Rmu_sc0002529.1_g000008

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002529.1
OG0000194
Physical Location & Seq
Reverse (-)
41546 .. 42034
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002529.1_g000008.1.cds

Sequence Viewer

Length: 489 bp
atgtgtgaattgctaaagatagtcgacactgaaaatcctgacaattatctgggcctccctaccatgtgggccaggtcaaagaaagctgcccttagttacatcaaagagagactactgggaaagatcgagggatggaaacaaaatactccctctatggctggaggagaaactcttattaaatccgtagccttggcggtgccggcctacccaatggcctgttttagattcccaaagggcctttgcaatgagctaaattcagccattagcaatttctggtggggttcgaatgatcatgggaacaaattgcattggaagagttgggatttcttatgtctccctaagaaagatagtggtttagggtttagggatttggctgatttcaacattgcactccttgcaaagcagtgttggagaccgcattcagaatccaacttcattatgggcaagggctctaaaagcgagatactttccaacctgcaactttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

162

Amino Acids

18.21

Weight (kDa)

8.98

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 483
AccB1I GGYRCC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 24
AciI CCGC 2 cut(s) 194, 416
AcsI RAATTY 1 cut(s) 253
AgsI TTSAA 1 cut(s) 382
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 2 cut(s) 86, 250
AluI AGCT 2 cut(s) 86, 250
Alw26I GTCTC 3 cut(s) 103, 338, 406
AoxI GGCC 5 cut(s) 52, 69, 201, 213, 235
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 253
AspS9I GGNCC 3 cut(s) 52, 69, 235
AsuII TTCGAA 1 cut(s) 284
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 452
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 73
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 3 cut(s) 103, 338, 406
BfuAI ACCTGC 1 cut(s) 483
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 73
BmgT120I GGNCC 3 cut(s) 52, 69, 235
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 73
BmrI ACTGGG 1 cut(s) 125
BmuI ACTGGG 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 189
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 120
Bse3DI GCAATG 2 cut(s) 250, 384
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 137
BseMI GCAATG 2 cut(s) 250, 384
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 5 cut(s) 54, 71, 203, 215, 237
BshNI GGYRCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 200
BsmAI GTCTC 3 cut(s) 103, 338, 406
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 5 cut(s) 54, 71, 203, 215, 237
Bso31I GGTCTC 1 cut(s) 406
Bsp119I TTCGAA 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 2 cut(s) 123, 289
BspACI CCGC 2 cut(s) 194, 416
BspANI GGCC 5 cut(s) 54, 71, 203, 215, 237
BspLI GGNNCC 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 483
BspT104I TTCGAA 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 406
BsrDI GCAATG 2 cut(s) 250, 384
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 2 cut(s) 123, 289
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 92, 339
BstF5I GGATG 1 cut(s) 137
BstKTI GATC 2 cut(s) 126, 292
BstMAI GTCTC 3 cut(s) 103, 338, 406
BstMBI GATC 2 cut(s) 123, 289
BstMWI GCNNNNNNNGC 3 cut(s) 200, 395, 456
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 73
BsuRI GGCC 5 cut(s) 54, 71, 203, 215, 237
BtsCI GGATG 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 410
BtsIMutI CAGTG 2 cut(s) 27, 410
BveI ACCTGC 1 cut(s) 483
Cac8I GCNNGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 3 cut(s) 52, 69, 235
CviAII CATG 2 cut(s) 64, 293
DdeI CTNAG 2 cut(s) 92, 339
DpnI GATC 2 cut(s) 125, 291
DpnII GATC 2 cut(s) 123, 289
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 2 cut(s) 67, 296
FaiI YATR 5 cut(s) 65, 155, 294, 331, 440
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 2 cut(s) 63, 292
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 452
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 5 cut(s) 54, 71, 203, 215, 237
HapII CCGG 1 cut(s) 200
Hin1II CATG 2 cut(s) 67, 296
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 225, 425
HpaII CCGG 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 2 cut(s) 38, 486
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4V TGCA 5 cut(s) 243, 307, 389, 398, 478
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 395, 456
HpyF3I CTNAG 2 cut(s) 92, 339
Hsp92II CATG 2 cut(s) 67, 296
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 123, 289
LpnPI CCDG 9 cut(s) 35, 51, 58, 85, 101, 144, 213, 229, 259
Lsp1109I GCAGC 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 125, 291
MboI GATC 2 cut(s) 123, 289
MboII GAAGA 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 5 cut(s) 8, 43, 253, 268, 302
MmeI TCCRAC 2 cut(s) 389, 453
MnlI CCTC 4 cut(s) 65, 121, 155, 160
MroNI GCCGGC 1 cut(s) 199
MseI TTAA 1 cut(s) 177
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 73
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 3 cut(s) 200, 395, 456
NaeI GCCGGC 1 cut(s) 201
NdeII GATC 2 cut(s) 123, 289
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 2 cut(s) 67, 296
NlaIV GGNNCC 1 cut(s) 198
NspV TTCGAA 1 cut(s) 284
PctI GAATGC 1 cut(s) 418
PdiI GCCGGC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 225, 425
PkrI GCNGC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 3 cut(s) 52, 69, 235
SalI GTCGAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 123, 289
Sau96I GGNCC 3 cut(s) 52, 69, 235
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 1 cut(s) 452
SetI ASST 4 cut(s) 77, 88, 252, 477
SfuI TTCGAA 1 cut(s) 284
Sse9I AATT 5 cut(s) 8, 43, 253, 268, 302
SsiI CCGC 2 cut(s) 194, 416
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 189
TaqI TCGA 3 cut(s) 24, 126, 284
TasI AATT 5 cut(s) 8, 43, 253, 268, 302
TfiI GAWTC 2 cut(s) 225, 425
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 2 cut(s) 34, 410
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 424
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 2 cut(s) 34, 410
XapI RAATTY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.