Rmu_sc0002531.1_g000043

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002531.1
OG0000194
Physical Location & Seq
Reverse (-)
235039 .. 236028
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002531.1_g000043.1.cds

Sequence Viewer

Length: 990 bp
atgggtttcagaaacctaggagatttcgacactacactcctagccaagcagatatggaggttacatactgaacctaactctttttgggcaaagatgatcaaaggtatatattatccccattcaaatgttctacaagcggggaaaggttctagagcttcttgggcctggagcagcttacttgaaggaaaaacccttattgaagaaggggctagatggatggttggcaatggctgctccattgacatctggaaggaccaatggattttgaactctgagctgggttacattcgtcccattatacccatctcacttgatgtgcctaccaaagtgtctaacttgattgattgggattcttatacatggaatctacaaccaattattagcctagttatagagagagatatgcaagaaatcgagatgcagatgttcagtgacaccttggttgaagacaaattaatttggcccgcagcaaagaatggttcctacactgtaaaatcagggtataatctcttccactatctaaattttaagcccacaggacatatgagccactcctctcacagagtacaccaggttgtctggactactatttggtatatccaaaccctccccaagatcaagcattttttgtggcaagttgtcaacaatgctatctgtacttactataatctcttcaaaagaaagattgttgcttcccctatttgtccaaaatgtggcctagctccggaaacaattgaacacatcatcctactctgccctactgctatatgcacttggtttgcttgttcattaaattacaagattaatgtccaagagattacttcaattgatagaaggattgaacaaattatcaagctagcaggcccacacaaggagcttcaaaaaagttgccttaccaccatttccttcatcttctgggagctgtggaagagtagatgtcaattgatatatcaggccaccaatacccatccaatgatgattgatctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

329

Amino Acids

38.21

Weight (kDa)

