pycom01g21690

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000194
Physical Location & Seq
Forward (+)
19633348 .. 19634247
900 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g21690.1

Sequence Viewer

Length: 738 bp
ATGATTCAGGGTGCGGTTGACCAAGGTAGGTTGGATGGTGTTAAGATGGGTGGATCCGGACCCGTGATTTCTCACCTCTTCTTTGCGGATGATACCCTTTTGTTTTTGCGGGCTGATATGAAAAACTGCCGGAATTTGAGAAATCTGCTGGACAATTTTTGTGTGGCGTCGGGGCAGAAGGTAAATTTGGAGAAATCTAATGTATATTTTGGGGCTAACGTTCCGAAGGTGAATGCTGATCAGATGGGGAACGCCCTTGGTATGAAAGTTGTAATCAATCCGGGAACATATTTGGGGGTCCCTGCCATTTGGGCCACTGTTTGTAAGGAATTGGATGCGTTGGTGGCTGGATTCTGGTGGGGATGTAAGGAGGGAGCCCACAAGATTCACTGGGTTTCAAATGAGGTTTTGGGTTTGCCCAAAGATATAGGTGGTTTAGGCTTCAGAAATTTTCAGGAATTTAATGATGCTCTGCTTGCTAAACAGTGCTGGCGGTTAATCACGGAACCGGATTCGTTGTGGGCAAAGGTGATTAAGGCTCGGTATTTTCCACATAGATCGATCTGGGATGCGAAGAAGGGTGGACGGGCCTCTTGGGCGTGGAGCAGCCTCATCTGTGGCAGGGACATGATTAGGGAAGGCTCCCATTGGCATGATCGATCTTGGGTGGCCAGGAGGTGCGGGTGTGGCAGGATAGGTGGCTTCCATCCTTGCCCCTTGGACACCCGGTGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

246

Amino Acids

27.33

Weight (kDa)

9.24

Isoelectric Point (pI)

