ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1158 |
| Acc36I | ACCTGC | 2 cut(s) | 871, 885 |
| Acc65I | GGTACC | 1 cut(s) | 858 |
| AccB1I | GGYRCC | 1 cut(s) | 858 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 717 |
| AccI | GTMKAC | 1 cut(s) | 589 |
| AccII | CGCG | 1 cut(s) | 120 |
| AciI | CCGC | 6 cut(s) | 118, 120, 135, 504, 850, 965 |
| AclWI | GGATC | 2 cut(s) | 323, 665 |
| AcsI | RAATTY | 5 cut(s) | 258, 433, 576, 690, 839 |
| AcuI | CTGAAG | 1 cut(s) | 542 |
| AfaI | GTAC | 1 cut(s) | 860 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 119, 522, 717, 918, 936 |
| AgsI | TTSAA | 7 cut(s) | 109, 385, 457, 658, 737, 744, 1097 |
| AjnI | CCWGG | 4 cut(s) | 51, 94, 199, 515 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1089, 1121 |
| Alw21I | GWGCWC | 1 cut(s) | 568 |
| Alw26I | GTCTC | 1 cut(s) | 881 |
| AlwI | GGATC | 2 cut(s) | 323, 665 |
| AoxI | GGCC | 3 cut(s) | 136, 390, 443 |
| ApeKI | GCWGC | 1 cut(s) | 1012 |
| ApoI | RAATTY | 5 cut(s) | 258, 433, 576, 690, 839 |
| AseI | ATTAAT | 2 cut(s) | 84, 419 |
| Asp718I | GGTACC | 1 cut(s) | 858 |
| AspS9I | GGNCC | 3 cut(s) | 137, 852, 961 |
| AsuC2I | CCSGG | 1 cut(s) | 856 |
| AsuHPI | GGTGA | 2 cut(s) | 46, 138 |
| AvaII | GGWCC | 2 cut(s) | 852, 961 |
| BanI | GGYRCC | 1 cut(s) | 858 |
| BanII | GRGCYC | 1 cut(s) | 568 |
| BbsI | GAAGAC | 1 cut(s) | 1139 |
| Bbv12I | GWGCWC | 1 cut(s) | 568 |
| BbvCI | CCTCAGC | 1 cut(s) | 957 |
| BbvI | GCAGC | 1 cut(s) | 999 |
| BccI | CCATC | 3 cut(s) | 168, 629, 1018 |
| BceAI | ACGGC | 2 cut(s) | 850, 1035 |
| BciT130I | CCWGG | 4 cut(s) | 53, 96, 201, 517 |
| BclI | TGATCA | 1 cut(s) | 216 |
| BcnI | CCSGG | 1 cut(s) | 856 |
| BcoDI | GTCTC | 1 cut(s) | 881 |
| BfmI | CTRYAG | 1 cut(s) | 878 |
| BfuAI | ACCTGC | 2 cut(s) | 871, 885 |
| BisI | GCNGC | 2 cut(s) | 136, 1013 |
| BlsI | GCNGC | 2 cut(s) | 137, 1014 |
| Bme1390I | CCNGG | 5 cut(s) | 53, 96, 201, 517, 856 |
| Bme18I | GGWCC | 2 cut(s) | 852, 961 |
| BmgT120I | GGNCC | 3 cut(s) | 137, 852, 961 |
| BmiI | GGNNCC | 3 cut(s) | 139, 860, 963 |
| BmrFI | CCNGG | 5 cut(s) | 53, 96, 201, 517, 856 |
| BmsI | GCATC | 1 cut(s) | 876 |
| BpiI | GAAGAC | 1 cut(s) | 1139 |
| Bpu10I | CCTNAGC | 2 cut(s) | 231, 957 |
| BpuEI | CTTGAG | 1 cut(s) | 557 |
| BpuMI | CCSGG | 1 cut(s) | 856 |
| BsaI | GGTCTC | 1 cut(s) | 881 |
