FvH4_6g31921

Topless-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000194
Physical Location & Seq
Forward (+)
25010941 .. 25016108
5168 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31921.t1

Sequence Viewer

Length: 939 bp
ATGTCCAAGCCCAAGCTGCACCACAAGAAACAAATGAAATCAAAACTGTCATCCAGGCCCAGTCGTCGCTACCCAGCCAGAGTCGCTGGACCACCACCATTCTTGCTCGGCCAACCCAACCCCGCCAGATCGAGCCCTGATCATGTTATGTCTTACCCAAGATCGGATTTGTGGCCAGATCGGCCACCGCAACATCCCATCAACAAACAACATCAACCGAGAGCATGGCTCCGTCTAGACCCACAAATGGTCGTTAAAGGCCCGTCCGACGACGGCAAAACGACTTGCCACCGGACATGGAGCTCTATGGTGGTGAATGAGCTACTCTTTGAGGTCGAAGATAGATCTAAGGTTGGGTGCATTATGAGAGATTGTAAGTCATATTTGACATCTTTACGCTCTATTCATATTAGACATATCTTTAGAGAAGCATATGGTGTGGCCAAAAGATTGGCCCATCTTGCTAGTGCCAGTAAGCTTGATGATGTTTGGTTAGATGAGACACATGTTATTATTCAGGATGCTGAGCTGTTACATGTTGGGCTTGACTATTATGGATCGAATAATATGACCTCAGTGGTTGGGTCTTTAGTTGGTCTTCGTTTGGGTTGGCTGCCGGAAGGGTCTTTTAAAGCAAAGAAGGTTGATCACCTAGTTGCAGCTGTTGATGATGGGATGGCTAACCTTAGTGCCAATAGTATGCCGTGTCTGAGTTGTGTTCTTCCTCGAAGAACATGCACTATTTCTATTATGGAAGAAGAAGAAGAAGAAGAGGGAAAAACGAAGACGGAGAGATTAGGAGAAGACTTCGGCGACTTCCGGCGTTGGGTCTTGTCCCCAGCGAATGTGGGTTTCATATTTGATGAAATTTGGGAGATTGGGGGAAGGAGAACACGAGGACTTTGTGGGAAGAGACTAGAAGAAAGAGAAAGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box WD40

Protein Analysis

313

Amino Acids

35.39

Weight (kDa)

8.91

Isoelectric Point (pI)