22.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 729
AccIII TCCGGA 1 cut(s) 56
AciI CCGC 5 cut(s) 14, 86, 109, 493, 681
AclI AACGTT 1 cut(s) 219
AclWI GGATC 2 cut(s) 48, 61
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 4 cut(s) 133, 184, 448, 458
AcuI CTGAAG 1 cut(s) 427
AcyI GRCGYC 1 cut(s) 167
AdeI CACNNNGTG 1 cut(s) 729
AfiI CCNNNNNNNGG 1 cut(s) 732
AgsI TTSAA 1 cut(s) 399
AjnI CCWGG 1 cut(s) 671
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AlwI GGATC 2 cut(s) 48, 61
Aor13HI TCCGGA 1 cut(s) 56
AoxI GGCC 3 cut(s) 312, 588, 669
ApeKI GCWGC 1 cut(s) 606
ApoI RAATTY 4 cut(s) 133, 184, 448, 458
AspS9I GGNCC 4 cut(s) 59, 298, 312, 588
AsuC2I CCSGG 2 cut(s) 282, 727
AsuHPI GGTGA 3 cut(s) 65, 241, 541
AvaII GGWCC 2 cut(s) 59, 298
BalI TGGCCA 1 cut(s) 671
BamHI GGATCC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 729
BanII GRGCYC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 618
BccI CCATC 4 cut(s) 29, 40, 238, 714
BciT130I CCWGG 1 cut(s) 673
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 2 cut(s) 282, 727
BglI GCCNNNNNGGC 2 cut(s) 311, 596
BisI GCNGC 1 cut(s) 607
BlsI GCNGC 1 cut(s) 608
Bme1390I CCNGG 3 cut(s) 282, 673, 727
Bme18I GGWCC 2 cut(s) 59, 298
BmgT120I GGNCC 4 cut(s) 59, 298, 312, 588
BmiI GGNNCC 8 cut(s) 55, 61, 299, 300, 376, 507, 643, 731
BmrFI CCNGG 3 cut(s) 282, 673, 727
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 3 cut(s) 325, 457, 559
BmuI ACTGGG 1 cut(s) 400
BpuMI CCSGG 2 cut(s) 282, 727
Bsa29I ATCGAT 2 cut(s) 560, 658
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 22, 256, 717
BsaWI WCCGGW 2 cut(s) 56, 508
Bsc4I CCNNNNNNNGG 1 cut(s) 732
Bse118I RCCGGY 1 cut(s) 732
Bse1I ACTGG 1 cut(s) 395
BseAI TCCGGA 1 cut(s) 56
BseBI CCWGG 1 cut(s) 673
BseCI ATCGAT 2 cut(s) 560, 658
BseDI CCNNGG 3 cut(s) 22, 256, 717
BseGI GGATG 6 cut(s) 40, 94, 340, 368, 574, 706
BseLI CCNNNNNNNGG 1 cut(s) 732
BseNI ACTGG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 618
BshFI GGCC 3 cut(s) 314, 590, 671
BshNI GGYRCC 1 cut(s) 729
BshVI ATCGAT 2 cut(s) 560, 658
BsiSI CCGG 6 cut(s) 57, 130, 281, 509, 727, 733
BslFI GGGAC 2 cut(s) 284, 638
BslI CCNNNNNNNGG 1 cut(s) 732
BsmFI GGGAC 2 cut(s) 284, 638
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 3 cut(s) 314, 590, 671
Bsp1286I GDGCHC 1 cut(s) 379
Bsp13I TCCGGA 1 cut(s) 56
Bsp143I GATC 6 cut(s) 53, 238, 557, 561, 655, 659
BspACI CCGC 5 cut(s) 14, 86, 109, 493, 681
BspANI GGCC 3 cut(s) 314, 590, 671
BspDI ATCGAT 2 cut(s) 560, 658
BspEI TCCGGA 1 cut(s) 56
BspLI GGNNCC 8 cut(s) 55, 61, 299, 300, 376, 507, 643, 731
BspPI GGATC 2 cut(s) 48, 61
BspT107I GGYRCC 1 cut(s) 729
BsrFI RCCGGY 1 cut(s) 732
BsrI ACTGG 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 732
BssECI CCNNGG 3 cut(s) 22, 256, 717
BssMI GATC 6 cut(s) 53, 238, 557, 561, 655, 659
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 3 cut(s) 22, 256, 717
Bst2UI CCWGG 1 cut(s) 673
Bst4CI ACNGT 2 cut(s) 319, 486
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 111, 477, 491
BstF5I GGATG 6 cut(s) 40, 94, 340, 368, 574, 706
BstKTI GATC 6 cut(s) 56, 241, 560, 564, 658, 662
BstMBI GATC 6 cut(s) 53, 238, 557, 561, 655, 659
BstMWI GCNNNNNNNGC 5 cut(s) 311, 344, 476, 596, 687
BstNI CCWGG 1 cut(s) 673
BstSCI CCNGG 3 cut(s) 280, 671, 725
BstV1I GCAGC 1 cut(s) 618
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu15I ATCGAT 2 cut(s) 560, 658
BsuRI GGCC 3 cut(s) 314, 590, 671
BsuTUI ATCGAT 2 cut(s) 560, 658
BtsCI GGATG 6 cut(s) 40, 94, 340, 368, 574, 706
BtsIMutI CAGTG 3 cut(s) 315, 388, 491
Cac8I GCNNGC 3 cut(s) 111, 477, 491
Cfr10I RCCGGY 1 cut(s) 732
Cfr13I GGNCC 4 cut(s) 59, 298, 312, 588
ClaI ATCGAT 2 cut(s) 560, 658
CseI GACGC 1 cut(s) 156
CviAII CATG 2 cut(s) 628, 653
DpnI GATC 6 cut(s) 55, 240, 559, 563, 657, 661
DpnII GATC 6 cut(s) 53, 238, 557, 561, 655, 659
DraIII CACNNNGTG 1 cut(s) 729
EaeI YGGCCR 1 cut(s) 669
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco130I CCWWGG 3 cut(s) 22, 256, 717