| BsaJI | CCNNGG | 4 cut(s) | 118, 516, 930, 1118 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1089, 1119 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 119, 522, 717, 918, 936 |
| Bse3DI | GCAATG | 1 cut(s) | 862 |
| BseBI | CCWGG | 4 cut(s) | 53, 96, 201, 517 |
| BseDI | CCNNGG | 4 cut(s) | 118, 516, 930, 1118 |
| BseGI | GGATG | 2 cut(s) | 179, 301 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 119, 522, 717, 918, 936 |
| BseMI | GCAATG | 1 cut(s) | 862 |
| BseMII | CTCAG | 4 cut(s) | 15, 245, 678, 948 |
| BseRI | GAGGAG | 1 cut(s) | 770 |
| BseXI | GCAGC | 1 cut(s) | 999 |
| Bsh1236I | CGCG | 1 cut(s) | 120 |
| Bsh1285I | CGRYCG | 1 cut(s) | 508 |
| BshFI | GGCC | 3 cut(s) | 138, 392, 445 |
| BshNI | GGYRCC | 1 cut(s) | 858 |
| BsiEI | CGRYCG | 1 cut(s) | 508 |
| BsiHKAI | GWGCWC | 1 cut(s) | 568 |
| BsiSI | CCGG | 1 cut(s) | 855 |
| BslFI | GGGAC | 1 cut(s) | 947 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 119, 522, 717, 918, 936 |
| BsmAI | GTCTC | 1 cut(s) | 881 |
| BsmFI | GGGAC | 1 cut(s) | 947 |
| BsnI | GGCC | 3 cut(s) | 138, 392, 445 |
| Bso31I | GGTCTC | 1 cut(s) | 881 |
| Bsp1286I | GDGCHC | 1 cut(s) | 568 |
| Bsp143I | GATC | 4 cut(s) | 216, 315, 549, 670 |
| BspACI | CCGC | 6 cut(s) | 118, 120, 135, 504, 850, 965 |
| BspANI | GGCC | 3 cut(s) | 138, 392, 445 |
| BspCNI | CTCAG | 4 cut(s) | 16, 244, 677, 949 |
| BspFNI | CGCG | 1 cut(s) | 120 |
| BspHI | TCATGA | 3 cut(s) | 45, 423, 1081 |
| BspLI | GGNNCC | 3 cut(s) | 139, 860, 963 |
| BspMAI | CTGCAG | 1 cut(s) | 882 |
| BspMI | ACCTGC | 2 cut(s) | 871, 885 |
| BspPI | GGATC | 2 cut(s) | 323, 665 |
| BspT107I | GGYRCC | 1 cut(s) | 858 |
| BspTNI | GGTCTC | 1 cut(s) | 881 |
| BsrDI | GCAATG | 1 cut(s) | 862 |
| BssECI | CCNNGG | 4 cut(s) | 118, 516, 930, 1118 |
| BssMI | GATC | 4 cut(s) | 216, 315, 549, 670 |
| BssT1I | CCWWGG | 1 cut(s) | 930 |
| Bst2UI | CCWGG | 4 cut(s) | 53, 96, 201, 517 |
| Bst4CI | ACNGT | 1 cut(s) | 614 |
| BstC8I | GCNNGC | 4 cut(s) | 399, 529, 533, 765 |
| BstDEI | CTNAG | 4 cut(s) | 24, 231, 664, 957 |
| BstDSI | CCRYGG | 2 cut(s) | 118, 1118 |
| BstF5I | GGATG | 2 cut(s) | 179, 301 |
| BstFNI | CGCG | 1 cut(s) | 120 |
| BstKTI | GATC | 4 cut(s) | 219, 318, 552, 673 |
| BstMAI | GTCTC | 1 cut(s) | 881 |
| BstMBI | GATC | 4 cut(s) | 216, 315, 549, 670 |
