RchiOBHm_Chr1g0348821

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000194
Physical Location & Seq
Reverse (-)
41853715 .. 41854841
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57482

Sequence Viewer

Length: 342 bp
ATGGTTGCTCGATTCTGGTGGGGCAACAGAGGCGACTCTGGTATTCATTGGCTGAATTGGTCTAGGCTAGGCCTTCCTAAATCTAAAGGAGGCATGGGATTTCGTGATCTTCAAGACTTTAATCAAGCTCTCCTAGCCAAGCAAGGATGGCGTATTCTTACTAATCCTACAGCTCTATGGGTTCGTGTTCTTAAGGCACGGTATTTTCCTATGGATACTTTCTTCACTGCTAGAAAAGGATCCTCTCCTTCTTGGCTTTGGTCCAGTATGCTTCATGGAAGAGATCTTCTTAAGCCTAATGTGGTGTGGCAGATAGGAAATGGCATTAATATTCCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

113

Amino Acids

13.03

Weight (kDa)

11.51

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 234, 247
AflII CTTAAG 2 cut(s) 191, 290
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 2 cut(s) 128, 173
AluI AGCT 2 cut(s) 128, 173
AlwI GGATC 2 cut(s) 234, 247
AoxI GGCC 1 cut(s) 70
AseI ATTAAT 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 261
AvaII GGWCC 1 cut(s) 261
BamHI GGATCC 1 cut(s) 239
BccI CCATC 1 cut(s) 141
BciVI GTATCC 1 cut(s) 208
BfaI CTAG 4 cut(s) 63, 68, 134, 231
BfmI CTRYAG 1 cut(s) 168
BfrI CTTAAG 2 cut(s) 191, 290
BfuI GTATCC 1 cut(s) 208
BglII AGATCT 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 264, 335
BseGI GGATG 1 cut(s) 152
BseNI ACTGG 2 cut(s) 264, 335
BshFI GGCC 1 cut(s) 72
BsnI GGCC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 106, 239, 283
BspANI GGCC 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 2 cut(s) 234, 247
BspTI CTTAAG 2 cut(s) 191, 290
BsrI ACTGG 2 cut(s) 264, 335
BssMI GATC 3 cut(s) 106, 239, 283
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 274
BstAFI CTTAAG 2 cut(s) 191, 290
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 3 cut(s) 109, 242, 286
BstMBI GATC 3 cut(s) 106, 239, 283
BstMWI GCNNNNNNNGC 3 cut(s) 30, 134, 148
BstSFI CTRYAG 1 cut(s) 168
BstX2I RGATCY 2 cut(s) 239, 283
BstYI RGATCY 2 cut(s) 239, 283
BsuI GTATCC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 261
CviAII CATG 2 cut(s) 94, 275
CviJI RGCY 8 cut(s) 52, 67, 72, 128, 137, 173, 256, 295
CviKI_1 RGCY 8 cut(s) 52, 67, 72, 128, 137, 173, 256, 295
DpnI GATC 3 cut(s) 108, 241, 285
DpnII GATC 3 cut(s) 106, 239, 283
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
Eco147I AGGCCT 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 261
FaeI CATG 2 cut(s) 97, 278
FaiI YATR 5 cut(s) 95, 178, 212, 269, 276
FatI CATG 2 cut(s) 93, 274
FokI GGATG 1 cut(s) 159
FspBI CTAG 4 cut(s) 63, 68, 134, 231
HaeIII GGCC 1 cut(s) 72
Hin1II CATG 2 cut(s) 97, 278
HinfI GANTC 2 cut(s) 12, 35
Hpy188III TCNNGA 2 cut(s) 104, 113
HpyAV CCTTC 2 cut(s) 83, 258
HpyCH4III ACNGT 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 134, 148
Hsp92II CATG 2 cut(s) 97, 278
Kzo9I GATC 3 cut(s) 106, 239, 283
LpnPI CCDG 2 cut(s) 24, 277
MaeI CTAG 4 cut(s) 63, 68, 134, 231
MalI GATC 3 cut(s) 108, 241, 285
MboI GATC 3 cut(s) 106, 239, 283
MboII GAAGA 4 cut(s) 101, 214, 278, 291
MflI RGATCY 2 cut(s) 239, 283
MluCI AATT 1 cut(s) 55
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 3 cut(s) 23, 83, 253
MseI TTAA 4 cut(s) 120, 192, 291, 327
MspCI CTTAAG 2 cut(s) 191, 290
MwoI GCNNNNNNNGC 3 cut(s) 30, 134, 148
NdeII GATC 3 cut(s) 106, 239, 283
NlaIII CATG 2 cut(s) 97, 278
NlaIV GGNNCC 1 cut(s) 241
PceI AGGCCT 1 cut(s) 72
PfeI GAWTC 1 cut(s) 12
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 261
PsuI RGATCY 2 cut(s) 239, 283
SaqAI TTAA 4 cut(s) 120, 192, 291, 327
Sau3AI GATC 3 cut(s) 106, 239, 283
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 29
SetI ASST 2 cut(s) 130, 175
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 191, 290
SmoI CTYRAG 2 cut(s) 191, 290
Sse9I AATT 1 cut(s) 55
SseBI AGGCCT 1 cut(s) 72
SspI AATATT 1 cut(s) 331
SspMI CTAG 4 cut(s) 63, 68, 134, 231
StuI AGGCCT 1 cut(s) 72
TaaI ACNGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 55
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 4 cut(s) 120, 192, 291, 327
Tru9I TTAA 4 cut(s) 120, 192, 291, 327
TscAI CASTG 1 cut(s) 232
TspDTI ATGAA 2 cut(s) 35, 263
TspRI CASTG 1 cut(s) 232
Vha464I CTTAAG 2 cut(s) 191, 290
VpaK11BI GGWCC 1 cut(s) 261
VspI ATTAAT 1 cut(s) 327
XspI CTAG 4 cut(s) 63, 68, 134, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.