Rmu_sc0001534.1_g000008

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001534.1
OG0000194
Physical Location & Seq
Forward (+)
20000 .. 21139
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001534.1_g000008.1.cds

Sequence Viewer

Length: 1140 bp
atgagcaggttaatgtgtgaactcctaagtatcaaagtggtggataatccgggtatctacttaggactcccaacaatctgggggaggtccaaaaaggaggctcttggctgcatcaaagatagaattagcaggaagattgagggctggaaacagagttccttgtctatggctggaagagagatattgatcaagtctgttgccactgctataccatcttatccgatggcctgctttaaattccctgccaatatttgtaatggtataaactctctacttgggaatttttggtggggatcaaatgacagtagcaacaagattcattggaaaaattgggagtctcttggtcttgcaaaagatgccgggggcatgggattcagggatttacaggatttcaataaggctctactagcaaaacaatcctggagagtaatccaggaccctcactctttatgggcaagagttctcaaagcccggtacttccccaattgtgaatttaaagatgctactaaggggtacagagcctcatggggctggtctagcttgattgaagctaaggatatcattatgaaaggttctacttggcaggttataaatgggttgtcgatcaacatttggaaggacaactggctccctcccccctatgttggccctatctcatctggtcaaaatggtcccataaactaccctgatcgagtctactctttgattgattgggatatccgggcttggtctcttggccacattctgcacctacttcaaccaagggagataagtctgattctgtctttacctattggtgatggggaaggttccgatcgcctcatatggccatggaacaagaatggtgcctatacagttagatctggttatcattggatgcactccaatagacacagagccatccctagctctagtcactcttcacacatagtggacagaaatgtatggaaagtgatttggaaaattgatacgcttccaaaagtcaaaaactttctctggagagctatatctggggccattcctacccttgtagatttgtataaaaggaaaatctcctcatcacctctctgcccgatttgtggtggtcatgaagaatctattgaacatatatcctacttgtatgttcttgggttgatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

379

Amino Acids

43.01

Weight (kDa)

