Rw2G050800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000194
Physical Location & Seq
Forward (+)
78541223 .. 78541594
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050800.1

Sequence Viewer

Length: 372 bp
ATGACACATTCATCAAGAAATTCTATTTTATTGCAACACTCTCATTGGTCTCATACTATTAATCCATGTGTCTGGAAGGAGATTTGGAAGATCAAGGCATTACCTAAAGTCCCGCATTTTCTGTGGAGGGCCTGTTCTAATGTACTACCTATAATGGCTAACCTGTATACAAAAAAGGTGACTGCTTCTCCCTTATATCAAATCTGTAAAGCTTTACCAGAGAATGTGGAGCATTTGCGATTTCAATGCCCTTGGGTGTCTTATGTTCGGTTTGGCCTTCCTCTGAACTATAAGGTAAACCTAGCCTCAGTCACAAGTCACAACTGTGGATCAGTGGCTATGGTCTATTATTTCTCTGGGTTAAGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

123

Amino Acids

14.17

Weight (kDa)

9.48

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 20 - 87 5.4e-12 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 167
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 337
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 1 cut(s) 144
AgsI TTSAA 1 cut(s) 245
AleI CACNNNNGTG 1 cut(s) 324
AloI GAACNNNNNNTCC 2 cut(s) 118, 150
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 1 cut(s) 337
AoxI GGCC 2 cut(s) 129, 274
ApoI RAATTY 1 cut(s) 19
AseI ATTAAT 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 251
BsaXI ACNNNNNCTCC 4 cut(s) 118, 148, 172, 202
BseDI CCNNGG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 321
BshFI GGCC 2 cut(s) 131, 276
BslFI GGGAC 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 2 cut(s) 131, 276
Bso31I GGTCTC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 90, 329
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 131, 276
BspCNI CTCAG 1 cut(s) 320
BspPI GGATC 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 2 cut(s) 90, 329
BssNAI GTATAC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 251
Bst1107I GTATAC 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 307
BstKTI GATC 2 cut(s) 93, 332
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 2 cut(s) 90, 329
BstXI CCANNNNNNTGG 1 cut(s) 72
BstZ17I GTATAC 1 cut(s) 168
BsuRI GGCC 2 cut(s) 131, 276
BtsIMutI CAGTG 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 143
CviAII CATG 1 cut(s) 66
CviJI RGCY 6 cut(s) 131, 158, 212, 276, 305, 338
CviKI_1 RGCY 6 cut(s) 131, 158, 212, 276, 305, 338
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 1 cut(s) 307
DpnI GATC 2 cut(s) 92, 331
DpnII GATC 2 cut(s) 90, 329
Eco130I CCWWGG 1 cut(s) 251
Eco31I GGTCTC 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 1 cut(s) 69
FaiI YATR 8 cut(s) 54, 67, 152, 168, 196, 264, 291, 341
FaqI GGGAC 1 cut(s) 95
FatI CATG 1 cut(s) 65
FauI CCCGC 1 cut(s) 120
FblI GTMKAC 1 cut(s) 167
FspBI CTAG 1 cut(s) 302
HaeIII GGCC 2 cut(s) 131, 276
Hin1II CATG 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 210
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 168, 298
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 2 cut(s) 15, 73
Hpy8I GTNNAC 2 cut(s) 168, 298
HpyAV CCTTC 2 cut(s) 70, 287
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4V TGCA 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 307
Hsp92II CATG 1 cut(s) 69
Kzo9I GATC 2 cut(s) 90, 329
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 5 cut(s) 58, 145, 176, 231, 342
MaeI CTAG 1 cut(s) 302
MaeIII GTNAC 3 cut(s) 178, 310, 317
MalI GATC 2 cut(s) 92, 331
MboI GATC 2 cut(s) 90, 329
MboII GAAGA 1 cut(s) 100
MluCI AATT 1 cut(s) 19
MnlI CCTC 3 cut(s) 120, 291, 316
MseI TTAA 2 cut(s) 60, 362
MslI CAYNNNNRTG 1 cut(s) 324
NdeII GATC 2 cut(s) 90, 329
NlaIII CATG 1 cut(s) 69
NmuCI GTSAC 3 cut(s) 178, 310, 317
OliI CACNNNNGTG 1 cut(s) 324
PshBI ATTAAT 1 cut(s) 60
PspPI GGNCC 1 cut(s) 129
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 2 cut(s) 60, 362
Sau3AI GATC 2 cut(s) 90, 329
Sau96I GGNCC 1 cut(s) 129
SetI ASST 7 cut(s) 106, 151, 165, 180, 214, 297, 303
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 1 cut(s) 19
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 302
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 326
TasI AATT 1 cut(s) 19
TatI WGTACW 1 cut(s) 142
Tru1I TTAA 2 cut(s) 60, 362
Tru9I TTAA 2 cut(s) 60, 362
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 3 cut(s) 178, 310, 317
Tsp45I GTSAC 3 cut(s) 178, 310, 317
TspRI CASTG 1 cut(s) 339
VspI ATTAAT 1 cut(s) 60
XapI RAATTY 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.