FvH4_3g32111

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000194
Physical Location & Seq
Reverse (-)
27372522 .. 27375219
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32111.t1

Sequence Viewer

Length: 2250 bp
ATGGGGCCGAGAAACCTAGACAATTGCCTATCCCAAATTGAGCCTTCAATCTCTGATTCCCAAAACTCAGCTCTCACTTGCCCTTTTTCTGTGGAGGAAGTCCAAAGAGCAGTGAAACAGATGGGTAATTTCAAGGCCCCCGGGCCGAATGGGTTCCCAGGGAGGTTCTATCACCAGTATTGGGAGGTAGTTAGAGACAATATTAATTATGGTGTGGCTAGATTTCAGAGGGGAGAGGCCAATCTCAGTTCCATTAGAAGAACAAACATTGTTCTGATCCCTAAAATTCCCCTTCCAGAGACAAATGCTTTTGTTCTTGGGAGACAAATTCAAGATAATCTCATTGTGGCACATGAGGTCTATCATTATCTGAAATTGAAGAAGGCGAGCTCAAATCATGAGATGGCGTTGAAGTTGGACATGAATAAGGCGTATGACCGTGTGGAGTGGGATTTCCTTGAAGCAACTCTTTTGAAGTTCGGTTTTGAGCCGAGGTGGGTCAAATTGGTCATGCAAGCTAATGCCCCGAATTGTCTTGCCCTGAAAGAGATAATCGAAGTGTTTTGCTCGACTTCAGGTCAGTCTATAAATTATGAAAAGTCTTCAGTTTTCTTCTCTTCTAATACTCTAGTGAATACTCGGGAAGCAATAGCAGAGGTGTTATCGATTCCAGTAAATGAGAATCTAGGGGTGTATCTAGGGCTTCCCACTCTCTGGGGAAGTTCCAAGCGAAAGGCCCTTGCTTATGTTAAAGAGCGTTTAAGACAGAAATTAGAGGGTACTTTGTGCAAGGCTATCAACTCGGACATAGCTAACTTTTGGTGGGGGTACTCAGGCTCCAAACCGAAAATTCACTTCAGGTCCTGGGATTCTGTTTGCAAGAGCAAATCTGCTGGGGGTATTGGTTTCAAGGACTTGGCTGTTTTCAACAAGGCTTTCCTAGGAAAGCAATGCTGGAGACTTATTAAGAACCCTAACTCTCTTTGGTGCCGTGTTCTAAAAGGAAGATATTTTGAGAATTCAAATTTTGTGCATGCAAAGAAAGGGTCGCGTCCTTCTTGGGTTTGGAATAGCCTTTTAGCTGGCCAAGACACAATCACCTCAAATGCCTTCTGGCAAGTAAGGAACAGGCAGTCAATTGAAGTATGGAAAGATCGTTGGGTGCCGAACTCTATTGGGGGTTCAATCATTCCGATTGACACTTCAAACAGGTTTACGCCACTCTTGGTAGCAGAGGTGATTGATGAGAATAGGGAATGGCAGATTGATCATCTTAAACCCTTCTTAAGGGATTCAGATTTCAACTCAATTAAGGCCATCCCCATTGGAGCTGCTTCAGAAAGAGATGTTCTTGTTTGGCCTCATTCCAAGAGCGAGAACTATTCTGTCAGAAGCGGTTACTACAAAACTCTCTCAGCTTGGGTTCCTAAAGCTTCAATCAAGGCATCCACTTCTCACAAGGTTGATCCTCATGTCTGGAAGATAGCCTGGGGATCCAAGCTGGCACCAAAGGTTTCAAACTTCACTTGGAAAGCCTTGGCTAACGCTCTTCCAACTTGTGAGAATCTTCACAAGAGGAATATAGGGAACTCCCCCTTATGCAAAATCTGTGGTCTCTTTCCAGAAACTATAGAACATTGTCTTCTTCTTTGTGAATGGACAGAGCTGGTTTGGTTTGGTAGCTTGGCAGGCTATTCCCTAAATAAGCAAAGTATCACTACCTTGGAGAAGTGGTTATTGGAGACTGATAAAAAGGGAGCTTTCTTGGCCGATGATAAACAATTCTGTTTGCAGCTTATTCTATGGCACCTTTGGGAGATTTGGAAGCACCGTTATGAGATTGTGATGAGTCATGGAAAGCCGAATCCTAAAGTGGTCATCGAGAAGATAAAACACAATTTTGGGGAGTGGGGTGCAGCTCAGGTGTCTAATCTTAAGTCCCTTAATATGACTTCTTCTCAAAGTGCTAGCAACGACTGGTGTCCCCCTCCGAATCATGTTGTAAAGGTTAACATGGATGGAGCTTGGGATGATCAGACAAAGATTAGCGGAATTGGGATTGTAATTAGGAATCATAGAGGAGCGTGCCTTGCTGGGGCAAGCCTTTATGGGAAGTACAATTCAACTATTGAAATGGAGGCGGAGGCAGTGGTGCGGGGACTTCAGCTTGCAAAGCGCCTAAGGTTCCAATCTATTGTGGTTGAGGGGGATTGCTATGAGGTGTTCTCTGCCATCAAGTCCTCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

750

Amino Acids

84.85

Weight (kDa)

9.26

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 483 - 558 5.2e-16 zinc-binding in reverse transcriptase
RVT_3 PF13456 671 - 747 5.4e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 987, 1162, 1504, 1806
AccB7I CCANNNNNTGG 1 cut(s) 714
AccII CGCG 1 cut(s) 1051
AciI CCGC 4 cut(s) 1395, 2049, 2141, 2155
AclWI GGATC 4 cut(s) 271, 1460, 1488, 1501
AcoI YGGCCR 2 cut(s) 1084, 1767
AcsI RAATTY 5 cut(s) 285, 327, 849, 1018, 1024
AcuI CTGAAG 5 cut(s) 558, 588, 841, 1320, 2147
AfaI GTAC 3 cut(s) 781, 830, 2117
AfiI CCNNNNNNNGG 4 cut(s) 181, 714, 1287, 2095
AflII CTTAAG 2 cut(s) 1285, 1934
AhdI GACNNNNNGTC 1 cut(s) 576
AjnI CCWGG 3 cut(s) 157, 863, 1487
AjuI GAANNNNNNNTTGG 2 cut(s) 1721, 1753
Alw21I GWGCWC 1 cut(s) 392
Alw26I GTCTC 6 cut(s) 189, 293, 316, 952, 1619, 1736
AlwI GGATC 4 cut(s) 271, 1460, 1488, 1501
AlwNI CAGNNNCTG 1 cut(s) 864
Ama87I CYCGRG 2 cut(s) 140, 639
AoxI GGCC 9 cut(s) 5, 135, 143, 237, 735, 1084, 1314, 1358, 1767
ApeKI GCWGC 3 cut(s) 1331, 1792, 1916
ApoI RAATTY 5 cut(s) 285, 327, 849, 1018, 1024
ArsI GACNNNNNNTTYG 2 cut(s) 1031, 1063
AseI ATTAAT 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 152
AspA2I CCTAGG 1 cut(s) 940
AspLEI GCGC 1 cut(s) 2178
AspS9I GGNCC 5 cut(s) 5, 136, 143, 736, 861
AsuC2I CCSGG 2 cut(s) 141, 142
AsuHPI GGTGA 3 cut(s) 164, 1090, 1249
AsuNHI GCTAGC 1 cut(s) 1967
AvaI CYCGRG 2 cut(s) 140, 639
AvaII GGWCC 1 cut(s) 861
AvrII CCTAGG 1 cut(s) 940
AxyI CCTNAGG 1 cut(s) 2180
BalI TGGCCA 1 cut(s) 1086
BamHI GGATCC 1 cut(s) 1493
BanI GGYRCC 4 cut(s) 987, 1162, 1504, 1806
BanII GRGCYC 1 cut(s) 392
BbsI GAAGAC 2 cut(s) 594, 1634
