Rorug05G0342600

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000194
Physical Location & Seq
Forward (+)
41922169 .. 41924642
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0342600.1

Sequence Viewer

Length: 1671 bp
ATGCCGGGTTGTCTAAGCAAGAGTTTACACTCTTCTTCTCATTTCATGAAGAACATGGAGCAAGAAGCCAAAGTCACTGAGAAGCAGGGGATCGTCACCATTCTCGGCTCCGACTGCGAAAGAAACAAAGCAGCTTCTCTGCGACGAACACTGTCGGCCGACATGTCGTCCAAGAAATGGCTTGCTCAACAAGGTTTCTTCTCTCCCATGAAAAAGATTGCATCATCTAAAGAGCTCTCCATGTCCATAGCGGACAGCAACTCATCTTCCTCCTCCGATGAGGACGAGGATCATTTCCGAAACAGGAAGGCTCAGCAACAGAAGATGTTCCATATATGGACCCCCATCGATCAAGATGATCAGATTAAGAAGAAGGAGGAGGAGATGGCCGAGGGAAAATTTGATATCTGGAGCTCACTGGTGAATCAAAAGGATGGAGTAGAAAACGAAGCAAACAAGATTCCAGAAGCACCTTATGTTCATCCTCTTGTGAAGAAACAATCGAGCTCTTTGAAAGGAAAGAGTCTTGAAGTGTGCACTGAAAGCCTCGGATCCGAGACTGGTTCTGAAGGCTTTGGATCATACCCTTCTTCAGAAACCGGAGACATAGACGTGGTTATTAAAGAGGAAGAACAAGTGGCAGAGATTGAACAACCGCAGCAACAACAAGAAGATCAAGAGAAACAAGTGAATACACAAGCAGTTTCGCATGTGGAAGAGTTCCCAGTTGTCAAGTACAACTCTGCTGCTGCTAAGAAATCGGCTGCGGTGGTGGTTCGATCATTTCCTCCTCCTATTCCATCTTTATCGGGTTCTGATGGAGCGTCTCTTCGCATTAAGACTCACCGGGACAACGGGCGAGTAGTCCTTGAAGCCGTGTCGATGCCTTCTCCCAATAACTTCCGTGCTCAACGCCAAGACGGCCGCCTTGTCCTTACTTTTGTGAGTGCTACTCCGAGCTCTTTTGAGGAGTACTCAGAGAATGAAGAAGTGGTTGCTGAAGAGCAGAAAGAGGAATTAGAGTACGAGGAGAAATTTGTCAACTTTGCGGAAAGCGAGACTGAGGACGAGGATGACGAGGAAGATGAGGATAGAGAGAAAGAGGAGGAAGTTGAGGTTGAGAGAGTAGTAGGAAAAGAAAGTGGAATCAAGGAAATAGAAATTGGGATGGAGGAAGCACCAAAAATGTTGACAAGTAGGGTGACAACTGTTCATAGGCTAGCACTAATGATGAAAAAGCCAATTGGATTGGCTAATAGGAGTCAAGGGTGGGCTGCTAACAAGTTTAATCAAGTAGTTAAGTATGGAGGGGATGAGGAGGAGGAAACAATGAAGCCAACCCCACTAGCACAATCACTTCCACCACGGCCCGGCCGCGTGGCTCGGTTGATACCTAAGTCACAGGCCGCAGCGACAGCAACACCCGCCGCCGCAGCTTCTTTGAATGCTTACGAGTACTATTGGCGCACCAAGCCCACAGCAGCACTCAACCCACTTTCCCAAGCAGCTTCCCCGCCCATGAAGAGCAAGGACCAAATGGCAAATCAGCAGCAACAATTGCTGGTTTTGAGAGGCAACAAAGGGGATCACATGGTTCCTTTGTCAAAGGGTTGCAAAGAGCCTAGAAGGTCTCTTCTATTCTGGGAGCCATACTGCATTGCCACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

556

Amino Acids

61.91

Weight (kDa)

