1099, 1362, 1616
Hpy8I GTNNAC 3 cut(s) 695, 958, 979
HpyAV CCTTC 3 cut(s) 43, 345, 356
HpyCH4III ACNGT 2 cut(s) 505, 943
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 5 cut(s) 95, 958, 985, 1343, 1349
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 6 cut(s) 917, 951, 1076, 1090, 1226, 1502
HspAI GCGC 1 cut(s) 1215
Kpn2I TCCGGA 1 cut(s) 1615
Ksp22I TGATCA 2 cut(s) 3, 1230
Kzo9I GATC 5 cut(s) 3, 441, 1141, 1230, 1290
LmnI GCTCC 4 cut(s) 246, 706, 787, 1172
Lsp1109I GCAGC 3 cut(s) 49, 1204, 1327
LweI GCATC 2 cut(s) 487, 1291
MaeI CTAG 3 cut(s) 221, 351, 1451
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 6 cut(s) 200, 839, 937, 968, 1112, 1150
MalI GATC 5 cut(s) 5, 443, 1143, 1232, 1292
MboI GATC 5 cut(s) 3, 441, 1141, 1230, 1290
MfeI CAATTG 2 cut(s) 1344, 1593
MflI RGATCY 2 cut(s) 441, 1141
MhlI GDGCHC 1 cut(s) 960
MlyI GAGTC 3 cut(s) 611, 1307, 1437
MmeI TCCRAC 4 cut(s) 53, 339, 843, 1074
MroI TCCGGA 1 cut(s) 1615
MseI TTAA 9 cut(s) 81, 207, 279, 420, 468, 629, 666, 1287, 1505
MspI CCGG 6 cut(s) 59, 408, 775, 1139, 1332, 1616
MspR9I CCNGG 3 cut(s) 235, 383, 776
MunI CAATTG 2 cut(s) 1344, 1593
MvaI CCWGG 2 cut(s) 235, 383
NciI CCSGG 1 cut(s) 776
NdeII GATC 5 cut(s) 3, 441, 1141, 1230, 1290
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 6 cut(s) 917, 951, 1076, 1090, 1226, 1502
NlaIV GGNNCC 7 cut(s) 242, 388, 406, 443, 542, 592, 1143
NmuCI GTSAC 3 cut(s) 200, 937, 1112
NspI RCATGY 1 cut(s) 917
NspV TTCGAA 1 cut(s) 1238
PceI AGGCCT 2 cut(s) 233, 1380
PfeI GAWTC 8 cut(s) 119, 257, 526, 550, 902, 1365, 1487, 1493
PflMI CCANNNNNTGG 1 cut(s) 1396
PkrI GCNGC 4 cut(s) 64, 736, 1219, 1342
PleI GAGTC 3 cut(s) 611, 1307, 1437
PpsI GAGTC 3 cut(s) 611, 1307, 1437
PpuMI RGGWCCY 1 cut(s) 541
Psp5II RGGWCCY 1 cut(s) 541
Psp6I CCWGG 2 cut(s) 233, 381
PspEI GGTNACC 1 cut(s) 1150
PspGI CCWGG 2 cut(s) 233, 381
PspN4I GGNNCC 7 cut(s) 242, 388, 406, 443, 542, 592, 1143
PspPI GGNCC 3 cut(s) 405, 541, 810
PspPPI RGGWCCY 1 cut(s) 541
PsuI RGATCY 2 cut(s) 441, 1141
RsaI GTAC 3 cut(s) 290, 304, 677
RsaNI GTAC 3 cut(s) 289, 303, 676
SaqAI TTAA 9 cut(s) 81, 207, 279, 420, 468, 629, 666, 1287, 1505
SatI GCNGC 4 cut(s) 63, 735, 1218, 1341
Sau3AI GATC 5 cut(s) 3, 441, 1141, 1230, 1290
Sau96I GGNCC 3 cut(s) 405, 541, 810
ScaI AGTACT 1 cut(s) 290
SchI GAGTC 3 cut(s) 611, 1307, 1437
ScrFI CCNGG 3 cut(s) 235, 383, 776
SduI GDGCHC 1 cut(s) 960
SfaNI GCATC 2 cut(s) 487, 1291
SfuI TTCGAA 1 cut(s) 1238
SinI GGWCC 2 cut(s) 405, 541
SmlI CTYRAG 1 cut(s) 1207
SmoI CTYRAG 1 cut(s) 1207
SseBI AGGCCT 2 cut(s) 233, 1380
SsiI CCGC 3 cut(s) 177, 708, 735
SspI AATATT 1 cut(s) 400
SspMI CTAG 3 cut(s) 221, 351, 1451
StuI AGGCCT 2 cut(s) 233, 1380
StyD4I CCNGG 3 cut(s) 233, 381, 774
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 2 cut(s) 505, 943
TaiI ACGT 1 cut(s) 599
TaqI TCGA 2 cut(s) 1238, 1250
TatI WGTACW 2 cut(s) 288, 302
TauI GCSGC 1 cut(s) 737
TfiI GAWTC 8 cut(s) 119, 257, 526, 550, 902, 1365, 1487, 1493
Tru1I TTAA 9 cut(s) 81, 207, 279, 420, 468, 629, 666, 1287, 1505
Tru9I TTAA 9 cut(s) 81, 207, 279, 420, 468, 629, 666, 1287, 1505
TscAI CASTG 4 cut(s) 510, 948, 1026, 1303
TseFI GTSAC 3 cut(s) 200, 937, 1112
TseI GCWGC 3 cut(s) 62, 1217, 1340
Tsp45I GTSAC 3 cut(s) 200, 937, 1112
TspDTI ATGAA 3 cut(s) 122, 915, 1423
TspGWI ACGGA 2 cut(s) 34, 693
TspRI CASTG 4 cut(s) 510, 948, 1026, 1303
Van91I CCANNNNNTGG 1 cut(s) 1396
VneI GTGCAC 1 cut(s) 956
VpaK11BI GGWCC 2 cut(s) 405, 541
XapI RAATTY 6 cut(s) 97, 893, 1194, 1240, 1252, 1354
XceI RCATGY 1 cut(s) 917
XcmI CCANNNNNNNNNTGG 2 cut(s) 261, 584
XspI CTAG 3 cut(s) 221, 351, 1451
ZrmI AGTACT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.