Bbv12I GWGCWC 1 cut(s) 392
BbvI GCAGC 3 cut(s) 1318, 1804, 1928
BccI CCATC 5 cut(s) 115, 397, 1325, 2012, 2240
BceAI ACGGC 1 cut(s) 975
BciT130I CCWGG 3 cut(s) 159, 865, 1489
BclI TGATCA 2 cut(s) 1267, 2032
BcnI CCSGG 2 cut(s) 141, 142
BcoDI GTCTC 6 cut(s) 189, 293, 316, 952, 1619, 1736
BfaI CTAG 7 cut(s) 17, 219, 629, 686, 698, 941, 1968
BfmI CTRYAG 1 cut(s) 1629
BfoI RGCGCY 1 cut(s) 2179
BfrI CTTAAG 2 cut(s) 1285, 1934
BisI GCNGC 3 cut(s) 1332, 1793, 1917
BlnI CCTAGG 1 cut(s) 940
BlsI GCNGC 3 cut(s) 1333, 1794, 1918
Bme1390I CCNGG 5 cut(s) 141, 142, 159, 865, 1489
Bme18I GGWCC 1 cut(s) 861
BmeRI GACNNNNNGTC 1 cut(s) 576
BmeT110I CYCGRG 2 cut(s) 140, 639
BmgT120I GGNCC 5 cut(s) 5, 136, 143, 736, 861
BmrFI CCNGG 5 cut(s) 141, 142, 159, 865, 1489
BmsI GCATC 1 cut(s) 1454
BmtI GCTAGC 1 cut(s) 1971
BoxI GACNNNNGTC 1 cut(s) 1980
BpiI GAAGAC 2 cut(s) 594, 1634
BplI GAGNNNNNCTC 2 cut(s) 2210, 2242
BpmI CTGGAG 1 cut(s) 976
Bpu10I CCTNAGC 1 cut(s) 1920
BpuMI CCSGG 2 cut(s) 141, 142
Bsa29I ATCGAT 1 cut(s) 665
BsaI GGTCTC 1 cut(s) 1619
BsaXI ACNNNNNCTCC 4 cut(s) 821, 851, 1718, 1748
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 714, 1287, 2095
Bse1I ACTGG 3 cut(s) 175, 671, 1982
Bse21I CCTNAGG 1 cut(s) 2180
Bse3DI GCAATG 1 cut(s) 956
BseBI CCWGG 3 cut(s) 159, 865, 1489
BseCI ATCGAT 1 cut(s) 665
BseGI GGATG 4 cut(s) 1317, 1445, 2023, 2035
BseLI CCNNNNNNNGG 4 cut(s) 181, 714, 1287, 2095
BseMI GCAATG 1 cut(s) 956
BseMII CTCAG 5 cut(s) 81, 259, 846, 1428, 1934
BseNI ACTGG 3 cut(s) 175, 671, 1982
BseRI GAGGAG 1 cut(s) 2094
BseXI GCAGC 3 cut(s) 1318, 1804, 1928
BseYI CCCAGC 2 cut(s) 893, 2093
BsgI GTGCAG 1 cut(s) 1935
Bsh1236I CGCG 1 cut(s) 1051
BshFI GGCC 9 cut(s) 7, 137, 145, 239, 737, 1086, 1316, 1360, 1769
BshNI GGYRCC 4 cut(s) 987, 1162, 1504, 1806
BshVI ATCGAT 1 cut(s) 665
BsiHKAI GWGCWC 1 cut(s) 392
BsiHKCI CYCGRG 2 cut(s) 140, 639
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 3 cut(s) 1924, 1968, 2172
BslI CCNNNNNNNGG 4 cut(s) 181, 714, 1287, 2095
BsmAI GTCTC 6 cut(s) 189, 293, 316, 952, 1619, 1736
BsmFI GGGAC 3 cut(s) 1924, 1968, 2172