5.14

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 261 - 314 7e-19 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 177
AccII CGCG 1 cut(s) 1377
AclWI GGATC 6 cut(s) 98, 297, 546, 559, 586, 1593
AcoI YGGCCR 4 cut(s) 156, 387, 922, 1372
AcsI RAATTY 2 cut(s) 398, 1034
AcuI CTGAAG 3 cut(s) 576, 588, 1020
AfaI GTAC 4 cut(s) 737, 974, 1025, 1457
AfiI CCNNNNNNNGG 2 cut(s) 177, 1370
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 5 cut(s) 514, 530, 650, 872, 1444
AhdI GACNNNNNGTC 1 cut(s) 166
AjiI CACGTC 1 cut(s) 613
AjuI GAANNNNNNNTTGG 2 cut(s) 1146, 1178
AluBI AGCT 7 cut(s) 134, 235, 414, 507, 960, 1436, 1508
AluI AGCT 7 cut(s) 134, 235, 414, 507, 960, 1436, 1508
Alw21I GWGCWC 6 cut(s) 237, 416, 509, 539, 910, 962
Alw26I GTCTC 5 cut(s) 551, 597, 831, 1052, 1635
Alw44I GTGCAC 1 cut(s) 535
AlwI GGATC 6 cut(s) 98, 297, 546, 559, 586, 1593
AoxI GGCC 6 cut(s) 156, 387, 922, 1367, 1372, 1404
ApaLI GTGCAC 1 cut(s) 535
ApoI RAATTY 2 cut(s) 398, 1034
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 1 cut(s) 1467
AspS9I GGNCC 3 cut(s) 339, 1368, 1531
AsuC2I CCSGG 3 cut(s) 6, 848, 1371
AsuHPI GGTGA 4 cut(s) 88, 433, 836, 1213
AsuNHI GCTAGC 1 cut(s) 1219
AvaII GGWCC 2 cut(s) 339, 1531
BaeGI GKGCMC 1 cut(s) 539
BaeI ACNNNNGTAYC 2 cut(s) 1382, 1415
BamHI GGATCC 1 cut(s) 551
BanII GRGCYC 4 cut(s) 237, 416, 509, 962
Bbv12I GWGCWC 6 cut(s) 237, 416, 509, 539, 910, 962
BccI CCATC 6 cut(s) 353, 379, 428, 808, 812, 1162
BceAI ACGGC 3 cut(s) 860, 937, 1382
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 3 cut(s) 6, 848, 1371
BcoDI GTCTC 5 cut(s) 551, 597, 831, 1052, 1635
BfaI CTAG 3 cut(s) 1220, 1346, 1623
BglI GCCNNNNNGGC 1 cut(s) 921
BlpI GCTNAGC 1 cut(s) 312
BmcAI AGTACT 2 cut(s) 974, 1457
Bme1390I CCNGG 3 cut(s) 6, 848, 1371
Bme18I GGWCC 2 cut(s) 339, 1531
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 613
BmgT120I GGNCC 3 cut(s) 339, 1368, 1531
BmiI GGNNCC 5 cut(s) 109, 341, 553, 1596, 1647
BmrFI CCNGG 3 cut(s) 6, 848, 1371
BmrI ACTGGG 1 cut(s) 719
BmsI GCATC 2 cut(s) 230, 873
BmtI GCTAGC 1 cut(s) 1223
BmuI ACTGGG 1 cut(s) 719
BplI GAGNNNNNCTC 4 cut(s) 937, 969, 959, 991
BpmI CTGGAG 1 cut(s) 430
Bpu1102I GCTNAGC 1 cut(s) 312
BpuMI CCSGG 3 cut(s) 6, 848, 1371
Bsa29I ATCGAT 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 1635
BsaJI CCNNGG 3 cut(s) 390, 547, 1364
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 1370
Bse1I ACTGG 3 cut(s) 423, 565, 725
Bse3DI GCAATG 1 cut(s) 1656
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 390, 547, 1364
BseGI GGATG 5 cut(s) 439, 481, 1078, 1173, 1318
BseLI CCNNNNNNNGG 2 cut(s) 177, 1370
BseMI GCAATG 1 cut(s) 1656
BseMII CTCAG 4 cut(s) 69, 326, 990, 1053
BseNI ACTGG 3 cut(s) 423, 565, 725
BseRI GAGGAG 9 cut(s) 262, 392, 395, 780, 983, 1043, 1118, 1331, 1334
BseSI GKGCMC 1 cut(s) 539
BseX3I CGGCCG 3 cut(s) 156, 922, 1372
Bsh1236I CGCG 1 cut(s) 1377