9.53

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
Acc36I ACCTGC 1 cut(s) 574
AccB1I GGYRCC 1 cut(s) 845
AccI GTMKAC 1 cut(s) 696
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 2 cut(s) 736, 827
AcsI RAATTY 3 cut(s) 236, 280, 491
AdeI CACNNNGTG 1 cut(s) 931
AfaI GTAC 2 cut(s) 476, 515
AfiI CCNNNNNNNGG 2 cut(s) 644, 1079
AgsI TTSAA 4 cut(s) 394, 548, 758, 1103
AjnI CCWGG 2 cut(s) 419, 432
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
AluBI AGCT 4 cut(s) 540, 551, 909, 1004
AluI AGCT 4 cut(s) 540, 551, 909, 1004
Alw26I GTCTC 2 cut(s) 342, 735
AlwI GGATC 1 cut(s) 301
AoxI GGCC 5 cut(s) 225, 646, 736, 827, 1014
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 3 cut(s) 236, 280, 491
AspS9I GGNCC 5 cut(s) 87, 436, 647, 671, 1014
AsuC2I CCSGG 4 cut(s) 51, 361, 472, 722
AsuHPI GGTGA 2 cut(s) 809, 1053
AvaII GGWCC 3 cut(s) 87, 436, 671
BalI TGGCCA 2 cut(s) 738, 829
BanI GGYRCC 1 cut(s) 845
BbvI GCAGC 1 cut(s) 95
BccI CCATC 4 cut(s) 217, 220, 794, 908
BciT130I CCWGG 2 cut(s) 421, 434
BclI TGATCA 1 cut(s) 186
BcnI CCSGG 4 cut(s) 51, 361, 472, 722
BcoDI GTCTC 2 cut(s) 342, 735
BfaI CTAG 4 cut(s) 407, 537, 906, 912
BfuAI ACCTGC 1 cut(s) 574
BglII AGATCT 1 cut(s) 860
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 6 cut(s) 51, 361, 421, 434, 472, 722
Bme18I GGWCC 3 cut(s) 87, 436, 671
BmgT120I GGNCC 5 cut(s) 87, 436, 647, 671, 1014
BmiI GGNNCC 6 cut(s) 438, 629, 673, 811, 847, 1015
BmrFI CCNGG 6 cut(s) 51, 361, 421, 434, 472, 722
BmsI GCATC 4 cut(s) 120, 346, 490, 867
BpmI CTGGAG 2 cut(s) 442, 1018
Bpu10I CCTNAGC 1 cut(s) 552
BpuMI CCSGG 4 cut(s) 51, 361, 472, 722
BsaBI GATNNNNATC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 735
BsaJI CCNNGG 3 cut(s) 360, 761, 830
Bsc4I CCNNNNNNNGG 2 cut(s) 644, 1079
Bse1I ACTGG 1 cut(s) 629
Bse8I GATNNNNATC 1 cut(s) 185
BseBI CCWGG 2 cut(s) 421, 434
BseDI CCNNGG 3 cut(s) 360, 761, 830
BseGI GGATG 2 cut(s) 882, 900
BseJI GATNNNNATC 1 cut(s) 185
BseLI CCNNNNNNNGG 2 cut(s) 644, 1079
BseNI ACTGG 1 cut(s) 629
BseRI GAGGAG 1 cut(s) 1045
BseXI GCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 731
Bsh1285I CGRYCG 1 cut(s) 817
BshFI GGCC 5 cut(s) 227, 648, 738, 829, 1016
BshNI GGYRCC 1 cut(s) 845
BsiEI CGRYCG 1 cut(s) 817
BsiSI CCGG 4 cut(s) 50, 360, 472, 721
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 2 cut(s) 644, 1079
BsmAI GTCTC 2 cut(s) 342, 735
BsmFI GGGAC 1 cut(s) 657
BsnI GGCC 5 cut(s) 227, 648, 738, 829, 1016
Bso31I GGTCTC 1 cut(s) 735
Bsp143I GATC 7 cut(s) 186, 293, 603, 688, 814, 860, 1134
Bsp19I CCATGG 1 cut(s) 830
BspANI GGCC 5 cut(s) 227, 648, 738, 829, 1016
BspHI TCATGA 1 cut(s) 1087
BspLI GGNNCC 6 cut(s) 438, 629, 673, 811, 847, 1015
BspMI ACCTGC 1 cut(s) 574
BspPI GGATC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 845
BspTNI GGTCTC 1 cut(s) 735
BsrI ACTGG 1 cut(s) 629
BssECI CCNNGG 3 cut(s) 360, 761, 830