BsnI GGCC 9 cut(s) 7, 137, 145, 239, 737, 1086, 1316, 1360, 1769
Bso31I GGTCTC 1 cut(s) 1619
BsoBI CYCGRG 2 cut(s) 140, 639
Bsp1286I GDGCHC 1 cut(s) 392
Bsp143I GATC 6 cut(s) 276, 1153, 1267, 1465, 1493, 2032
BspACI CCGC 4 cut(s) 1395, 2049, 2141, 2155
BspANI GGCC 9 cut(s) 7, 137, 145, 239, 737, 1086, 1316, 1360, 1769
BspCNI CTCAG 5 cut(s) 80, 258, 845, 1427, 1933
BspDI ATCGAT 1 cut(s) 665
BspFNI CGCG 1 cut(s) 1051
BspHI TCATGA 1 cut(s) 397
BspOI GCTAGC 1 cut(s) 1971
BspPI GGATC 4 cut(s) 271, 1460, 1488, 1501
BspQI GCTCTTC 1 cut(s) 1554
BspT107I GGYRCC 4 cut(s) 987, 1162, 1504, 1806
BspTI CTTAAG 2 cut(s) 1285, 1934
BspTNI GGTCTC 1 cut(s) 1619
BsrDI GCAATG 1 cut(s) 956
BsrI ACTGG 3 cut(s) 175, 671, 1982
BssMI GATC 6 cut(s) 276, 1153, 1267, 1465, 1493, 2032
BssT1I CCWWGG 3 cut(s) 940, 1536, 1722
Bst2UI CCWGG 3 cut(s) 159, 865, 1489
Bst4CI ACNGT 2 cut(s) 440, 1832
Bst6I CTCTTC 2 cut(s) 622, 1554
BstAFI CTTAAG 2 cut(s) 1285, 1934
BstDEI CTNAG 6 cut(s) 67, 245, 832, 1414, 1920, 2180
BstENI CCTNNNNNAGG 1 cut(s) 1285
BstF5I GGATG 4 cut(s) 1317, 1445, 2023, 2035
BstFNI CGCG 1 cut(s) 1051
BstH2I RGCGCY 1 cut(s) 2179
BstHHI GCGC 1 cut(s) 2178
BstKTI GATC 6 cut(s) 279, 1156, 1270, 1468, 1496, 2035
BstMAI GTCTC 6 cut(s) 189, 293, 316, 952, 1619, 1736
BstMBI GATC 6 cut(s) 276, 1153, 1267, 1465, 1493, 2032
BstMWI GCNNNNNNNGC 4 cut(s) 1689, 1766, 2090, 2173
BstNI CCWGG 3 cut(s) 159, 865, 1489
BstNSI RCATGY 1 cut(s) 1037
BstPAI GACNNNNGTC 1 cut(s) 1980
BstSCI CCNGG 5 cut(s) 139, 140, 157, 863, 1487
BstSFI CTRYAG 1 cut(s) 1629
BstUI CGCG 1 cut(s) 1051
BstV1I GCAGC 3 cut(s) 1318, 1804, 1928
BstV2I GAAGAC 2 cut(s) 594, 1634
BstX2I RGATCY 1 cut(s) 1493
BstYI RGATCY 1 cut(s) 1493
Bsu15I ATCGAT 1 cut(s) 665
Bsu36I CCTNAGG 1 cut(s) 2180
BsuRI GGCC 9 cut(s) 7, 137, 145, 239, 737, 1086, 1316, 1360, 1769
BsuTUI ATCGAT 1 cut(s) 665
BtsCI GGATG 4 cut(s) 1317, 1445, 2023, 2035
BtsI GCAGTG 2 cut(s) 117, 2154
BtsIMutI CAGTG 2 cut(s) 117, 2154
CaiI CAGNNNCTG 1 cut(s) 864
CciI TCATGA 1 cut(s) 397
CfoI GCGC 1 cut(s) 2178
Cfr13I GGNCC 5 cut(s) 5, 136, 143, 736, 861
Cfr9I CCCGGG 1 cut(s) 140
ClaI ATCGAT 1 cut(s) 665