Bsh1285I CGRYCG 3 cut(s) 159, 925, 1375
BshFI GGCC 6 cut(s) 158, 389, 924, 1369, 1374, 1406
BshVI ATCGAT 1 cut(s) 348
BsiEI CGRYCG 3 cut(s) 159, 925, 1375
BsiHKAI GWGCWC 6 cut(s) 237, 416, 509, 539, 910, 962
BsiSI CCGG 4 cut(s) 5, 600, 847, 1371
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 2 cut(s) 177, 1370
BsmAI GTCTC 5 cut(s) 551, 597, 831, 1052, 1635
BsmBI CGTCTC 1 cut(s) 831
BsmFI GGGAC 1 cut(s) 863
BsmI GAATGC 1 cut(s) 1450
BsnI GGCC 6 cut(s) 158, 389, 924, 1369, 1374, 1406
Bso31I GGTCTC 1 cut(s) 1635
Bsp1286I GDGCHC 6 cut(s) 237, 416, 509, 539, 910, 962
Bsp143I GATC 9 cut(s) 90, 289, 349, 358, 551, 578, 673, 779, 1585
Bsp1720I GCTNAGC 1 cut(s) 312
BspANI GGCC 6 cut(s) 158, 389, 924, 1369, 1374, 1406
BspCNI CTCAG 4 cut(s) 70, 325, 989, 1054
BspDI ATCGAT 1 cut(s) 348
BspFNI CGCG 1 cut(s) 1377
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 5 cut(s) 109, 341, 553, 1596, 1647
BspOI GCTAGC 1 cut(s) 1223
BspPI GGATC 6 cut(s) 98, 297, 546, 559, 586, 1593
BspQI GCTCTTC 2 cut(s) 996, 1517
BspTNI GGTCTC 1 cut(s) 1635
BsrDI GCAATG 1 cut(s) 1656
BsrI ACTGG 3 cut(s) 423, 565, 725
BssECI CCNNGG 3 cut(s) 390, 547, 1364
BssMI GATC 9 cut(s) 90, 289, 349, 358, 551, 578, 673, 779, 1585
Bst4CI ACNGT 2 cut(s) 153, 1210
Bst6I CTCTTC 6 cut(s) 37, 711, 834, 996, 1517, 1638
BstAPI GCANNNNNTGC 1 cut(s) 1558
BstC8I GCNNGC 2 cut(s) 183, 1221
BstDEI CTNAG 7 cut(s) 14, 78, 312, 753, 976, 1062, 1395
BstDSI CCRYGG 1 cut(s) 1364
BstF5I GGATG 5 cut(s) 439, 481, 1078, 1173, 1318
BstFNI CGCG 1 cut(s) 1377
BstHHI GCGC 1 cut(s) 1467
BstKTI GATC 9 cut(s) 93, 292, 352, 361, 554, 581, 676, 782, 1588
BstMAI GTCTC 5 cut(s) 551, 597, 831, 1052, 1635
BstMBI GATC 9 cut(s) 90, 289, 349, 358, 551, 578, 673, 779, 1585
BstMCI CGRYCG 3 cut(s) 159, 925, 1375
BstMWI GCNNNNNNNGC 8 cut(s) 114, 543, 921, 1415, 1424, 1433, 1471, 1558
BstNSI RCATGY 2 cut(s) 166, 713
BstSCI CCNGG 3 cut(s) 4, 846, 1369
BstSLI GKGCMC 1 cut(s) 539
BstUI CGCG 1 cut(s) 1377
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BstZI CGGCCG 3 cut(s) 156, 922, 1372
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 6 cut(s) 158, 389, 924, 1369, 1374, 1406
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 1364
BtrI CACGTC 1 cut(s) 613
BtsCI GGATG 5 cut(s) 439, 481, 1078, 1173, 1318
BtsIMutI CAGTG 4 cut(s) 75, 149, 416, 537
Cac8I GCNNGC 2 cut(s) 183, 1221
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 1467
Cfr13I GGNCC 3 cut(s) 339, 1368, 1531
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 1 cut(s) 813
Csp6I GTAC 4 cut(s) 736, 973, 1024, 1456
CviAII CATG 8 cut(s) 46, 55, 163, 208, 241, 710, 1519, 1591
CviQI GTAC 4 cut(s) 736, 973, 1024, 1456
DdeI CTNAG 7 cut(s) 14, 78, 312, 753, 976, 1062, 1395
DpnI GATC 9 cut(s) 92, 291, 351, 360, 553, 580, 675, 781, 1587
DpnII GATC 9 cut(s) 90, 289, 349, 358, 551, 578, 673, 779, 1585