| BstMCI | CGRYCG | 1 cut(s) | 508 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 398, 518, 902 |
| BstNI | CCWGG | 4 cut(s) | 53, 96, 201, 517 |
| BstSCI | CCNGG | 5 cut(s) | 51, 94, 199, 515, 854 |
| BstSFI | CTRYAG | 1 cut(s) | 878 |
| BstUI | CGCG | 1 cut(s) | 120 |
| BstV1I | GCAGC | 1 cut(s) | 999 |
| BstV2I | GAAGAC | 1 cut(s) | 1139 |
| BsuRI | GGCC | 3 cut(s) | 138, 392, 445 |
| BtgI | CCRYGG | 2 cut(s) | 118, 1118 |
| BtgZI | GCGATG | 1 cut(s) | 1037 |
| BtsCI | GGATG | 2 cut(s) | 179, 301 |
| BtsIMutI | CAGTG | 1 cut(s) | 852 |
| BveI | ACCTGC | 2 cut(s) | 871, 885 |
| Cac8I | GCNNGC | 4 cut(s) | 399, 529, 533, 765 |
| CciI | TCATGA | 3 cut(s) | 45, 423, 1081 |
| Cfr13I | GGNCC | 3 cut(s) | 137, 852, 961 |
| Cfr42I | CCGCGG | 1 cut(s) | 121 |
| CpoI | CGGWCCG | 1 cut(s) | 852 |
| Csp6I | GTAC | 1 cut(s) | 859 |
| CspI | CGGWCCG | 1 cut(s) | 852 |
| CviAII | CATG | 8 cut(s) | 46, 253, 358, 424, 821, 918, 1004, 1082 |
| CviQI | GTAC | 1 cut(s) | 859 |
| DdeI | CTNAG | 4 cut(s) | 24, 231, 664, 957 |
| DpnI | GATC | 4 cut(s) | 218, 317, 551, 672 |
| DpnII | GATC | 4 cut(s) | 216, 315, 549, 670 |
| DraI | TTTAAA | 1 cut(s) | 367 |
| Ecl136II | GAGCTC | 1 cut(s) | 566 |
| Eco130I | CCWWGG | 1 cut(s) | 930 |
| Eco24I | GRGCYC | 1 cut(s) | 568 |
| Eco31I | GGTCTC | 1 cut(s) | 881 |
| Eco47I | GGWCC | 2 cut(s) | 852, 961 |
| Eco53kI | GAGCTC | 1 cut(s) | 566 |
| Eco57I | CTGAAG | 1 cut(s) | 542 |
| EcoICRI | GAGCTC | 1 cut(s) | 566 |
| EcoO109I | RGGNCCY | 1 cut(s) | 961 |
| EcoRII | CCWGG | 4 cut(s) | 51, 94, 199, 515 |
| EcoT14I | CCWWGG | 1 cut(s) | 930 |
| EcoT38I | GRGCYC | 1 cut(s) | 568 |
| ErhI | CCWWGG | 1 cut(s) | 930 |
| FaeI | CATG | 8 cut(s) | 49, 256, 361, 427, 824, 921, 1007, 1085 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 34, 585, 617 |
| FaqI | GGGAC | 1 cut(s) | 947 |
| FatI | CATG | 8 cut(s) | 45, 252, 357, 423, 820, 917, 1003, 1081 |
| FauI | CCCGC | 3 cut(s) | 113, 125, 972 |
| FbaI | TGATCA | 1 cut(s) | 216 |
| FblI | GTMKAC | 1 cut(s) | 589 |
| Fnu4HI | GCNGC | 2 cut(s) | 136, 1013 |
| FokI | GGATG | 2 cut(s) | 186, 308 |
| FriOI | GRGCYC | 1 cut(s) | 568 |
| Fsp4HI | GCNGC | 2 cut(s) | 136, 1013 |
| GluI | GCNGC | 2 cut(s) | 136, 1013 |
| HaeIII | GGCC | 3 cut(s) | 138, 392, 445 |
| HapII | CCGG | 1 cut(s) | 855 |
| Hin1II | CATG | 8 cut(s) | 49, 256, 361, 427, 824, 921, 1007, 1085 |