8.63

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 713
AccIII TCCGGA 1 cut(s) 724
AciI CCGC 2 cut(s) 137, 465
AcsI RAATTY 1 cut(s) 523
AfaI GTAC 2 cut(s) 567, 658
AfiI CCNNNNNNNGG 3 cut(s) 713, 724, 871
AjnI CCWGG 2 cut(s) 164, 570
AloI GAACNNNNNNTCC 2 cut(s) 729, 761
AluBI AGCT 7 cut(s) 155, 174, 277, 722, 856, 877, 922
AluI AGCT 7 cut(s) 155, 174, 277, 722, 856, 877, 922
Aor13HI TCCGGA 1 cut(s) 724
AoxI GGCC 5 cut(s) 162, 461, 715, 862, 954
ApeKI GCWGC 3 cut(s) 171, 231, 467
ApoI RAATTY 1 cut(s) 523
AseI ATTAAT 2 cut(s) 455, 804
AspA2I CCTAGG 1 cut(s) 16
AspS9I GGNCC 4 cut(s) 162, 253, 462, 863
AsuNHI GCTAGC 1 cut(s) 856
AvaII GGWCC 1 cut(s) 253
AvrII CCTAGG 1 cut(s) 16
BarI GAAGNNNNNNTAC 2 cut(s) 494, 526
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 3 cut(s) 183, 218, 479
BccI CCATC 4 cut(s) 207, 211, 311, 975
BciT130I CCWGG 2 cut(s) 166, 572
BclI TGATCA 1 cut(s) 96
BfaI CTAG 8 cut(s) 17, 41, 150, 210, 386, 719, 857, 988
BisI GCNGC 3 cut(s) 172, 232, 468
BlnI CCTAGG 1 cut(s) 16
BlsI GCNGC 3 cut(s) 173, 233, 469
Bme1390I CCNGG 2 cut(s) 166, 572
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 4 cut(s) 162, 253, 462, 863
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 2 cut(s) 166, 572
BmsI GCATC 1 cut(s) 408
BmtI GCTAGC 1 cut(s) 860
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 16, 438
BsaWI WCCGGW 1 cut(s) 724
Bsc4I CCNNNNNNNGG 3 cut(s) 713, 724, 871
Bse3DI GCAATG 1 cut(s) 232
BseAI TCCGGA 1 cut(s) 724
BseBI CCWGG 2 cut(s) 166, 572
BseDI CCNNGG 2 cut(s) 16, 438
BseGI GGATG 3 cut(s) 222, 744, 967
BseLI CCNNNNNNNGG 3 cut(s) 713, 724, 871
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 544
BseXI GCAGC 3 cut(s) 183, 218, 479
BseYI CCCAGC 1 cut(s) 277
BshFI GGCC 5 cut(s) 164, 463, 717, 864, 956
BsiSI CCGG 1 cut(s) 725
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 3 cut(s) 713, 724, 871
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 5 cut(s) 164, 463, 717, 864, 956
Bsp13I TCCGGA 1 cut(s) 724
Bsp143I GATC 3 cut(s) 96, 615, 982
BspACI CCGC 2 cut(s) 137, 465
BspANI GGCC 5 cut(s) 164, 463, 717, 864, 956
BspCNI CTCAG 1 cut(s) 265
BspEI TCCGGA 1 cut(s) 724
BspLI GGNNCC 1 cut(s) 481
BspOI GCTAGC 1 cut(s) 860
BsrDI GCAATG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 16, 438
BssMI GATC 3 cut(s) 96, 615, 982
BssT1I CCWWGG 2 cut(s) 16, 438
Bst2UI CCWGG 2 cut(s) 166, 572
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 3 cut(s) 515, 677, 923
BstAPI GCANNNNNTGC 1 cut(s) 231
BstC8I GCNNGC 3 cut(s) 465, 858, 862
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 3 cut(s) 222, 744, 967
BstKTI GATC 3 cut(s) 99, 618, 985
BstMBI GATC 3 cut(s) 96, 615, 982
BstMWI GCNNNNNNNGC 2 cut(s) 161, 231
BstNI CCWGG 2 cut(s) 166, 572
BstSCI CCNGG 2 cut(s) 164, 570
BstV1I GCAGC 3 cut(s) 183, 218, 479
BstV2I GAAGAC 1 cut(s) 453
BsuRI GGCC 5 cut(s) 164, 463, 717, 864, 956
BtsCI GGATG 3 cut(s) 222, 744, 967
BtsIMutI CAGTG 2 cut(s) 436, 486
Cac8I GCNNGC 3 cut(s) 465, 858, 862
Cfr13I GGNCC 4 cut(s) 162, 253, 462, 863
CsiI ACCWGGT 1 cut(s) 570
Csp6I GTAC 2 cut(s) 566, 657
CviAII CATG 1 cut(s) 360
CviQI GTAC 2 cut(s) 566, 657
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 98, 617, 984
DpnII GATC 3 cut(s) 96, 615, 982
Eam1104I CTCTTC 3 cut(s) 515, 677, 923
EarI CTCTTC 3 cut(s) 515, 677, 923
Eco130I CCWWGG 2 cut(s) 16, 438
Eco47I GGWCC 1 cut(s) 253
EcoRII CCWGG 2 cut(s) 164, 570
EcoT14I CCWWGG 2 cut(s) 16, 438
ErhI CCWWGG 2 cut(s) 16, 438
FaeI CATG 1 cut(s) 363
FaqI GGGAC 1 cut(s) 276
FatI CATG 1 cut(s) 359