CseI GACGC 1 cut(s) 1040
Csp6I GTAC 3 cut(s) 780, 829, 2116
CspCI CAANNNNNGTGG 2 cut(s) 1591, 1626
CviAII CATG 9 cut(s) 353, 398, 421, 511, 1034, 1472, 1853, 1997, 2014
CviQI GTAC 3 cut(s) 780, 829, 2116
DdeI CTNAG 6 cut(s) 67, 245, 832, 1414, 1920, 2180
DpnI GATC 6 cut(s) 278, 1155, 1269, 1467, 1495, 2034
DpnII GATC 6 cut(s) 276, 1153, 1267, 1465, 1493, 2032
DriI GACNNNNNGTC 1 cut(s) 576
EaeI YGGCCR 2 cut(s) 1084, 1767
Eam1104I CTCTTC 2 cut(s) 622, 1554
Eam1105I GACNNNNNGTC 1 cut(s) 576
EarI CTCTTC 2 cut(s) 622, 1554
EciI GGCGGA 1 cut(s) 2156
Ecl136II GAGCTC 1 cut(s) 390
Eco130I CCWWGG 3 cut(s) 940, 1536, 1722
Eco24I GRGCYC 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 1619
Eco47I GGWCC 1 cut(s) 861
Eco53kI GAGCTC 1 cut(s) 390
Eco57I CTGAAG 5 cut(s) 558, 588, 841, 1320, 2147
Eco81I CCTNAGG 1 cut(s) 2180
Eco88I CYCGRG 2 cut(s) 140, 639
EcoICRI GAGCTC 1 cut(s) 390
EcoNI CCTNNNNNAGG 1 cut(s) 1285
EcoO109I RGGNCCY 3 cut(s) 136, 736, 861
EcoRI GAATTC 1 cut(s) 1018
EcoRII CCWGG 3 cut(s) 157, 863, 1487
EcoT14I CCWWGG 3 cut(s) 940, 1536, 1722
EcoT38I GRGCYC 1 cut(s) 392
ErhI CCWWGG 3 cut(s) 940, 1536, 1722
FaeI CATG 9 cut(s) 356, 401, 424, 514, 1037, 1475, 1856, 2000, 2017
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 3 cut(s) 1924, 1968, 2172
FatI CATG 9 cut(s) 352, 397, 420, 510, 1033, 1471, 1852, 1996, 2013
FauI CCCGC 1 cut(s) 2148
FbaI TGATCA 2 cut(s) 1267, 2032
Fnu4HI GCNGC 3 cut(s) 1332, 1793, 1917
FokI GGATG 4 cut(s) 1304, 1432, 2030, 2042
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 3 cut(s) 1332, 1793, 1917
FspBI CTAG 7 cut(s) 17, 219, 629, 686, 698, 941, 1968
GlaI GCGC 1 cut(s) 2177
GluI GCNGC 3 cut(s) 1332, 1793, 1917
GsaI CCCAGC 2 cut(s) 897, 2097
GsuI CTGGAG 1 cut(s) 976
HaeII RGCGCY 1 cut(s) 2179
HaeIII GGCC 9 cut(s) 7, 137, 145, 239, 737, 1086, 1316, 1360, 1769
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 1040
HhaI GCGC 1 cut(s) 2178
Hin1II CATG 9 cut(s) 356, 401, 424, 514, 1037, 1475, 1856, 2000, 2017
Hin6I GCGC 1 cut(s) 2176
HinP1I GCGC 1 cut(s) 2176
HincII GTYRAC 1 cut(s) 2011
HindII GTYRAC 1 cut(s) 2011