BssMI GATC 7 cut(s) 186, 293, 603, 688, 814, 860, 1134
BssT1I CCWWGG 2 cut(s) 761, 830
Bst2UI CCWGG 2 cut(s) 421, 434
Bst4CI ACNGT 2 cut(s) 305, 856
Bst6I CTCTTC 2 cut(s) 169, 925
BstAPI GCANNNNNTGC 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 4 cut(s) 26, 61, 507, 552
BstDSI CCRYGG 1 cut(s) 830
BstF5I GGATG 2 cut(s) 882, 900
BstKTI GATC 7 cut(s) 189, 296, 606, 691, 817, 863, 1137
BstMAI GTCTC 2 cut(s) 342, 735
BstMBI GATC 7 cut(s) 186, 293, 603, 688, 814, 860, 1134
BstMCI CGRYCG 1 cut(s) 817
BstMWI GCNNNNNNNGC 3 cut(s) 356, 407, 537
BstNI CCWGG 2 cut(s) 421, 434
BstSCI CCNGG 6 cut(s) 49, 359, 419, 432, 470, 720
BstV1I GCAGC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 860
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 1 cut(s) 860
BsuRI GGCC 5 cut(s) 227, 648, 738, 829, 1016
BtgI CCRYGG 1 cut(s) 830
BtsCI GGATG 2 cut(s) 882, 900
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
BveI ACCTGC 1 cut(s) 574
Cac8I GCNNGC 1 cut(s) 229
CciI TCATGA 1 cut(s) 1087
Cfr13I GGNCC 5 cut(s) 87, 436, 647, 671, 1014
Csp6I GTAC 2 cut(s) 475, 514
CviAII CATG 4 cut(s) 367, 525, 831, 1088
CviQI GTAC 2 cut(s) 475, 514
DdeI CTNAG 4 cut(s) 26, 61, 507, 552
DpnI GATC 7 cut(s) 188, 295, 605, 690, 816, 862, 1136
DpnII GATC 7 cut(s) 186, 293, 603, 688, 814, 860, 1134
DraI TTTAAA 2 cut(s) 235, 496
DraIII CACNNNGTG 1 cut(s) 931
EaeI YGGCCR 2 cut(s) 736, 827
Eam1104I CTCTTC 2 cut(s) 169, 925
EarI CTCTTC 2 cut(s) 169, 925
Eco130I CCWWGG 2 cut(s) 761, 830
Eco31I GGTCTC 1 cut(s) 735
Eco32I GATATC 2 cut(s) 559, 718
Eco47I GGWCC 3 cut(s) 87, 436, 671
EcoO109I RGGNCCY 1 cut(s) 436
EcoRII CCWGG 2 cut(s) 419, 432
EcoRV GATATC 2 cut(s) 559, 718
EcoT14I CCWWGG 2 cut(s) 761, 830
ErhI CCWWGG 2 cut(s) 761, 830
FaeI CATG 4 cut(s) 370, 528, 834, 1091
FaqI GGGAC 1 cut(s) 657
FatI CATG 4 cut(s) 366, 524, 830, 1087
FauNDI CATATG 1 cut(s) 824
FbaI TGATCA 1 cut(s) 186
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 2 cut(s) 887, 889
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 4 cut(s) 407, 537, 906, 912
GluI GCNGC 1 cut(s) 109
GsuI CTGGAG 2 cut(s) 442, 1018
HaeIII GGCC 5 cut(s) 227, 648, 738, 829, 1016
HapII CCGG 4 cut(s) 50, 360, 472, 721
Hin1II CATG 4 cut(s) 370, 528, 834, 1091
HinfI GANTC 7 cut(s) 66, 316, 335, 372, 693, 778, 1094
HpaII CCGG 4 cut(s) 50, 360, 472, 721
HphI GGTGA 2 cut(s) 809, 1053
Hpy166II GTNNAC 3 cut(s) 20, 697, 934
Hpy188I TCNGA 3 cut(s) 222, 777, 814
Hpy188III TCNNGA 2 cut(s) 997, 1088
Hpy8I GTNNAC 3 cut(s) 20, 697, 934
HpyAV CCTTC 2 cut(s) 610, 800
HpyCH4III ACNGT 2 cut(s) 305, 856
HpyCH4V TGCA 4 cut(s) 111, 350, 748, 880
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 407, 537
HpyF3I CTNAG 4 cut(s) 26, 61, 507, 552
Hsp92II CATG 4 cut(s) 370, 528, 834, 1091
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 7 cut(s) 186, 293, 603, 688, 814, 860, 1134
