Rmu_sc0023291.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023291.1
OG0000194
Physical Location & Seq
Reverse (-)
2 .. 466
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023291.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
atggggggtaaggtgcattggttgagttgggaaaagcttggattgcctaaggaggagggcggtatgggtttcaggtgtctgcgagatttcaatttagccctccttgccaaagtagggtggagaattattcaacaaccagaagctttatgggttcaagtgctcaagggattatattttcctgattgtgatttcttctcagcttctaaaggccccagagcttcgtgggcttggagtagcattctggagggaagaaatttattaactgattgtgctttgtggcaagtactcaatggggagtccattagtacttggaaagataaatggattccagggattttaggtgggagactgcatgctgctcatctgtatgcttctgagtttgatccttttcagagggttgcagacttggttgattggtcttcaacttcttggaatctggatcccattgctcagcatttgacacct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

155

Amino Acids

17.57

Weight (kDa)

6.4

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AclWI GGATC 3 cut(s) 377, 434, 447
AcsI RAATTY 1 cut(s) 253
AfaI GTAC 2 cut(s) 285, 307
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 4 cut(s) 91, 131, 155, 423
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 4 cut(s) 37, 143, 200, 218
AluI AGCT 4 cut(s) 37, 143, 200, 218
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 3 cut(s) 377, 434, 447
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 48
BamHI GGATCC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 340
BisI GCNGC 1 cut(s) 357
BlpI GCTNAGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 358
BmcAI AGTACT 2 cut(s) 285, 307
Bme1390I CCNGG 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 2 cut(s) 211, 441
BmrFI CCNGG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse21I CCTNAGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 3 cut(s) 210, 366, 464
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 343
BshFI GGCC 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 340
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 382, 439
Bsp1720I GCTNAGC 1 cut(s) 450
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 3 cut(s) 209, 367, 463
BspLI GGNNCC 2 cut(s) 211, 441
BspPI GGATC 3 cut(s) 377, 434, 447
BsrDI GCAATG 1 cut(s) 444
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 2 cut(s) 382, 439
Bst2UI CCWGG 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 4 cut(s) 48, 196, 375, 450
BstKTI GATC 2 cut(s) 385, 442
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 2 cut(s) 382, 439
BstMWI GCNNNNNNNGC 3 cut(s) 43, 104, 224
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
Bsu36I CCTNAGG 1 cut(s) 48
BsuRI GGCC 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 284, 306
CviAII CATG 1 cut(s) 353
CviJI RGCY 7 cut(s) 37, 98, 143, 200, 210, 218, 227
CviKI_1 RGCY 7 cut(s) 37, 98, 143, 200, 210, 218, 227
CviQI GTAC 2 cut(s) 284, 306
DdeI CTNAG 4 cut(s) 48, 196, 375, 450
DpnI GATC 2 cut(s) 384, 441
DpnII GATC 2 cut(s) 382, 439
Eco81I CCTNAGG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 328
FaeI CATG 1 cut(s) 356
FaiI YATR 5 cut(s) 65, 148, 172, 354, 369
FatI CATG 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 357
GluI GCNGC 1 cut(s) 357
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 1 cut(s) 210
Hin1II CATG 1 cut(s) 356
HindIII AAGCTT 2 cut(s) 35, 141
HinfI GANTC 3 cut(s) 296, 325, 433
Hpy188I TCNGA 2 cut(s) 376, 393
Hpy188III TCNNGA 3 cut(s) 179, 242, 437
HpyCH4V TGCA 3 cut(s) 16, 352, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 104, 224
HpyF3I CTNAG 4 cut(s) 48, 196, 375, 450
Hsp92II CATG 1 cut(s) 356
Kzo9I GATC 2 cut(s) 382, 439
LpnPI CCDG 8 cut(s) 58, 150, 192, 226, 227, 315, 342, 422
Lsp1109I GCAGC 1 cut(s) 343
MalI GATC 2 cut(s) 384, 441
MboI GATC 2 cut(s) 382, 439
MboII GAAGA 3 cut(s) 184, 261, 411
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 3 cut(s) 91, 123, 253
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 5 cut(s) 46, 49, 110, 238, 387
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 237
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 43, 104, 224
NdeII GATC 2 cut(s) 382, 439
NlaIII CATG 1 cut(s) 356
NlaIV GGNNCC 2 cut(s) 211, 441
NspI RCATGY 1 cut(s) 356
PaeI GCATGC 1 cut(s) 356
PctI GAATGC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 325, 433
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 211, 441
PspPI GGNCC 1 cut(s) 209
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 2 cut(s) 285, 307
RsaNI GTAC 2 cut(s) 284, 306
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 2 cut(s) 382, 439
Sau96I GGNCC 1 cut(s) 209
ScaI AGTACT 2 cut(s) 285, 307
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 1 cut(s) 162
SetI ASST 7 cut(s) 15, 39, 77, 145, 202, 220, 343
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SphI GCATGC 1 cut(s) 356
Sse9I AATT 3 cut(s) 91, 123, 253
SsiI CCGC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 328
TasI AATT 3 cut(s) 91, 123, 253
TatI WGTACW 2 cut(s) 283, 305
TfiI GAWTC 2 cut(s) 325, 433
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseI GCWGC 1 cut(s) 356
XapI RAATTY 1 cut(s) 253
XceI RCATGY 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 144
ZrmI AGTACT 2 cut(s) 285, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.