HindIII AAGCTT 1 cut(s) 1431
HpaI GTTAAC 1 cut(s) 2011
HpaII CCGG 1 cut(s) 141
HphI GGTGA 3 cut(s) 164, 1090, 1249
Hpy166II GTNNAC 2 cut(s) 1215, 2011
Hpy188III TCNNGA 7 cut(s) 296, 332, 398, 641, 1477, 1622, 1882
Hpy8I GTNNAC 2 cut(s) 1215, 2011
HpyAV CCTTC 6 cut(s) 54, 302, 376, 1065, 1120, 1291
HpyCH4III ACNGT 2 cut(s) 440, 1832
HpyCH4V TGCA 9 cut(s) 514, 789, 879, 1033, 1037, 1602, 1792, 1916, 2171
HpyF10VI GCNNNNNNNGC 4 cut(s) 1689, 1766, 2090, 2173
HpyF3I CTNAG 6 cut(s) 67, 245, 832, 1414, 1920, 2180
Hsp92II CATG 9 cut(s) 356, 401, 424, 514, 1037, 1475, 1856, 2000, 2017
HspAI GCGC 1 cut(s) 2176
Ksp22I TGATCA 2 cut(s) 1267, 2032
KspAI GTTAAC 1 cut(s) 2011
Kzo9I GATC 6 cut(s) 276, 1153, 1267, 1465, 1493, 2032
LguI GCTCTTC 1 cut(s) 1554
LmnI GCTCC 5 cut(s) 842, 1328, 1757, 2021, 2081
Lsp1109I GCAGC 3 cut(s) 1318, 1804, 1928
LweI GCATC 1 cut(s) 1454
MaeI CTAG 7 cut(s) 17, 219, 629, 686, 698, 941, 1968
MaeIII GTNAC 1 cut(s) 1397
MalI GATC 6 cut(s) 278, 1155, 1269, 1467, 1495, 2034
MboI GATC 6 cut(s) 276, 1153, 1267, 1465, 1493, 2032
MfeI CAATTG 2 cut(s) 22, 1137
MflI RGATCY 1 cut(s) 1493
MhlI GDGCHC 1 cut(s) 392
MlsI TGGCCA 1 cut(s) 1086
MluNI TGGCCA 1 cut(s) 1086
MlyI GAGTC 1 cut(s) 1858
MmeI TCCRAC 2 cut(s) 396, 1577
Mox20I TGGCCA 1 cut(s) 1086
MroXI GAANNNNTTC 1 cut(s) 152
MscI TGGCCA 1 cut(s) 1086
MslI CAYNNNNRTG 1 cut(s) 1833
Msp20I TGGCCA 1 cut(s) 1086
MspCI CTTAAG 2 cut(s) 1285, 1934
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 5 cut(s) 141, 142, 159, 865, 1489
MunI CAATTG 2 cut(s) 22, 1137
MvaI CCWGG 3 cut(s) 159, 865, 1489
MvnI CGCG 1 cut(s) 1051
MwoI GCNNNNNNNGC 4 cut(s) 1689, 1766, 2090, 2173
NciI CCSGG 2 cut(s) 141, 142
NdeII GATC 6 cut(s) 276, 1153, 1267, 1465, 1493, 2032
NheI GCTAGC 1 cut(s) 1967
NlaIII CATG 9 cut(s) 356, 401, 424, 514, 1037, 1475, 1856, 2000, 2017
NmeAIII GCCGAG 2 cut(s) 33, 516
NspI RCATGY 1 cut(s) 1037
PaeI GCATGC 1 cut(s) 1037
PagI TCATGA 1 cut(s) 397
PasI CCCWGGG 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 1554
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 9 cut(s) 56, 667, 682, 869, 1292, 1564, 1864, 1993, 2071