DriI GACNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 4 cut(s) 156, 387, 922, 1372
EagI CGGCCG 3 cut(s) 156, 922, 1372
Eam1104I CTCTTC 6 cut(s) 37, 711, 834, 996, 1517, 1638
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 6 cut(s) 37, 711, 834, 996, 1517, 1638
Ecl136II GAGCTC 4 cut(s) 235, 414, 507, 960
EclXI CGGCCG 3 cut(s) 156, 922, 1372
Eco24I GRGCYC 4 cut(s) 237, 416, 509, 962
Eco31I GGTCTC 1 cut(s) 1635
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 339, 1531
Eco52I CGGCCG 3 cut(s) 156, 922, 1372
Eco53kI GAGCTC 4 cut(s) 235, 414, 507, 960
Eco57I CTGAAG 3 cut(s) 576, 588, 1020
EcoICRI GAGCTC 4 cut(s) 235, 414, 507, 960
EcoRV GATATC 1 cut(s) 406
EcoT38I GRGCYC 4 cut(s) 237, 416, 509, 962
Esp3I CGTCTC 1 cut(s) 831
FaeI CATG 8 cut(s) 49, 58, 166, 211, 244, 713, 1522, 1594
FaqI GGGAC 1 cut(s) 863
FatI CATG 8 cut(s) 45, 54, 162, 207, 240, 709, 1518, 1590
FauI CCCGC 2 cut(s) 1432, 1521
FbaI TGATCA 1 cut(s) 358
FokI GGATG 5 cut(s) 446, 468, 1085, 1180, 1325
FriOI GRGCYC 4 cut(s) 237, 416, 509, 962
FspBI CTAG 3 cut(s) 1220, 1346, 1623
GlaI GCGC 1 cut(s) 1466
GsuI CTGGAG 1 cut(s) 430
HaeIII GGCC 6 cut(s) 158, 389, 924, 1369, 1374, 1406
HapII CCGG 4 cut(s) 5, 600, 847, 1371
HgaI GACGC 1 cut(s) 813
HhaI GCGC 1 cut(s) 1467
Hin1II CATG 8 cut(s) 49, 58, 166, 211, 244, 713, 1522, 1594
Hin6I GCGC 1 cut(s) 1465
HinP1I GCGC 1 cut(s) 1465
HincII GTYRAC 2 cut(s) 1042, 1191
HindII GTYRAC 2 cut(s) 1042, 1191
HinfI GANTC 6 cut(s) 424, 460, 523, 841, 1146, 1261
HpaII CCGG 4 cut(s) 5, 600, 847, 1371
HphI GGTGA 4 cut(s) 88, 433, 836, 1213
Hpy166II GTNNAC 4 cut(s) 26, 537, 1042, 1191
Hpy188III TCNNGA 7 cut(s) 46, 353, 409, 464, 527, 677, 1668
Hpy8I GTNNAC 4 cut(s) 26, 537, 1042, 1191
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 6 cut(s) 301, 367, 563, 597, 897, 1620
HpyCH4III ACNGT 2 cut(s) 153, 1210
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 4 cut(s) 221, 537, 1614, 1656
HpyF10VI GCNNNNNNNGC 8 cut(s) 114, 543, 921, 1415, 1424, 1433, 1471, 1558
HpyF3I CTNAG 7 cut(s) 14, 78, 312, 753, 976, 1062, 1395
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 8 cut(s) 49, 58, 166, 211, 244, 713, 1522, 1594
HspAI GCGC 1 cut(s) 1465
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 9 cut(s) 90, 289, 349, 358, 551, 578, 673, 779, 1585
LguI GCTCTTC 2 cut(s) 996, 1517
LmnI GCTCC 5 cut(s) 58, 113, 411, 821, 1645
LweI GCATC 2 cut(s) 230, 873
MaeI CTAG 3 cut(s) 1220, 1346, 1623
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 4 cut(s) 73, 94, 1201, 1398
MalI GATC 9 cut(s) 92, 291, 351, 360, 553, 580, 675, 781, 1587
MboI GATC 9 cut(s) 90, 289, 349, 358, 551, 578, 673, 779, 1585
MfeI CAATTG 2 cut(s) 1242, 1556
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 6 cut(s) 237, 416, 509, 539, 910, 962
MluCI AATT 6 cut(s) 398, 1016, 1034, 1161, 1242, 1556
MlyI GAGTC 3 cut(s) 532, 835, 1270
