MD07G1135800.v1.1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000194
Physical Location & Seq
Reverse (-)
19818943 .. 19820117
1175 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1135800.v1.1.491

Sequence Viewer

Length: 1041 bp
ATGTTAGCAAAGGTTGGGTGGCGTATTATTTGTAATCCAGATTCTATCCTTGCTAAAGTTCTCCGGGCGAAATATTATCCTTCCTCTTCTTTTTTAGAGGCACCTATGGGAAGAGGTACTTCGTGGGGGTGGAAAGGGATCCTGCAGGGTTGGAAAATATTGAAAGGAGGGCTCCGATGGCGGGTTGGGAATGGTGGGACTATACGGATTGCTACTGACCCATGGATGCCAACCCCACGGACCTTCCTTCCCCTTTCCCGATCCGTGTATATGCCACAAATGGTTGGGGAGTTGGTGGGCGCGGATGATGTATGGACAAAGGATATAATTAACAGGTGTTTTAATGAGGAGGAGGCCCGCGTTATCTTAAGCATGTCTCTTAGGAAATTTGGGTGTCCGGATCGAATCATTTGGCACTACATACGAAATGGCCTATACTCTGTTAAATTGGGTTATAGGATTGCTCAGGAGATGAATCAGAATGGAGAGCTTGGGCGGAAGAGTGTGGGACAGTCAAGTGGGGAGCGTATTAGGGATCCTGTTTGGGTGGATTTATGGAAGCTCCAGGTTCCTCCAAAGCTTAGGCATTTTTTTTGGAAGAGTTGTAAAAATATCCTTGCTGTTCGAATGAATTTGCTACGACGTGGAGTTCGTTTAGAGACAAATTGTCCACACTGTGGGAATGAGGGAGAGACACAGGTACACCTCTTTTTTAAATGCCCATATGCTCGGGTCTTTTGGTTTGGTTCTCCTTTACAAATGGATGTGGTATCAGTGGAAGGGGAAGATTTCCTGGAATGTTGGAAGTGGCTGTGCAGAAAATATGGTTTGGAAGTGGAGGGGGTTCAGTTCATGCGTTGGGTTGTATGCGGGTTGTGGAGGATATGGAAGTGTAGGAATCAAATGGTTTTTGAGAAGACTATGGTGGAGCCAAATGTTGCTTTGGAACTATTGCAGGGGCACTGGGGGGAGCTTGACGTTTTGACCGAGAGCATCCACGGCCTGCAAGTCGTTCACGTCAGGTTGGGGGTGAGGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

347

Amino Acids

40.1

Weight (kDa)

