Rw1G018070

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000194
Physical Location & Seq
Reverse (-)
39765058 .. 39765690
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018070.1

Sequence Viewer

Length: 633 bp
ATGGCGGGAAGAGAAATACTAATCAAATCAGTGGCCATGGCTGTACCCGCCTATCCTATGTCTTGTTTCAAATTCCCAAAAGGAATTTGTGATGTTATAAATTCTGCTTTGGGGAATTTTTGGTGGGGGTCAACTGATACAGGCTCGAAGGTACACTTGAAGAGTTGGGACTATCTGGGTCTGCCTAAAAATGATGGTGGGATGGGCTTTAGAGATCTGCAGCAGTTCAATATTGCCCTTTTGGCCAAACAATGTTGGCGTTTACTACAAGATCCCTCATCTCTTTGGGCAAGAGTAATGAAAGCAAGATACTTCCCGAATAGGAATTTCCTTCATGCTGTCAAAGGGTATCGAGCTTCTTGGGGGTGGTCTAGCTTGCTAGAAGCTAGAGATTTGATTGTGAATGATTCAAGCTGGCAACTCATCAATGGCTACTCAATAAACATATGGGAGGATAGATGGCTCCCTCCCCCTTATCATGACAAAATCTGCGTCATTGATTCTATACCTCAAAACGCTCCTATAAAGGTTAGCTCTTTGATTGATTGGGACAAGCCACTCGTGGAACTTAGATCAGATATCACATCTCATCCATCCCCAAGAGGTCCAAAAAATCTTGGAAGTTCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

210

Amino Acids

23.81

Weight (kDa)

9.19

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AciI CCGC 2 cut(s) 5, 48
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 2 cut(s) 33, 243
AcsI RAATTY 5 cut(s) 71, 84, 100, 115, 325
AfaI GTAC 2 cut(s) 45, 153
AgsI TTSAA 4 cut(s) 70, 160, 229, 411
AluBI AGCT 5 cut(s) 356, 375, 386, 414, 534
AluI AGCT 5 cut(s) 356, 375, 386, 414, 534
AlwI GGATC 1 cut(s) 266
AoxI GGCC 2 cut(s) 33, 243
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 5 cut(s) 71, 84, 100, 115, 325
ArsI GACNNNNNNTTYG 2 cut(s) 477, 509
AspS9I GGNCC 1 cut(s) 605
AvaII GGWCC 1 cut(s) 605
BalI TGGCCA 2 cut(s) 35, 245
BauI CACGAG 1 cut(s) 560
BbvI GCAGC 1 cut(s) 232
BccI CCATC 4 cut(s) 188, 196, 453, 601
BfaI CTAG 3 cut(s) 372, 380, 387
BfmI CTRYAG 1 cut(s) 218
BglI GCCNNNNNGGC 1 cut(s) 242
BglII AGATCT 1 cut(s) 214
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 605
BmgT120I GGNCC 1 cut(s) 605
BmiI GGNNCC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 207, 589, 593
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 2 cut(s) 35, 245
BslFI GGGAC 2 cut(s) 182, 563
BsmFI GGGAC 2 cut(s) 182, 563
BsnI GGCC 2 cut(s) 35, 245
Bsp143I GATC 3 cut(s) 214, 271, 572
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 2 cut(s) 5, 48
BspANI GGCC 2 cut(s) 35, 245
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 464
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 3 cut(s) 214, 271, 572
BssSI CACGAG 1 cut(s) 560
BssT1I CCWWGG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 560
Bst6I CTCTTC 2 cut(s) 4, 155
BstC8I GCNNGC 2 cut(s) 377, 416
BstDEI CTNAG 1 cut(s) 569
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 207, 589, 593
BstKTI GATC 3 cut(s) 217, 274, 575
BstMBI GATC 3 cut(s) 214, 271, 572
BstMWI GCNNNNNNNGC 2 cut(s) 47, 242
BstSFI CTRYAG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 232
BstX2I RGATCY 2 cut(s) 214, 271
BstYI RGATCY 2 cut(s) 214, 271
BsuRI GGCC 2 cut(s) 35, 245
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 3 cut(s) 207, 589, 593
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 377, 416
CciI TCATGA 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 605
CseI GACGC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 44, 152
CviAII CATG 3 cut(s) 37, 335, 479
CviQI GTAC 2 cut(s) 44, 152
DdeI CTNAG 1 cut(s) 569
DpnI GATC 3 cut(s) 216, 273, 574
DpnII GATC 3 cut(s) 214, 271, 572
EaeI YGGCCR 2 cut(s) 33, 243
Eam1104I CTCTTC 2 cut(s) 4, 155
EarI CTCTTC 2 cut(s) 4, 155
Eco130I CCWWGG 1 cut(s) 36
Eco32I GATATC 1 cut(s) 580
Eco47I GGWCC 1 cut(s) 605
EcoRV GATATC 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 3 cut(s) 40, 338, 482
FaiI YATR 9 cut(s) 38, 59, 98, 336, 446, 448, 480, 506, 524
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 2 cut(s) 182, 563
FatI CATG 3 cut(s) 36, 334, 478
FauI CCCGC 1 cut(s) 55
FauNDI CATATG 1 cut(s) 446
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 3 cut(s) 214, 576, 580
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 3 cut(s) 372, 380, 387
GluI GCNGC 1 cut(s) 221
HaeIII GGCC 2 cut(s) 35, 245
HgaI GACGC 1 cut(s) 481
Hin1II CATG 3 cut(s) 40, 338, 482
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 2 cut(s) 407, 500
Hpy166II GTNNAC 3 cut(s) 132, 154, 263
Hpy188I TCNGA 1 cut(s) 577
Hpy188III TCNNGA 2 cut(s) 316, 479
Hpy8I GTNNAC 3 cut(s) 132, 154, 263
HpyAV CCTTC 2 cut(s) 142, 341
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 242
HpyF3I CTNAG 1 cut(s) 569
Hsp92II CATG 3 cut(s) 40, 338, 482
Kzo9I GATC 3 cut(s) 214, 271, 572
LmnI GCTCC 2 cut(s) 468, 523
LpnPI CCDG 3 cut(s) 126, 161, 400
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 3 cut(s) 372, 380, 387
MalI GATC 3 cut(s) 216, 273, 574
MboI GATC 3 cut(s) 214, 271, 572
MboII GAAGA 2 cut(s) 21, 172
MfeI CAATTG 1 cut(s) 628
MflI RGATCY 2 cut(s) 214, 271
MlsI TGGCCA 2 cut(s) 35, 245
MluCI AATT 6 cut(s) 71, 84, 100, 115, 325, 628
MluNI TGGCCA 2 cut(s) 35, 245
MnlI CCTC 5 cut(s) 286, 445, 477, 519, 596
Mox20I TGGCCA 2 cut(s) 35, 245
MscI TGGCCA 2 cut(s) 35, 245
Msp20I TGGCCA 2 cut(s) 35, 245
MunI CAATTG 1 cut(s) 628
MwoI GCNNNNNNNGC 2 cut(s) 47, 242
NcoI CCATGG 1 cut(s) 36
NdeI CATATG 1 cut(s) 446
NdeII GATC 3 cut(s) 214, 271, 572
NlaIII CATG 3 cut(s) 40, 338, 482
NlaIV GGNNCC 1 cut(s) 464
PagI TCATGA 1 cut(s) 478
PfeI GAWTC 2 cut(s) 407, 500
PkrI GCNGC 1 cut(s) 222
PsiI TTATAA 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 464
PspPI GGNCC 1 cut(s) 605
PstI CTGCAG 1 cut(s) 222
PsuI RGATCY 2 cut(s) 214, 271
RsaI GTAC 2 cut(s) 45, 153
RsaNI GTAC 2 cut(s) 44, 152
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 3 cut(s) 214, 271, 572
Sau96I GGNCC 1 cut(s) 605
SetI ASST 9 cut(s) 153, 358, 377, 388, 416, 511, 531, 536, 607
SfcI CTRYAG 1 cut(s) 218
SinI GGWCC 1 cut(s) 605
Sse9I AATT 6 cut(s) 71, 84, 100, 115, 325, 628
SsiI CCGC 2 cut(s) 5, 48
SspI AATATT 1 cut(s) 232
SspMI CTAG 3 cut(s) 372, 380, 387
StyI CCWWGG 1 cut(s) 36
TaqI TCGA 2 cut(s) 146, 352
TasI AATT 6 cut(s) 71, 84, 100, 115, 325, 628
TfiI GAWTC 2 cut(s) 407, 500
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 314, 323
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 605
XapI RAATTY 5 cut(s) 71, 84, 100, 115, 325
XspI CTAG 3 cut(s) 372, 380, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.