Rh4DG294000

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000194
Physical Location & Seq
Forward (+)
51545299 .. 51545697
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG294000.1

Sequence Viewer

Length: 399 bp
ATGCTATTCACACTCTCAAAGTCTCGAGAGAACAGGTGGATGTTTTCCTCACATTTTTATGGACAATTTGGAGTGAATGAAATGCGGTGGTGTGGAAAGGGAGGGGCAGTCTGCAACCCAGTGCAGATGGCGGCCACTGCTATTCGTTTTCTGGAAGAATATCAAGGTTTCCATCCGGATAAAAGGATGGTCCGACGAAGAAGAATAACAAAGTGGTGTTGCGCACCTAGAGGACGTCTCAAGGTCAACATTGACGGAGCATTTCAGGTAAGAAACAATTGTGGGGGTGTCGGAGTTGTAGTTAGGGATGATCAGGTTGTGGCTGCGCTGGGATGGCAGATTCAGTATGCATCTTTGGCATTAAAGGTGGAAGCGCTGTCCCTTCGAGTCGCCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

132

Amino Acids

14.99

Weight (kDa)

9.99

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 238
Acc16I TGCGCA 1 cut(s) 223
AccIII TCCGGA 1 cut(s) 175
AciI CCGC 2 cut(s) 85, 131
AcoI YGGCCR 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 235
AfeI AGCGCT 1 cut(s) 375
Alw26I GTCTC 2 cut(s) 27, 242
Ama87I CYCGRG 1 cut(s) 24
Aor13HI TCCGGA 1 cut(s) 175
Aor51HI AGCGCT 1 cut(s) 375
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 323
AspLEI GCGC 3 cut(s) 224, 328, 376
AspS9I GGNCC 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 24
AvaII GGWCC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 310
BccI CCATC 4 cut(s) 121, 180, 181, 327
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 27, 242
BfaI CTAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 377
BisI GCNGC 2 cut(s) 132, 324
BlsI GCNGC 2 cut(s) 133, 325
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 190
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 359
BmuI ACTGGG 1 cut(s) 113
BplI GAGNNNNNCTC 2 cut(s) 222, 254
BpuEI CTTGAG 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 285, 315
Bse1I ACTGG 1 cut(s) 119
BseAI TCCGGA 1 cut(s) 175
BseGI GGATG 5 cut(s) 45, 172, 192, 313, 338
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 310
BseYI CCCAGC 1 cut(s) 328
BsgI GTGCAG 1 cut(s) 143
BshFI GGCC 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 27, 242
BsmBI CGTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 2 cut(s) 85, 131
BspANI GGCC 1 cut(s) 134
BspEI TCCGGA 1 cut(s) 175
BsrI ACTGG 1 cut(s) 119
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 235
BstACI GRCGYC 1 cut(s) 235
BstF5I GGATG 5 cut(s) 45, 172, 192, 313, 338
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 3 cut(s) 224, 328, 376
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 27, 242
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 3 cut(s) 137, 334, 356
BstV1I GCAGC 1 cut(s) 310
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 5 cut(s) 45, 172, 192, 313, 338
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 126, 135
CfoI GCGC 3 cut(s) 224, 328, 376
Cfr13I GGNCC 1 cut(s) 190
CviJI RGCY 2 cut(s) 134, 323
CviKI_1 RGCY 2 cut(s) 134, 323
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 190
Eco47III AGCGCT 1 cut(s) 375
Eco88I CYCGRG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 352
Esp3I CGTCTC 1 cut(s) 242
FaiI YATR 2 cut(s) 60, 348
FaqI GGGAC 1 cut(s) 364
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 132, 324
FokI GGATG 5 cut(s) 52, 159, 199, 320, 345
Fsp4HI GCNGC 2 cut(s) 132, 324
FspBI CTAG 1 cut(s) 228
FspI TGCGCA 1 cut(s) 223
GlaI GCGC 3 cut(s) 223, 327, 375
GluI GCNGC 2 cut(s) 132, 324
GsaI CCCAGC 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 176
HhaI GCGC 3 cut(s) 224, 328, 376
Hin1I GRCGYC 1 cut(s) 235
Hin6I GCGC 3 cut(s) 222, 326, 374
HinP1I GCGC 3 cut(s) 222, 326, 374
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 2 cut(s) 340, 387
HpaII CCGG 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 194, 293
Hpy188III TCNNGA 4 cut(s) 24, 26, 152, 176
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 392
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 114, 124, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 334, 356
HpySE526I ACGT 1 cut(s) 235
Hsp92I GRCGYC 1 cut(s) 235
HspAI GCGC 3 cut(s) 222, 326, 374
Kpn2I TCCGGA 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 7 cut(s) 19, 132, 137, 189, 251, 299, 314
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 359
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 235
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 3 cut(s) 167, 210, 213
MfeI CAATTG 1 cut(s) 277
MluCI AATT 2 cut(s) 65, 277
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 2 cut(s) 217, 271
MnlI CCTC 3 cut(s) 58, 95, 224
Mph1103I ATGCAT 1 cut(s) 352
MroI TCCGGA 1 cut(s) 175
MseI TTAA 1 cut(s) 362
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 277
MwoI GCNNNNNNNGC 3 cut(s) 137, 334, 356
NdeII GATC 1 cut(s) 310
NsbI TGCGCA 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 24
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 2 cut(s) 133, 325
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 2 cut(s) 132, 324
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 396
SetI ASST 8 cut(s) 38, 169, 229, 238, 246, 270, 318, 369
SfaNI GCATC 1 cut(s) 359
Sfr274I CTCGAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 24, 239
SmoI CTYRAG 2 cut(s) 24, 239
Sse9I AATT 2 cut(s) 65, 277
SsiI CCGC 2 cut(s) 85, 131
SspMI CTAG 1 cut(s) 228
TaiI ACGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 25, 385
TasI AATT 2 cut(s) 65, 277
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 2 cut(s) 126, 142
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 2 cut(s) 126, 142
VpaK11BI GGWCC 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 24
XspI CTAG 1 cut(s) 228
ZraI GACGTC 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.