9.5

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 177 - 247 4.6e-17 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 677
AccII CGCG 2 cut(s) 302, 360
AccIII TCCGGA 1 cut(s) 397
AciI CCGC 5 cut(s) 181, 302, 358, 496, 870
AclWI GGATC 6 cut(s) 133, 146, 255, 408, 530, 543
AcsI RAATTY 2 cut(s) 386, 631
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 2 cut(s) 118, 702
AfiI CCNNNNNNNGG 2 cut(s) 181, 677
AflII CTTAAG 1 cut(s) 367
AgsI TTSAA 1 cut(s) 163
AhdI GACNNNNNGTC 1 cut(s) 666
AjiI CACGTC 2 cut(s) 644, 1018
AjnI CCWGG 2 cut(s) 564, 792
AluBI AGCT 4 cut(s) 490, 562, 580, 973
AluI AGCT 4 cut(s) 490, 562, 580, 973
Alw26I GTCTC 3 cut(s) 381, 653, 686
AlwI GGATC 6 cut(s) 133, 146, 255, 408, 530, 543
Ama87I CYCGRG 1 cut(s) 729
Aor13HI TCCGGA 1 cut(s) 397
AoxI GGCC 3 cut(s) 354, 430, 1000
ApoI RAATTY 2 cut(s) 386, 631
ArsI GACNNNNNNTTYG 2 cut(s) 633, 665
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 2 cut(s) 240, 355
AsuC2I CCSGG 1 cut(s) 65
AsuII TTCGAA 1 cut(s) 625
AvaI CYCGRG 1 cut(s) 729
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 963
BamHI GGATCC 2 cut(s) 138, 535
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 923
BccI CCATC 1 cut(s) 171
BceAI ACGGC 1 cut(s) 1015
BciT130I CCWGG 2 cut(s) 566, 794
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 381, 653, 686
BfmI CTRYAG 1 cut(s) 143
BfrI CTTAAG 1 cut(s) 367
Bme1390I CCNGG 3 cut(s) 65, 566, 794
Bme18I GGWCC 1 cut(s) 240
BmeRI GACNNNNNGTC 1 cut(s) 666
BmeT110I CYCGRG 1 cut(s) 729
BmgBI CACGTC 2 cut(s) 644, 1018
BmgT120I GGNCC 2 cut(s) 240, 355
BmiI GGNNCC 6 cut(s) 102, 140, 173, 537, 570, 930
BmrFI CCNGG 3 cut(s) 65, 566, 794
BmrI ACTGGG 1 cut(s) 973
BmsI GCATC 2 cut(s) 216, 1002
BmuI ACTGGG 1 cut(s) 973
BpiI GAAGAC 1 cut(s) 923
BpmI CTGGAG 1 cut(s) 548
Bpu10I CCTNAGC 2 cut(s) 465, 581
Bpu14I TTCGAA 1 cut(s) 625
BpuMI CCSGG 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 221, 236, 997
BsaWI WCCGGW 1 cut(s) 397
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 677
Bse1I ACTGG 1 cut(s) 968
BseAI TCCGGA 1 cut(s) 397
BseBI CCWGG 2 cut(s) 566, 794
BseDI CCNNGG 3 cut(s) 221, 236, 997
BseGI GGATG 4 cut(s) 231, 310, 769, 993
BseLI CCNNNNNNNGG 2 cut(s) 181, 677
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 1 cut(s) 968
BseRI GAGGAG 2 cut(s) 362, 365
BseSI GKGCMC 1 cut(s) 963
BsgI GTGCAG 1 cut(s) 835
Bsh1236I CGCG 2 cut(s) 302, 360
BshFI GGCC 3 cut(s) 356, 432, 1002
BshNI GGYRCC 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 729
BsiSI CCGG 2 cut(s) 64, 398
BslFI GGGAC 2 cut(s) 211, 522
BslI CCNNNNNNNGG 2 cut(s) 181, 677
BsmAI GTCTC 3 cut(s) 381, 653, 686
BsmFI GGGAC 2 cut(s) 211, 522
BsnI GGCC 3 cut(s) 356, 432, 1002
BsoBI CYCGRG 1 cut(s) 729
Bsp119I TTCGAA 1 cut(s) 625
Bsp1286I GDGCHC 2 cut(s) 174, 963
Bsp13I TCCGGA 1 cut(s) 397
Bsp143I GATC 4 cut(s) 138, 260, 400, 535
Bsp19I CCATGG 1 cut(s) 221
BspACI CCGC 5 cut(s) 181, 302, 358, 496, 870