FauI CCCGC 2 cut(s) 130, 472
FauNDI CATATG 1 cut(s) 543
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 172, 232, 468
FokI GGATG 3 cut(s) 229, 731, 954
Fsp4HI GCNGC 3 cut(s) 172, 232, 468
FspBI CTAG 8 cut(s) 17, 41, 150, 210, 386, 719, 857, 988
GluI GCNGC 3 cut(s) 172, 232, 468
GsaI CCCAGC 1 cut(s) 281
GsuI CTGGAG 1 cut(s) 187
HaeIII GGCC 5 cut(s) 164, 463, 717, 864, 956
HapII CCGG 1 cut(s) 725
Hin1II CATG 1 cut(s) 363
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HinfI GANTC 2 cut(s) 350, 364
HpaII CCGG 1 cut(s) 725
Hpy166II GTNNAC 2 cut(s) 568, 643
Hpy188I TCNGA 2 cut(s) 11, 274
Hpy188III TCNNGA 5 cut(s) 150, 247, 415, 580, 725
Hpy8I GTNNAC 2 cut(s) 568, 643
HpyAV CCTTC 5 cut(s) 176, 197, 244, 828, 916
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4V TGCA 3 cut(s) 406, 421, 771
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 231
HpyF3I CTNAG 1 cut(s) 273
Hsp92II CATG 1 cut(s) 363
Kpn2I TCCGGA 1 cut(s) 724
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 3 cut(s) 96, 615, 982
LmnI GCTCC 5 cut(s) 168, 239, 727, 874, 919
Lsp1109I GCAGC 3 cut(s) 183, 218, 479
LweI GCATC 1 cut(s) 408
MabI ACCWGGT 1 cut(s) 570
MaeI CTAG 8 cut(s) 17, 41, 150, 210, 386, 719, 857, 988
MaeIII GTNAC 3 cut(s) 60, 281, 431
MalI GATC 3 cut(s) 98, 617, 984
MboI GATC 3 cut(s) 96, 615, 982
MboII GAAGA 6 cut(s) 212, 458, 502, 664, 904, 940
MfeI CAATTG 3 cut(s) 732, 825, 941
MluCI AATT 9 cut(s) 375, 452, 456, 523, 732, 793, 825, 846, 941
MnlI CCTC 3 cut(s) 51, 565, 617
MroI TCCGGA 1 cut(s) 724
MseI TTAA 4 cut(s) 455, 528, 791, 804
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 1 cut(s) 725
MspR9I CCNGG 2 cut(s) 166, 572
MunI CAATTG 3 cut(s) 732, 825, 941
MvaI CCWGG 2 cut(s) 166, 572
MwoI GCNNNNNNNGC 2 cut(s) 161, 231
NdeI CATATG 1 cut(s) 543
NdeII GATC 3 cut(s) 96, 615, 982
NheI GCTAGC 1 cut(s) 856
NlaIII CATG 1 cut(s) 363
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 431
PfeI GAWTC 2 cut(s) 350, 364
PflMI CCANNNNNTGG 1 cut(s) 713
PkrI GCNGC 3 cut(s) 173, 233, 469
PshBI ATTAAT 2 cut(s) 455, 804
Psp6I CCWGG 2 cut(s) 164, 570
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 2 cut(s) 164, 570
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 4 cut(s) 162, 253, 462, 863
RsaI GTAC 2 cut(s) 567, 658
RsaNI GTAC 2 cut(s) 566, 657
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 4 cut(s) 455, 528, 791, 804
SatI GCNGC 3 cut(s) 172, 232, 468
Sau3AI GATC 3 cut(s) 96, 615, 982
Sau96I GGNCC 4 cut(s) 162, 253, 462, 863
ScrFI CCNGG 2 cut(s) 166, 572
SexAI ACCWGGT 1 cut(s) 570
SfaNI GCATC 1 cut(s) 408
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 9 cut(s) 375, 452, 456, 523, 732, 793, 825, 846, 941
SsiI CCGC 2 cut(s) 137, 465
SspMI CTAG 8 cut(s) 17, 41, 150, 210, 386, 719, 857, 988
StyD4I CCNGG 2 cut(s) 164, 570
StyI CCWWGG 2 cut(s) 16, 438
TaaI ACNGT 1 cut(s) 490
TaqI TCGA 2 cut(s) 27, 414
TasI AATT 9 cut(s) 375, 452, 456, 523, 732, 793, 825, 846, 941
TatI WGTACW 2 cut(s) 565, 656
TfiI GAWTC 2 cut(s) 350, 364
Tru1I TTAA 4 cut(s) 455, 528, 791, 804
Tru9I TTAA 4 cut(s) 455, 528, 791, 804
TscAI CASTG 2 cut(s) 436, 493
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 3 cut(s) 171, 231, 467
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 777, 898
TspRI CASTG 2 cut(s) 436, 493
Van91I CCANNNNNTGG 1 cut(s) 713
VpaK11BI GGWCC 1 cut(s) 253
VspI ATTAAT 2 cut(s) 455, 804
XapI RAATTY 1 cut(s) 523
XbaI TCTAGA 1 cut(s) 149
XmaJI CCTAGG 1 cut(s) 16
XspI CTAG 8 cut(s) 17, 41, 150, 210, 386, 719, 857, 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.