PflMI CCANNNNNTGG 1 cut(s) 714
PkrI GCNGC 3 cut(s) 1333, 1794, 1918
PleI GAGTC 1 cut(s) 1857
PpsI GAGTC 1 cut(s) 1857
PpuMI RGGWCCY 1 cut(s) 861
PshAI GACNNNNGTC 1 cut(s) 1980
PshBI ATTAAT 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 861
Psp6I CCWGG 3 cut(s) 157, 863, 1487
PspFI CCCAGC 2 cut(s) 893, 2093
PspGI CCWGG 3 cut(s) 157, 863, 1487
PspPI GGNCC 5 cut(s) 5, 136, 143, 736, 861
PspPPI RGGWCCY 1 cut(s) 861
PstNI CAGNNNCTG 1 cut(s) 864
PsuI RGATCY 1 cut(s) 1493
RsaI GTAC 3 cut(s) 781, 830, 2117
RsaNI GTAC 3 cut(s) 780, 829, 2116
RseI CAYNNNNRTG 1 cut(s) 1833
SacI GAGCTC 1 cut(s) 392
SapI GCTCTTC 1 cut(s) 1554
SatI GCNGC 3 cut(s) 1332, 1793, 1917
Sau3AI GATC 6 cut(s) 276, 1153, 1267, 1465, 1493, 2032
Sau96I GGNCC 5 cut(s) 5, 136, 143, 736, 861
SchI GAGTC 1 cut(s) 1858
ScrFI CCNGG 5 cut(s) 141, 142, 159, 865, 1489
SduI GDGCHC 1 cut(s) 392
SfaNI GCATC 1 cut(s) 1454
SfcI CTRYAG 1 cut(s) 1629
SinI GGWCC 1 cut(s) 861
SmaI CCCGGG 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 1833
SmlI CTYRAG 2 cut(s) 1285, 1934
SmoI CTYRAG 2 cut(s) 1285, 1934
SphI GCATGC 1 cut(s) 1037
SsiI CCGC 4 cut(s) 1395, 2049, 2141, 2155
SspI AATATT 1 cut(s) 202
SspMI CTAG 7 cut(s) 17, 219, 629, 686, 698, 941, 1968
SstI GAGCTC 1 cut(s) 392
StyD4I CCNGG 5 cut(s) 139, 140, 157, 863, 1487
StyI CCWWGG 3 cut(s) 940, 1536, 1722
TaaI ACNGT 2 cut(s) 440, 1832
TaqI TCGA 4 cut(s) 555, 569, 665, 1881
TatI WGTACW 1 cut(s) 2115
TfiI GAWTC 9 cut(s) 56, 667, 682, 869, 1292, 1564, 1864, 1993, 2071
TscAI CASTG 2 cut(s) 117, 2154
TseI GCWGC 3 cut(s) 1331, 1792, 1916
TspDTI ATGAA 2 cut(s) 437, 609
TspMI CCCGGG 1 cut(s) 140
TspRI CASTG 2 cut(s) 117, 2154
Van91I CCANNNNNTGG 1 cut(s) 714
Vha464I CTTAAG 2 cut(s) 1285, 1934
VpaK11BI GGWCC 1 cut(s) 861
VspI ATTAAT 1 cut(s) 204
XagI CCTNNNNNAGG 1 cut(s) 1285
XapI RAATTY 5 cut(s) 285, 327, 849, 1018, 1024
XceI RCATGY 1 cut(s) 1037
XmaI CCCGGG 1 cut(s) 140
XmaJI CCTAGG 1 cut(s) 940
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 7 cut(s) 17, 219, 629, 686, 698, 941, 1968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.