BspANI GGCC 3 cut(s) 356, 432, 1002
BspCNI CTCAG 1 cut(s) 478
BspEI TCCGGA 1 cut(s) 397
BspFNI CGCG 2 cut(s) 302, 360
BspLI GGNNCC 6 cut(s) 102, 140, 173, 537, 570, 930
BspMAI CTGCAG 1 cut(s) 147
BspPI GGATC 6 cut(s) 133, 146, 255, 408, 530, 543
BspT104I TTCGAA 1 cut(s) 625
BspT107I GGYRCC 1 cut(s) 100
BspTI CTTAAG 1 cut(s) 367
BsrI ACTGG 1 cut(s) 968
BssECI CCNNGG 3 cut(s) 221, 236, 997
BssMI GATC 4 cut(s) 138, 260, 400, 535
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 566, 794
Bst4CI ACNGT 2 cut(s) 513, 677
Bst6I CTCTTC 4 cut(s) 91, 106, 494, 593
BstAFI CTTAAG 1 cut(s) 367
BstBI TTCGAA 1 cut(s) 625
BstC8I GCNNGC 2 cut(s) 358, 1004
BstDEI CTNAG 3 cut(s) 380, 465, 581
BstDSI CCRYGG 3 cut(s) 221, 236, 997
BstF5I GGATG 4 cut(s) 231, 310, 769, 993
BstFNI CGCG 2 cut(s) 302, 360
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 4 cut(s) 141, 263, 403, 538
BstMAI GTCTC 3 cut(s) 381, 653, 686
BstMBI GATC 4 cut(s) 138, 260, 400, 535
BstMWI GCNNNNNNNGC 2 cut(s) 178, 999
BstNI CCWGG 2 cut(s) 566, 794
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 63, 564, 792
BstSFI CTRYAG 1 cut(s) 143
BstSLI GKGCMC 1 cut(s) 963
BstUI CGCG 2 cut(s) 302, 360
BstV2I GAAGAC 1 cut(s) 923
BstX2I RGATCY 2 cut(s) 138, 535
BstYI RGATCY 2 cut(s) 138, 535
BsuRI GGCC 3 cut(s) 356, 432, 1002
BtgI CCRYGG 3 cut(s) 221, 236, 997
BtrI CACGTC 2 cut(s) 644, 1018
BtsCI GGATG 4 cut(s) 231, 310, 769, 993
BtsIMutI CAGTG 3 cut(s) 673, 780, 961
Cac8I GCNNGC 2 cut(s) 358, 1004
CfoI GCGC 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 240, 355
Csp6I GTAC 2 cut(s) 117, 701
CviAII CATG 3 cut(s) 222, 373, 853
CviQI GTAC 2 cut(s) 117, 701
DdeI CTNAG 3 cut(s) 380, 465, 581
DpnI GATC 4 cut(s) 140, 262, 402, 537
DpnII GATC 4 cut(s) 138, 260, 400, 535
DraI TTTAAA 1 cut(s) 715
DraIII CACNNNGTG 1 cut(s) 677
DriI GACNNNNNGTC 1 cut(s) 666
Eam1104I CTCTTC 4 cut(s) 91, 106, 494, 593
Eam1105I GACNNNNNGTC 1 cut(s) 666
EarI CTCTTC 4 cut(s) 91, 106, 494, 593
EciI GGCGGA 1 cut(s) 511
Eco130I CCWWGG 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 729
EcoRII CCWGG 2 cut(s) 564, 792
EcoT14I CCWWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 3 cut(s) 225, 376, 856
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FaqI GGGAC 2 cut(s) 211, 522
FatI CATG 3 cut(s) 221, 372, 852
FauI CCCGC 3 cut(s) 174, 365, 863
FauNDI CATATG 1 cut(s) 724
FokI GGATG 4 cut(s) 238, 317, 776, 980
FriOI GRGCYC 1 cut(s) 174
GlaI GCGC 1 cut(s) 301
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 3 cut(s) 356, 432, 1002
HapII CCGG 2 cut(s) 64, 398
HhaI GCGC 1 cut(s) 302
Hin1II CATG 3 cut(s) 225, 376, 856
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 4 cut(s) 41, 405, 475, 898
HpaII CCGG 2 cut(s) 64, 398
Hpy166II GTNNAC 3 cut(s) 671, 703, 1015
Hpy188I TCNGA 2 cut(s) 176, 480
Hpy188III TCNNGA 4 cut(s) 38, 258, 398, 467
Hpy8I GTNNAC 3 cut(s) 671, 703, 1015