MmeI TCCRAC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 5 cut(s) 366, 621, 837, 1287, 1299
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 4 cut(s) 5, 600, 847, 1371
MspR9I CCNGG 3 cut(s) 6, 848, 1371
MunI CAATTG 2 cut(s) 1242, 1556
Mva1269I GAATGC 1 cut(s) 1450
MvnI CGCG 1 cut(s) 1377
MwoI GCNNNNNNNGC 8 cut(s) 114, 543, 921, 1415, 1424, 1433, 1471, 1558
NciI CCSGG 3 cut(s) 6, 848, 1371
NdeII GATC 9 cut(s) 90, 289, 349, 358, 551, 578, 673, 779, 1585
NheI GCTAGC 1 cut(s) 1219
NlaIII CATG 8 cut(s) 49, 58, 166, 211, 244, 713, 1522, 1594
NlaIV GGNNCC 5 cut(s) 109, 341, 553, 1596, 1647
NmeAIII GCCGAG 2 cut(s) 84, 415
NmuCI GTSAC 4 cut(s) 73, 94, 1201, 1398
NspI RCATGY 2 cut(s) 166, 713
PagI TCATGA 1 cut(s) 45
PciI ACATGT 1 cut(s) 162
PciSI GCTCTTC 2 cut(s) 996, 1517
PcsI WCGNNNNNNNCGW 1 cut(s) 1074
PctI GAATGC 1 cut(s) 1450
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 424, 460, 1146
PflMI CCANNNNNTGG 1 cut(s) 177
PleI GAGTC 3 cut(s) 531, 835, 1269
PpsI GAGTC 3 cut(s) 531, 835, 1269
PscI ACATGT 1 cut(s) 162
Psp124BI GAGCTC 4 cut(s) 237, 416, 509, 962
PspN4I GGNNCC 5 cut(s) 109, 341, 553, 1596, 1647
PspPI GGNCC 3 cut(s) 339, 1368, 1531
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 4 cut(s) 737, 974, 1025, 1457
RsaNI GTAC 4 cut(s) 736, 973, 1024, 1456
RseI CAYNNNNRTG 1 cut(s) 611
SacI GAGCTC 4 cut(s) 237, 416, 509, 962
SapI GCTCTTC 2 cut(s) 996, 1517
SaqAI TTAA 5 cut(s) 366, 621, 837, 1287, 1299
Sau3AI GATC 9 cut(s) 90, 289, 349, 358, 551, 578, 673, 779, 1585
Sau96I GGNCC 3 cut(s) 339, 1368, 1531
ScaI AGTACT 2 cut(s) 974, 1457
SchI GAGTC 3 cut(s) 532, 835, 1270
ScrFI CCNGG 3 cut(s) 6, 848, 1371
SduI GDGCHC 6 cut(s) 237, 416, 509, 539, 910, 962
SfaNI GCATC 2 cut(s) 230, 873
SinI GGWCC 2 cut(s) 339, 1531
SmiMI CAYNNNNRTG 1 cut(s) 611
Sse9I AATT 6 cut(s) 398, 1016, 1034, 1161, 1242, 1556
SspMI CTAG 3 cut(s) 1220, 1346, 1623
SstI GAGCTC 4 cut(s) 237, 416, 509, 962
StyD4I CCNGG 3 cut(s) 4, 846, 1369
TaaI ACNGT 2 cut(s) 153, 1210
TaiI ACGT 1 cut(s) 615
TaqI TCGA 4 cut(s) 348, 503, 778, 881
TasI AATT 6 cut(s) 398, 1016, 1034, 1161, 1242, 1556
TatI WGTACW 3 cut(s) 735, 972, 1455
TauI GCSGC 5 cut(s) 927, 1377, 1409, 1430, 1433
TfiI GAWTC 3 cut(s) 424, 460, 1146
Tru1I TTAA 5 cut(s) 366, 621, 837, 1287, 1299
Tru9I TTAA 5 cut(s) 366, 621, 837, 1287, 1299
TscAI CASTG 4 cut(s) 82, 156, 423, 544
TseFI GTSAC 4 cut(s) 73, 94, 1201, 1398
Tsp45I GTSAC 4 cut(s) 73, 94, 1201, 1398
TspDTI ATGAA 9 cut(s) 34, 62, 224, 470, 999, 1202, 1247, 1346, 1535
TspGWI ACGGA 1 cut(s) 893
TspRI CASTG 4 cut(s) 82, 156, 423, 544
Van91I CCANNNNNTGG 1 cut(s) 177
VneI GTGCAC 1 cut(s) 535
VpaK11BI GGWCC 2 cut(s) 339, 1531
XapI RAATTY 2 cut(s) 398, 1034
XceI RCATGY 2 cut(s) 166, 713
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 3 cut(s) 1220, 1346, 1623
ZrmI AGTACT 2 cut(s) 974, 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.