LmnI GCTCC 1 cut(s) 633
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 4 cut(s) 120, 346, 490, 867
MaeI CTAG 4 cut(s) 407, 537, 906, 912
MaeIII GTNAC 1 cut(s) 914
MalI GATC 7 cut(s) 188, 295, 605, 690, 816, 862, 1136
MboI GATC 7 cut(s) 186, 293, 603, 688, 814, 860, 1134
MboII GAAGA 4 cut(s) 145, 186, 912, 1103
MfeI CAATTG 1 cut(s) 484
MflI RGATCY 1 cut(s) 860
MlsI TGGCCA 2 cut(s) 738, 829
MluCI AATT 7 cut(s) 123, 236, 280, 328, 484, 491, 963
MluNI TGGCCA 2 cut(s) 738, 829
MlyI GAGTC 3 cut(s) 60, 344, 702
MnlI CCTC 9 cut(s) 78, 91, 133, 450, 532, 642, 830, 1066, 1074
Mox20I TGGCCA 2 cut(s) 738, 829
MscI TGGCCA 2 cut(s) 738, 829
MseI TTAA 3 cut(s) 11, 234, 495
Msp20I TGGCCA 2 cut(s) 738, 829
MspI CCGG 4 cut(s) 50, 360, 472, 721
MspR9I CCNGG 6 cut(s) 51, 361, 421, 434, 472, 722
MunI CAATTG 1 cut(s) 484
MvaI CCWGG 2 cut(s) 421, 434
MwoI GCNNNNNNNGC 3 cut(s) 356, 407, 537
NciI CCSGG 4 cut(s) 51, 361, 472, 722
NcoI CCATGG 1 cut(s) 830
NdeI CATATG 1 cut(s) 824
NdeII GATC 7 cut(s) 186, 293, 603, 688, 814, 860, 1134
NlaIII CATG 4 cut(s) 370, 528, 834, 1091
NlaIV GGNNCC 6 cut(s) 438, 629, 673, 811, 847, 1015
NmuCI GTSAC 1 cut(s) 914
PagI TCATGA 1 cut(s) 1087
PfeI GAWTC 4 cut(s) 316, 372, 778, 1094
PfoI TCCNGGA 2 cut(s) 419, 432
PkrI GCNGC 1 cut(s) 110
Ple19I CGATCG 1 cut(s) 817
PleI GAGTC 3 cut(s) 60, 343, 701
PpsI GAGTC 3 cut(s) 60, 343, 701
PpuMI RGGWCCY 1 cut(s) 436
PsiI TTATAA 1 cut(s) 590
Psp5II RGGWCCY 1 cut(s) 436
Psp6I CCWGG 2 cut(s) 419, 432
PspGI CCWGG 2 cut(s) 419, 432
PspN4I GGNNCC 6 cut(s) 438, 629, 673, 811, 847, 1015
PspPI GGNCC 5 cut(s) 87, 436, 647, 671, 1014
PspPPI RGGWCCY 1 cut(s) 436
PsuI RGATCY 1 cut(s) 860
PvuI CGATCG 1 cut(s) 817
RsaI GTAC 2 cut(s) 476, 515
RsaNI GTAC 2 cut(s) 475, 514
SaqAI TTAA 3 cut(s) 11, 234, 495
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 7 cut(s) 186, 293, 603, 688, 814, 860, 1134
Sau96I GGNCC 5 cut(s) 87, 436, 647, 671, 1014
SchI GAGTC 3 cut(s) 60, 344, 702
ScrFI CCNGG 6 cut(s) 51, 361, 421, 434, 472, 722
SfaNI GCATC 4 cut(s) 120, 346, 490, 867
SinI GGWCC 3 cut(s) 87, 436, 671
Sse9I AATT 7 cut(s) 123, 236, 280, 328, 484, 491, 963
SspI AATATT 1 cut(s) 250
SspMI CTAG 4 cut(s) 407, 537, 906, 912
StyD4I CCNGG 6 cut(s) 49, 359, 419, 432, 470, 720
StyI CCWWGG 2 cut(s) 761, 830
TaaI ACNGT 2 cut(s) 305, 856
TaqI TCGA 2 cut(s) 602, 691
TasI AATT 7 cut(s) 123, 236, 280, 328, 484, 491, 963
TfiI GAWTC 4 cut(s) 316, 372, 778, 1094
Tru1I TTAA 3 cut(s) 11, 234, 495
Tru9I TTAA 3 cut(s) 11, 234, 495
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 914
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 914
TspDTI ATGAA 3 cut(s) 308, 581, 1104
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 3 cut(s) 87, 436, 671
XapI RAATTY 3 cut(s) 236, 280, 491
XmiI GTMKAC 1 cut(s) 696
XspI CTAG 4 cut(s) 407, 537, 906, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.