Hpy99I CGWCG 1 cut(s) 645
HpyAV CCTTC 4 cut(s) 90, 253, 257, 773
HpyCH4III ACNGT 2 cut(s) 513, 677
HpyCH4IV ACGT 3 cut(s) 643, 978, 1017
HpyCH4V TGCA 4 cut(s) 145, 816, 955, 1006
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 999
HpyF3I CTNAG 3 cut(s) 380, 465, 581
HpySE526I ACGT 3 cut(s) 643, 978, 1017
Hsp92II CATG 3 cut(s) 225, 376, 856
HspAI GCGC 1 cut(s) 300
Kpn2I TCCGGA 1 cut(s) 397
Kzo9I GATC 4 cut(s) 138, 260, 400, 535
LmnI GCTCC 5 cut(s) 177, 523, 567, 928, 970
LweI GCATC 2 cut(s) 216, 1002
MaeII ACGT 3 cut(s) 643, 978, 1017
MalI GATC 4 cut(s) 140, 262, 402, 537
MboI GATC 4 cut(s) 138, 260, 400, 535
MboII GAAGA 6 cut(s) 78, 123, 511, 610, 797, 928
MflI RGATCY 2 cut(s) 138, 535
MhlI GDGCHC 2 cut(s) 174, 963
MluCI AATT 5 cut(s) 327, 386, 446, 631, 664
MmeI TCCRAC 2 cut(s) 131, 782
MroI TCCGGA 1 cut(s) 397
MseI TTAA 5 cut(s) 330, 342, 368, 444, 714
MspCI CTTAAG 1 cut(s) 367
MspI CCGG 2 cut(s) 64, 398
MspR9I CCNGG 3 cut(s) 65, 566, 794
MvaI CCWGG 2 cut(s) 566, 794
MvnI CGCG 2 cut(s) 302, 360
MwoI GCNNNNNNNGC 2 cut(s) 178, 999
NciI CCSGG 1 cut(s) 65
NcoI CCATGG 1 cut(s) 221
NdeI CATATG 1 cut(s) 724
NdeII GATC 4 cut(s) 138, 260, 400, 535
NlaIII CATG 3 cut(s) 225, 376, 856
NlaIV GGNNCC 6 cut(s) 102, 140, 173, 537, 570, 930
NspI RCATGY 1 cut(s) 376
NspV TTCGAA 1 cut(s) 625
PcsI WCGNNNNNNNCGW 2 cut(s) 649, 984
PfeI GAWTC 4 cut(s) 41, 405, 475, 898
PflMI CCANNNNNTGG 1 cut(s) 677
PfoI TCCNGGA 1 cut(s) 792
Psp6I CCWGG 2 cut(s) 564, 792
PspGI CCWGG 2 cut(s) 564, 792
PspN4I GGNNCC 6 cut(s) 102, 140, 173, 537, 570, 930
PspPI GGNCC 2 cut(s) 240, 355
PstI CTGCAG 1 cut(s) 147
PsuI RGATCY 2 cut(s) 138, 535
RsaI GTAC 2 cut(s) 118, 702
RsaNI GTAC 2 cut(s) 117, 701
SaqAI TTAA 5 cut(s) 330, 342, 368, 444, 714
Sau3AI GATC 4 cut(s) 138, 260, 400, 535
Sau96I GGNCC 2 cut(s) 240, 355
SbfI CCTGCAGG 1 cut(s) 147
ScrFI CCNGG 3 cut(s) 65, 566, 794
SdaI CCTGCAGG 1 cut(s) 147
SduI GDGCHC 2 cut(s) 174, 963
SfaNI GCATC 2 cut(s) 216, 1002
SfcI CTRYAG 1 cut(s) 143
SfuI TTCGAA 1 cut(s) 625
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse8387I CCTGCAGG 1 cut(s) 147
Sse9I AATT 5 cut(s) 327, 386, 446, 631, 664
SsiI CCGC 5 cut(s) 181, 302, 358, 496, 870
SspI AATATT 2 cut(s) 74, 159
StyD4I CCNGG 3 cut(s) 63, 564, 792
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 513, 677
TaiI ACGT 3 cut(s) 646, 981, 1020
TaqI TCGA 2 cut(s) 403, 625
TaqII GACCGA 1 cut(s) 1001
TasI AATT 5 cut(s) 327, 386, 446, 631, 664
TfiI GAWTC 4 cut(s) 41, 405, 475, 898
Tru1I TTAA 5 cut(s) 330, 342, 368, 444, 714
Tru9I TTAA 5 cut(s) 330, 342, 368, 444, 714
TscAI CASTG 3 cut(s) 680, 780, 968
TspDTI ATGAA 3 cut(s) 488, 644, 841
TspGWI ACGGA 3 cut(s) 220, 253, 253
TspRI CASTG 3 cut(s) 680, 780, 968
Van91I CCANNNNNTGG 1 cut(s) 677
Vha464I CTTAAG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 2 cut(s) 386, 631
XceI RCATGY 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.