FvH4_6g27671

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000194
Physical Location & Seq
Forward (+)
21339921 .. 21342465
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27671.t1

Sequence Viewer

Length: 777 bp
ATGGGTGGAGCCTATTACAGAATGGAACACATTTCTTCTCCAATTGTTATGGAGGCAATAGCTGGGAGAGCGGCGTGCAAACTTGCAATTGAACATCATTTGGCACCGGTTCTGCTAGAATTAGACTACTTGCAGTTAGTTCGAGCCTCTAAAGAGGTTGAGATAGATGAGTCTGACTTTGGTGATGTAGTGGAAGATATTAAGATATGTTTATCAGTGCTTCCTTGTTTCCATTTTGTTTATGTATTTAGGGAGTCTAATTCTTTGGCTCATAAAGTAGCTAAGTTAGCTATTAGTTCAGGTTTCTCAGCACGAAAGCGGGTCAACCACAACGCCATGAGTCTAAGAGCAAGTTCACCCGCAATGAGGAAGAGGCTTGTTGGGGTCGGGCTTGGGACTGGAGGAGAGCTTCTGCTGCTTAAGAGGCAATGGGGAAGCGGTGAGGGGGAGGCTGGTAATGTTGGACACGGCGGCGATTGCGGCGGCGAGGGAGGCGGAGTAGGAGGAGGAAGAGCAGCTTACGAATGTGAGGAAGAGCAGCTTCTTCTCGAAGAGGAGGGAAGTGGGGGAGAGGAGGAGGTGGTGAGTCGGGGAGTGGAGGAACCAGATCGATCTAAGGAGTTGGAAGAGGGAGGAGAGGAAGAGGAGGAGGAGAAGAGGGAGAGGAAAGAGAGAGGGAGTGGGTTTGTTTCGGTGGGGAAGAGAAAGAAAAAGTTATTGGGTGAAGTTCTTGGTGAGAGAAAGAAGAAGATAAGATGTTTGAGGGGAGTAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

259

Amino Acids

27.95

Weight (kDa)