65.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 937
AciI CCGC 2 cut(s) 123, 188
AclWI GGATC 1 cut(s) 565
AcoI YGGCCR 4 cut(s) 109, 173, 182, 441
AcsI RAATTY 1 cut(s) 867
AfiI CCNNNNNNNGG 3 cut(s) 163, 247, 826
AflIII ACRYGT 2 cut(s) 505, 535
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 7 cut(s) 16, 303, 322, 478, 529, 662, 933
AluI AGCT 7 cut(s) 16, 303, 322, 478, 529, 662, 933
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 2 cut(s) 494, 907
AlwI GGATC 1 cut(s) 565
AoxI GGCC 7 cut(s) 56, 109, 173, 182, 259, 441, 453
ApeKI GCWGC 3 cut(s) 16, 613, 659
ApoI RAATTY 1 cut(s) 867
AspS9I GGNCC 4 cut(s) 57, 89, 260, 454
AsuHPI GGTGA 2 cut(s) 325, 641
AvaII GGWCC 1 cut(s) 89
BalI TGGCCA 2 cut(s) 175, 443
BanII GRGCYC 2 cut(s) 137, 305
BauI CACGAG 1 cut(s) 894
BbsI GAAGAC 3 cut(s) 590, 791, 810
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 3 cut(s) 3, 600, 671
BccI CCATC 4 cut(s) 206, 465, 665, 670
BceAI ACGGC 2 cut(s) 289, 688
BcgI CGANNNNNNTGC 2 cut(s) 717, 751
BciT130I CCWGG 1 cut(s) 55
BclI TGATCA 2 cut(s) 139, 646
BcoDI GTCTC 2 cut(s) 494, 907
BfaI CTAG 4 cut(s) 236, 465, 653, 917
BglI GCCNNNNNGGC 1 cut(s) 181
BglII AGATCT 1 cut(s) 344
BisI GCNGC 3 cut(s) 17, 614, 660
BlpI GCTNAGC 1 cut(s) 525
BlsI GCNGC 3 cut(s) 18, 615, 661
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 4 cut(s) 57, 89, 260, 454
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 511
BmuI ACTGGG 1 cut(s) 54
BpiI GAAGAC 3 cut(s) 590, 791, 810
BplI GAGNNNNNCTC 2 cut(s) 213, 245
Bpu1102I GCTNAGC 1 cut(s) 525
BsaWI WCCGGW 1 cut(s) 291
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 247, 826
Bse1I ACTGG 2 cut(s) 60, 471
BseBI CCWGG 1 cut(s) 55
BseGI GGATG 4 cut(s) 50, 193, 526, 681
BseLI CCNNNNNNNGG 3 cut(s) 163, 247, 826
BseMII CTCAG 3 cut(s) 516, 588, 701
BseNI ACTGG 2 cut(s) 60, 471
BseXI GCAGC 3 cut(s) 3, 600, 671
BseYI CCCAGC 2 cut(s) 73, 838
BshFI GGCC 7 cut(s) 58, 111, 175, 184, 261, 443, 455
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 3 cut(s) 292, 617, 820
BslFI GGGAC 1 cut(s) 820
BslI CCNNNNNNNGG 3 cut(s) 163, 247, 826
BsmAI GTCTC 2 cut(s) 494, 907
BsmFI GGGAC 1 cut(s) 820
BsnI GGCC 7 cut(s) 58, 111, 175, 184, 261, 443, 455
Bsp1286I GDGCHC 2 cut(s) 137, 305
Bsp143I GATC 7 cut(s) 128, 139, 161, 178, 344, 557, 646
Bsp1720I GCTNAGC 1 cut(s) 525
BspACI CCGC 2 cut(s) 123, 188
BspANI GGCC 7 cut(s) 58, 111, 175, 184, 261, 443, 455
BspCNI CTCAG 3 cut(s) 517, 587, 702
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 1 cut(s) 565
BsrI ACTGG 2 cut(s) 60, 471
BssMI GATC 7 cut(s) 128, 139, 161, 178, 344, 557, 646
BssSI CACGAG 1 cut(s) 894
Bst2BI CACGAG 1 cut(s) 894
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 2 cut(s) 765, 905
BstDEI CTNAG 5 cut(s) 348, 525, 574, 686, 710
BstF5I GGATG 4 cut(s) 50, 193, 526, 681
BstKTI GATC 7 cut(s) 131, 142, 164, 181, 347, 560, 649
BstMAI GTCTC 2 cut(s) 494, 907
BstMBI GATC 7 cut(s) 128, 139, 161, 178, 344, 557, 646
BstMWI GCNNNNNNNGC 4 cut(s) 16, 83, 181, 461
BstNI CCWGG 1 cut(s) 55
BstNSI RCATGY 3 cut(s) 509, 539, 738
BstSCI CCNGG 1 cut(s) 53
BstV1I GCAGC 3 cut(s) 3, 600, 671
BstV2I GAAGAC 3 cut(s) 590, 791, 810
BstX2I RGATCY 1 cut(s) 344
BstXI CCANNNNNNTGG 1 cut(s) 451
BstYI RGATCY 1 cut(s) 344
BsuRI GGCC 7 cut(s) 58, 111, 175, 184, 261, 443, 455
BtsCI GGATG 4 cut(s) 50, 193, 526, 681
BtsIMutI CAGTG 1 cut(s) 582
Cfr13I GGNCC 4 cut(s) 57, 89, 260, 454
CspCI CAANNNNNGTGG 2 cut(s) 84, 119
CviAII CATG 6 cut(s) 143, 225, 297, 506, 536, 735
DdeI CTNAG 5 cut(s) 348, 525, 574, 686, 710
DpnI GATC 7 cut(s) 130, 141, 163, 180, 346, 559, 648
DpnII GATC 7 cut(s) 128, 139, 161, 178, 344, 557, 646
DraI TTTAAA 1 cut(s) 631
EaeI YGGCCR 4 cut(s) 109, 173, 182, 441
Eam1104I CTCTTC 2 cut(s) 765, 905
EarI CTCTTC 2 cut(s) 765, 905