Eco24I GRGCYC 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 59, 298
Eco57I CTGAAG 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 671
EcoT14I CCWWGG 3 cut(s) 22, 256, 717
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 3 cut(s) 22, 256, 717
FaeI CATG 2 cut(s) 631, 656
FaiI YATR 8 cut(s) 119, 205, 263, 289, 428, 555, 629, 654
FaqI GGGAC 2 cut(s) 284, 638
FatI CATG 2 cut(s) 627, 652
FauI CCCGC 2 cut(s) 102, 674
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 607
FokI GGATG 6 cut(s) 47, 101, 347, 375, 581, 693
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 1 cut(s) 607
GluI GCNGC 1 cut(s) 607
HaeIII GGCC 3 cut(s) 314, 590, 671
HapII CCGG 6 cut(s) 57, 130, 281, 509, 727, 733
HgaI GACGC 1 cut(s) 156
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 2 cut(s) 631, 656
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 4 cut(s) 4, 351, 385, 512
HpaII CCGG 6 cut(s) 57, 130, 281, 509, 727, 733
HphI GGTGA 3 cut(s) 65, 241, 541
Hpy166II GTNNAC 2 cut(s) 19, 584
Hpy188I TCNGA 3 cut(s) 225, 243, 446
Hpy188III TCNNGA 2 cut(s) 57, 455
Hpy8I GTNNAC 2 cut(s) 19, 584
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 4 cut(s) 172, 220, 571, 632
HpyCH4III ACNGT 2 cut(s) 319, 486
HpyCH4IV ACGT 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 344, 476, 596, 687
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 2 cut(s) 631, 656
KflI GGGWCCC 1 cut(s) 298
Kpn2I TCCGGA 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 6 cut(s) 53, 238, 557, 561, 655, 659
LmnI GCTCC 3 cut(s) 374, 603, 647
Lsp1109I GCAGC 1 cut(s) 618
LweI GCATC 3 cut(s) 325, 457, 559
MaeII ACGT 1 cut(s) 219
MalI GATC 6 cut(s) 55, 240, 559, 563, 657, 661
MboI GATC 6 cut(s) 53, 238, 557, 561, 655, 659
MboII GAAGA 2 cut(s) 70, 586
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 379
MlsI TGGCCA 1 cut(s) 671
MluCI AATT 6 cut(s) 133, 154, 184, 329, 448, 458
MluNI TGGCCA 1 cut(s) 671
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 6 cut(s) 86, 364, 397, 601, 620, 669
Mox20I TGGCCA 1 cut(s) 671
MroI TCCGGA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 671
MseI TTAA 4 cut(s) 42, 462, 497, 534
MslI CAYNNNNRTG 1 cut(s) 651
Msp20I TGGCCA 1 cut(s) 671
MspI CCGG 6 cut(s) 57, 130, 281, 509, 727, 733
MspR9I CCNGG 3 cut(s) 282, 673, 727
Mva1269I GAATGC 1 cut(s) 238
MvaI CCWGG 1 cut(s) 673
MwoI GCNNNNNNNGC 5 cut(s) 311, 344, 476, 596, 687
NciI CCSGG 2 cut(s) 282, 727
NdeII GATC 6 cut(s) 53, 238, 557, 561, 655, 659
NlaIII CATG 2 cut(s) 631, 656
NlaIV GGNNCC 8 cut(s) 55, 61, 299, 300, 376, 507, 643, 731
PctI GAATGC 1 cut(s) 238
PfeI GAWTC 4 cut(s) 4, 351, 385, 512
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 1 cut(s) 608
PpuMI RGGWCCY 1 cut(s) 298
Psp1406I AACGTT 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 671
PspGI CCWGG 1 cut(s) 671
PspN4I GGNNCC 8 cut(s) 55, 61, 299, 300, 376, 507, 643, 731
PspPI GGNCC 4 cut(s) 59, 298, 312, 588
PspPPI RGGWCCY 1 cut(s) 298
PsuI RGATCY 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 651
SaqAI TTAA 4 cut(s) 42, 462, 497, 534
SatI GCNGC 1 cut(s) 607
Sau3AI GATC 6 cut(s) 53, 238, 557, 561, 655, 659
Sau96I GGNCC 4 cut(s) 59, 298, 312, 588
ScrFI CCNGG 3 cut(s) 282, 673, 727
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 3 cut(s) 325, 457, 559
SinI GGWCC 2 cut(s) 59, 298
SmiMI CAYNNNNRTG 1 cut(s) 651
Sse9I AATT 6 cut(s) 133, 154, 184, 329, 448, 458
SsiI CCGC 5 cut(s) 14, 86, 109, 493, 681
StyD4I CCNGG 3 cut(s) 280, 671, 725
StyI CCWWGG 3 cut(s) 22, 256, 717
TaaI ACNGT 2 cut(s) 319, 486
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 560, 658
TasI AATT 6 cut(s) 133, 154, 184, 329, 448, 458
TfiI GAWTC 4 cut(s) 4, 351, 385, 512
Tru1I TTAA 4 cut(s) 42, 462, 497, 534
Tru9I TTAA 4 cut(s) 42, 462, 497, 534
TscAI CASTG 3 cut(s) 322, 395, 491
TseI GCWGC 1 cut(s) 606
TspDTI ATGAA 2 cut(s) 134, 278
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 3 cut(s) 322, 395, 491
VpaK11BI GGWCC 2 cut(s) 59, 298
XapI RAATTY 4 cut(s) 133, 184, 448, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.