5.67

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 8 - 97 1.1e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccBSI CCGCTC 1 cut(s) 71
AciI CCGC 8 cut(s) 71, 319, 360, 438, 471, 480, 483, 495
AfiI CCNNNNNNNGG 1 cut(s) 366
AflII CTTAAG 1 cut(s) 419
AgeI ACCGGT 1 cut(s) 106
AgsI TTSAA 1 cut(s) 92
AjuI GAANNNNNNNTTGG 2 cut(s) 701, 733
AluBI AGCT 6 cut(s) 62, 281, 290, 409, 518, 541
AluI AGCT 6 cut(s) 62, 281, 290, 409, 518, 541
ApeKI GCWGC 3 cut(s) 415, 515, 538
AsiGI ACCGGT 1 cut(s) 106
AsuHPI GGTGA 6 cut(s) 194, 348, 452, 595, 734, 746
BanI GGYRCC 1 cut(s) 103
BbvI GCAGC 3 cut(s) 402, 527, 550
BceAI ACGGC 1 cut(s) 484
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BfaI CTAG 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 419
BisI GCNGC 7 cut(s) 72, 416, 472, 481, 484, 516, 539
BlsI GCNGC 7 cut(s) 73, 417, 473, 482, 485, 517, 540
BmiI GGNNCC 3 cut(s) 10, 105, 603
BpmI CTGGAG 1 cut(s) 420
Bsa29I ATCGAT 1 cut(s) 610
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 2 cut(s) 369, 434
BseCI ATCGAT 1 cut(s) 610
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMI GCAATG 2 cut(s) 369, 434
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 9 cut(s) 417, 519, 569, 587, 590, 648, 659, 662, 665
BseXI GCAGC 3 cut(s) 402, 527, 550
BseYI CCCAGC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 103
BshTI ACCGGT 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 610
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 1 cut(s) 366
BsmFI GGGAC 1 cut(s) 409
Bsp143I GATC 2 cut(s) 607, 611
BspACI CCGC 8 cut(s) 71, 319, 360, 438, 471, 480, 483, 495
BspCNI CTCAG 1 cut(s) 320
BspDI ATCGAT 1 cut(s) 610
BspLI GGNNCC 3 cut(s) 10, 105, 603
BspQI GCTCTTC 2 cut(s) 505, 528
BspT107I GGYRCC 1 cut(s) 103
BspTI CTTAAG 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 369, 434
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 1 cut(s) 403
BssAI RCCGGY 1 cut(s) 106
BssMI GATC 2 cut(s) 607, 611
Bst6I CTCTTC 8 cut(s) 365, 505, 528, 546, 621, 636, 650, 695
BstAFI CTTAAG 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 4 cut(s) 282, 307, 344, 615
BstKTI GATC 2 cut(s) 610, 614
BstMBI GATC 2 cut(s) 607, 611
BstMWI GCNNNNNNNGC 7 cut(s) 68, 287, 415, 424, 477, 480, 492
BstV1I GCAGC 3 cut(s) 402, 527, 550
Bsu15I ATCGAT 1 cut(s) 610
BsuTUI ATCGAT 1 cut(s) 610
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 106
ClaI ATCGAT 1 cut(s) 610
CspAI ACCGGT 1 cut(s) 106
CviAII CATG 1 cut(s) 337
DdeI CTNAG 4 cut(s) 282, 307, 344, 615
DpnI GATC 2 cut(s) 609, 613
DpnII GATC 2 cut(s) 607, 611
Eam1104I CTCTTC 8 cut(s) 365, 505, 528, 546, 621, 636, 650, 695
EarI CTCTTC 8 cut(s) 365, 505, 528, 546, 621, 636, 650, 695
EciI GGCGGA 1 cut(s) 510
FaeI CATG 1 cut(s) 340
FaiI YATR 5 cut(s) 50, 208, 243, 273, 338
FalI AAGNNNNNCTT 4 cut(s) 502, 534, 525, 557
FaqI GGGAC 1 cut(s) 409
FatI CATG 1 cut(s) 336
FauI CCCGC 2 cut(s) 312, 367
Fnu4HI GCNGC 7 cut(s) 72, 416, 472, 481, 484, 516, 539
Fsp4HI GCNGC 7 cut(s) 72, 416, 472, 481, 484, 516, 539
FspBI CTAG 1 cut(s) 116
GluI GCNGC 7 cut(s) 72, 416, 472, 481, 484, 516, 539
GsaI CCCAGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 420
HapII CCGG 1 cut(s) 107
Hin1II CATG 1 cut(s) 340
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 4 cut(s) 170, 254, 340, 586
HpaII CCGG 1 cut(s) 107
HphI GGTGA 6 cut(s) 194, 348, 452, 595, 734, 746
Hpy166II GTNNAC 2 cut(s) 325, 356
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 548
Hpy8I GTNNAC 2 cut(s) 325, 356
HpyCH4V TGCA 3 cut(s) 78, 86, 133
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 287, 415, 424, 477, 480, 492
HpyF3I CTNAG 4 cut(s) 282, 307, 344, 615
Hsp92II CATG 1 cut(s) 340
Kzo9I GATC 2 cut(s) 607, 611
LguI GCTCTTC 2 cut(s) 505, 528
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 6 cut(s) 48, 120, 285, 384, 438, 618
Lsp1109I GCAGC 3 cut(s) 402, 527, 550
MaeI CTAG 1 cut(s) 116
MalI GATC 2 cut(s) 609, 613
MbiI CCGCTC 1 cut(s) 71
MboI GATC 2 cut(s) 607, 611
MfeI CAATTG 2 cut(s) 42, 87
MluCI AATT 4 cut(s) 42, 87, 119, 259
MlyI GAGTC 4 cut(s) 179, 263, 349, 595
MmeI TCCRAC 2 cut(s) 442, 603
MseI TTAA 3 cut(s) 201, 420, 775
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 1 cut(s) 107
MunI CAATTG 2 cut(s) 42, 87
MwoI GCNNNNNNNGC 7 cut(s) 68, 287, 415, 424, 477, 480, 492
NdeII GATC 2 cut(s) 607, 611
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 3 cut(s) 10, 105, 603
PciSI GCTCTTC 2 cut(s) 505, 528
PinAI ACCGGT 1 cut(s) 106
PkrI GCNGC 7 cut(s) 73, 417, 473, 482, 485, 517, 540
PleI GAGTC 4 cut(s) 178, 262, 348, 594
PpsI GAGTC 4 cut(s) 178, 262, 348, 594
PspFI CCCAGC 1 cut(s) 62
PspN4I GGNNCC 3 cut(s) 10, 105, 603
SapI GCTCTTC 2 cut(s) 505, 528
SaqAI TTAA 3 cut(s) 201, 420, 775
SatI GCNGC 7 cut(s) 72, 416, 472, 481, 484, 516, 539
Sau3AI GATC 2 cut(s) 607, 611
SchI GAGTC 4 cut(s) 179, 263, 349, 595
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 4 cut(s) 42, 87, 119, 259
SsiI CCGC 8 cut(s) 71, 319, 360, 438, 471, 480, 483, 495
SspMI CTAG 1 cut(s) 116
TaqI TCGA 3 cut(s) 142, 549, 610
TasI AATT 4 cut(s) 42, 87, 119, 259
TauI GCSGC 4 cut(s) 74, 474, 483, 486
Tru1I TTAA 3 cut(s) 201, 420, 775
Tru9I TTAA 3 cut(s) 201, 420, 775
TscAI CASTG 1 cut(s) 222
TseI GCWGC 3 cut(s) 415, 515, 538
TspRI CASTG 1 cut(s) 222
Vha464I CTTAAG 1 cut(s) 419
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.