| HindIII | AAGCTT | 4 cut(s) | 529, 599, 738, 761 |
| HinfI | GANTC | 5 cut(s) | 346, 619, 707, 1000, 1088 |
| HpaII | CCGG | 1 cut(s) | 855 |
| HphI | GGTGA | 2 cut(s) | 46, 138 |
| Hpy166II | GTNNAC | 2 cut(s) | 590, 641 |
| Hpy188I | TCNGA | 2 cut(s) | 216, 475 |
| Hpy188III | TCNNGA | 4 cut(s) | 46, 424, 632, 1082 |
| Hpy8I | GTNNAC | 2 cut(s) | 590, 641 |
| HpyAV | CCTTC | 3 cut(s) | 451, 638, 789 |
| HpyCH4III | ACNGT | 1 cut(s) | 614 |
| HpyCH4V | TGCA | 3 cut(s) | 310, 867, 880 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 398, 518, 902 |
| HpyF3I | CTNAG | 4 cut(s) | 24, 231, 664, 957 |
| Hsp92II | CATG | 8 cut(s) | 49, 256, 361, 427, 824, 921, 1007, 1085 |
| KpnI | GGTACC | 1 cut(s) | 862 |
| Ksp22I | TGATCA | 1 cut(s) | 216 |
| KspI | CCGCGG | 1 cut(s) | 121 |
| Kzo9I | GATC | 4 cut(s) | 216, 315, 549, 670 |
| LmnI | GCTCC | 2 cut(s) | 563, 1110 |
| Lsp1109I | GCAGC | 1 cut(s) | 999 |
| LweI | GCATC | 1 cut(s) | 876 |
| MaeIII | GTNAC | 2 cut(s) | 872, 997 |
| MalI | GATC | 4 cut(s) | 218, 317, 551, 672 |
| MboI | GATC | 4 cut(s) | 216, 315, 549, 670 |
| MboII | GAAGA | 4 cut(s) | 548, 555, 1097, 1139 |
| MhlI | GDGCHC | 1 cut(s) | 568 |
| MlyI | GAGTC | 1 cut(s) | 994 |
| MmeI | TCCRAC | 3 cut(s) | 266, 392, 596 |
| MseI | TTAA | 9 cut(s) | 57, 84, 264, 366, 375, 419, 695, 725, 1152 |
| MslI | CAYNNNNRTG | 1 cut(s) | 683 |
| MspA1I | CMGCKG | 1 cut(s) | 120 |
| MspI | CCGG | 1 cut(s) | 855 |
| MspR9I | CCNGG | 5 cut(s) | 53, 96, 201, 517, 856 |
| MvaI | CCWGG | 4 cut(s) | 53, 96, 201, 517 |
| MvnI | CGCG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 398, 518, 902 |
| NciI | CCSGG | 1 cut(s) | 856 |
| NdeII | GATC | 4 cut(s) | 216, 315, 549, 670 |
| NlaIII | CATG | 8 cut(s) | 49, 256, 361, 427, 824, 921, 1007, 1085 |
| NlaIV | GGNNCC | 3 cut(s) | 139, 860, 963 |
| NmuCI | GTSAC | 2 cut(s) | 872, 997 |
| PagI | TCATGA | 3 cut(s) | 45, 423, 1081 |
| PfeI | GAWTC | 4 cut(s) | 346, 619, 707, 1088 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 717 |
| PkrI | GCNGC | 2 cut(s) | 137, 1014 |
| PleI | GAGTC | 1 cut(s) | 994 |
| PpsI | GAGTC | 1 cut(s) | 994 |
| PpuMI | RGGWCCY | 1 cut(s) | 961 |
| PshBI | ATTAAT | 2 cut(s) | 84, 419 |
| PsiI | TTATAA | 1 cut(s) | 1158 |
| Psp124BI | GAGCTC | 1 cut(s) | 568 |
| Psp5II | RGGWCCY | 1 cut(s) | 961 |