Ecl136II GAGCTC 1 cut(s) 303
Eco24I GRGCYC 2 cut(s) 137, 305
Eco47I GGWCC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 53
EcoT38I GRGCYC 2 cut(s) 137, 305
FaeI CATG 6 cut(s) 146, 228, 300, 509, 539, 738
FaqI GGGAC 1 cut(s) 820
FatI CATG 6 cut(s) 142, 224, 296, 505, 535, 734
FauI CCCGC 1 cut(s) 130
FauNDI CATATG 1 cut(s) 433
FbaI TGATCA 2 cut(s) 139, 646
Fnu4HI GCNGC 3 cut(s) 17, 614, 660
FokI GGATG 4 cut(s) 37, 180, 533, 688
FriOI GRGCYC 2 cut(s) 137, 305
Fsp4HI GCNGC 3 cut(s) 17, 614, 660
FspBI CTAG 4 cut(s) 236, 465, 653, 917
GluI GCNGC 3 cut(s) 17, 614, 660
GsaI CCCAGC 2 cut(s) 77, 842
HaeIII GGCC 7 cut(s) 58, 111, 175, 184, 261, 443, 455
HapII CCGG 3 cut(s) 292, 617, 820
Hin1II CATG 6 cut(s) 146, 228, 300, 509, 539, 738
HindIII AAGCTT 2 cut(s) 476, 931
HinfI GANTC 1 cut(s) 81
HpaII CCGG 3 cut(s) 292, 617, 820
HphI GGTGA 2 cut(s) 325, 641
Hpy188I TCNGA 3 cut(s) 166, 268, 711
Hpy188III TCNNGA 2 cut(s) 236, 518
Hpy99I CGWCG 3 cut(s) 69, 272, 275
HpyAV CCTTC 3 cut(s) 614, 634, 879
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4V TGCA 4 cut(s) 19, 360, 659, 738
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 83, 181, 461
HpyF3I CTNAG 5 cut(s) 348, 525, 574, 686, 710
Hsp92II CATG 6 cut(s) 146, 228, 300, 509, 539, 738
Ksp22I TGATCA 2 cut(s) 139, 646
Kzo9I GATC 7 cut(s) 128, 139, 161, 178, 344, 557, 646
LmnI GCTCC 2 cut(s) 234, 300
Lsp1109I GCAGC 3 cut(s) 3, 600, 671
LweI GCATC 1 cut(s) 511
MaeI CTAG 4 cut(s) 236, 465, 653, 917
MaeIII GTNAC 1 cut(s) 531
MalI GATC 7 cut(s) 130, 141, 163, 180, 346, 559, 648
MboI GATC 7 cut(s) 128, 139, 161, 178, 344, 557, 646
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 2 cut(s) 137, 305
MlsI TGGCCA 2 cut(s) 175, 443
MluCI AATT 1 cut(s) 867
MluNI TGGCCA 2 cut(s) 175, 443
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 5 cut(s) 325, 583, 735, 766, 890
Mox20I TGGCCA 2 cut(s) 175, 443
MscI TGGCCA 2 cut(s) 175, 443
MseI TTAA 2 cut(s) 255, 630
Msp20I TGGCCA 2 cut(s) 175, 443
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 3 cut(s) 292, 617, 820
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
MwoI GCNNNNNNNGC 4 cut(s) 16, 83, 181, 461
NdeI CATATG 1 cut(s) 433
NdeII GATC 7 cut(s) 128, 139, 161, 178, 344, 557, 646
NlaIII CATG 6 cut(s) 146, 228, 300, 509, 539, 738
NlaIV GGNNCC 1 cut(s) 230
NmeAIII GCCGAG 1 cut(s) 87
NspI RCATGY 3 cut(s) 509, 539, 738
PciI ACATGT 2 cut(s) 505, 535
PkrI GCNGC 3 cut(s) 18, 615, 661
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PscI ACATGT 2 cut(s) 505, 535
PsiI TTATAA 1 cut(s) 937
Psp124BI GAGCTC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 53
PspFI CCCAGC 2 cut(s) 73, 838
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 4 cut(s) 57, 89, 260, 454
PsuI RGATCY 1 cut(s) 344
PvuII CAGCTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 305
SaqAI TTAA 2 cut(s) 255, 630
SatI GCNGC 3 cut(s) 17, 614, 660
Sau3AI GATC 7 cut(s) 128, 139, 161, 178, 344, 557, 646
Sau96I GGNCC 4 cut(s) 57, 89, 260, 454
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 2 cut(s) 137, 305
SfaNI GCATC 1 cut(s) 511
SfiI GGCCNNNNNGGCC 1 cut(s) 181
SinI GGWCC 1 cut(s) 89
Sse9I AATT 1 cut(s) 867
SsiI CCGC 2 cut(s) 123, 188
SspMI CTAG 4 cut(s) 236, 465, 653, 917
SstI GAGCTC 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 48
TaqI TCGA 4 cut(s) 131, 336, 560, 727
TasI AATT 1 cut(s) 867
Tru1I TTAA 2 cut(s) 255, 630
Tru9I TTAA 2 cut(s) 255, 630
TscAI CASTG 1 cut(s) 582
TseI GCWGC 3 cut(s) 16, 613, 659
TspDTI ATGAA 4 cut(s) 50, 395, 844, 879
TspGWI ACGGA 2 cut(s) 221, 803
TspRI CASTG 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 1 cut(s) 867
XbaI TCTAGA 1 cut(s) 235
XceI RCATGY 3 cut(s) 509, 539, 738
XspI CTAG 4 cut(s) 236, 465, 653, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.