| Psp6I | CCWGG | 4 cut(s) | 51, 94, 199, 515 |
| PspGI | CCWGG | 4 cut(s) | 51, 94, 199, 515 |
| PspN4I | GGNNCC | 3 cut(s) | 139, 860, 963 |
| PspPI | GGNCC | 3 cut(s) | 137, 852, 961 |
| PspPPI | RGGWCCY | 1 cut(s) | 961 |
| PstI | CTGCAG | 1 cut(s) | 882 |
| RsaI | GTAC | 1 cut(s) | 860 |
| RsaNI | GTAC | 1 cut(s) | 859 |
| RseI | CAYNNNNRTG | 1 cut(s) | 683 |
| Rsr2I | CGGWCCG | 1 cut(s) | 852 |
| RsrII | CGGWCCG | 1 cut(s) | 852 |
| SacI | GAGCTC | 1 cut(s) | 568 |
| SacII | CCGCGG | 1 cut(s) | 121 |
| SaqAI | TTAA | 9 cut(s) | 57, 84, 264, 366, 375, 419, 695, 725, 1152 |
| SatI | GCNGC | 2 cut(s) | 136, 1013 |
| Sau3AI | GATC | 4 cut(s) | 216, 315, 549, 670 |
| Sau96I | GGNCC | 3 cut(s) | 137, 852, 961 |
| SbfI | CCTGCAGG | 1 cut(s) | 882 |
| SchI | GAGTC | 1 cut(s) | 994 |
| ScrFI | CCNGG | 5 cut(s) | 53, 96, 201, 517, 856 |
| SdaI | CCTGCAGG | 1 cut(s) | 882 |
| SduI | GDGCHC | 1 cut(s) | 568 |
| SfaNI | GCATC | 1 cut(s) | 876 |
| SfcI | CTRYAG | 1 cut(s) | 878 |
| Sfr303I | CCGCGG | 1 cut(s) | 121 |
| SgrBI | CCGCGG | 1 cut(s) | 121 |
| SinI | GGWCC | 2 cut(s) | 852, 961 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 683 |
| SmlI | CTYRAG | 1 cut(s) | 536 |
| SmoI | CTYRAG | 1 cut(s) | 536 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 882 |
| SsiI | CCGC | 6 cut(s) | 118, 120, 135, 504, 850, 965 |
| SspI | AATATT | 1 cut(s) | 946 |
| SstI | GAGCTC | 1 cut(s) | 568 |
| StyD4I | CCNGG | 5 cut(s) | 51, 94, 199, 515, 854 |
| StyI | CCWWGG | 1 cut(s) | 930 |
| TaaI | ACNGT | 1 cut(s) | 614 |
| TaqI | TCGA | 3 cut(s) | 771, 1051, 1125 |
| TauI | GCSGC | 1 cut(s) | 138 |
| TfiI | GAWTC | 4 cut(s) | 346, 619, 707, 1088 |
| Tru1I | TTAA | 9 cut(s) | 57, 84, 264, 366, 375, 419, 695, 725, 1152 |
| Tru9I | TTAA | 9 cut(s) | 57, 84, 264, 366, 375, 419, 695, 725, 1152 |
| TscAI | CASTG | 1 cut(s) | 852 |
| TseFI | GTSAC | 2 cut(s) | 872, 997 |
| TseI | GCWGC | 1 cut(s) | 1012 |
| Tsp45I | GTSAC | 2 cut(s) | 872, 997 |
| TspDTI | ATGAA | 3 cut(s) | 440, 989, 1098 |
| TspRI | CASTG | 1 cut(s) | 852 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 717 |
| VpaK11BI | GGWCC | 2 cut(s) | 852, 961 |
| VspI | ATTAAT | 2 cut(s) | 84, 419 |
| XapI | RAATTY | 5 cut(s) | 258, 433, 576, 690, 839 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 438 |
| XmiI | GTMKAC | 1 cut(s) | 589 |