Rmu_sc0005687.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005687.1
OG0000194
Physical Location & Seq
Reverse (-)
499 .. 1233
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005687.1_g000001.1.cds

Sequence Viewer

Length: 735 bp
atgaaattggtgaaagatctggggaagtatttaggccttcctacaatttggcaccggtcaaagtcagctgcacttggctatgtaagagactcaattatgaagaaaatccaaggttggaagcaagcaaccttttctcctgctggcaaagaaatcatgataaagtcagttgcaacatcaattccagcttatccaatgtcctgtttcaaatttccaaaatcctgcttatgtactcaaatcaactcagccttggcaaggttttggtggagtaatacatctgaaaatgggatttattggatggattggaatagcttgggagcttctaaatctgtggaagggttaggctttcgaattcctgaaagctttaatttggctctcttgggaaaacaagtttggcgcattcttcaaaatccggatgttctttgggttagaagtctcatggcccgatattttccaaacacctcattctggaatgctagaaaaggagggactccttcttggatttggtcaagtctgttaaaggtcagaaatctaattgttcaaggttcagcagttaagattggaaatggtattcaaactgaggtttggaatgataaatggcttcctcaacagttttctcctctatgtatcacttatggagagcaaccttttttttttgtgaaagacctgattgaaggtgatccttatttttggaatttatcccctgtctttcacatcttatcggttcaagatcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

244

Amino Acids

27.91

Weight (kDa)

9.65

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 51
AccIII TCCGGA 1 cut(s) 409
AclWI GGATC 1 cut(s) 671
AcsI RAATTY 3 cut(s) 206, 348, 691
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 252, 465
AgeI ACCGGT 1 cut(s) 54
AgsI TTSAA 6 cut(s) 205, 404, 539, 572, 671, 725
AjuI GAANNNNNNNTTGG 2 cut(s) 373, 405
AluBI AGCT 5 cut(s) 68, 185, 309, 317, 360
AluI AGCT 5 cut(s) 68, 185, 309, 317, 360
Alw26I GTCTC 2 cut(s) 81, 437
AlwI GGATC 1 cut(s) 671
Aor13HI TCCGGA 1 cut(s) 409
AoxI GGCC 2 cut(s) 34, 438
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 3 cut(s) 206, 348, 691
AsiGI ACCGGT 1 cut(s) 54
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 22, 686
AsuII TTCGAA 1 cut(s) 346
BanI GGYRCC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 81, 437
BfaI CTAG 1 cut(s) 474
BglII AGATCT 1 cut(s) 16
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 109, 246
BsaWI WCCGGW 2 cut(s) 54, 409
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 465
Bse118I RCCGGY 1 cut(s) 54
BseAI TCCGGA 1 cut(s) 409
BseDI CCNNGG 2 cut(s) 109, 246
BseGI GGATG 2 cut(s) 300, 418
BseLI CCNNNNNNNGG 2 cut(s) 252, 465
BseMII CTCAG 2 cut(s) 255, 567
BseRI GAGGAG 1 cut(s) 606
BseXI GCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 2 cut(s) 36, 440
BshNI GGYRCC 1 cut(s) 51
BshTI ACCGGT 1 cut(s) 54
BsiSI CCGG 2 cut(s) 55, 410
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 2 cut(s) 252, 465
BsmAI GTCTC 2 cut(s) 81, 437
BsmFI GGGAC 1 cut(s) 499
BsmI GAATGC 2 cut(s) 396, 475
BsnI GGCC 2 cut(s) 36, 440
Bsp119I TTCGAA 1 cut(s) 346
Bsp13I TCCGGA 1 cut(s) 409
Bsp143I GATC 3 cut(s) 16, 676, 727
BspANI GGCC 2 cut(s) 36, 440
BspCNI CTCAG 2 cut(s) 254, 568
BspEI TCCGGA 1 cut(s) 409
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 671
BspT104I TTCGAA 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 54
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 109, 246
BssMI GATC 3 cut(s) 16, 676, 727
BssT1I CCWWGG 2 cut(s) 109, 246
Bst4CI ACNGT 1 cut(s) 609
BstBI TTCGAA 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 123, 142
BstDEI CTNAG 2 cut(s) 241, 576
BstENI CCTNNNNNAGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 300, 418
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 3 cut(s) 19, 679, 730
BstMAI GTCTC 2 cut(s) 81, 437
BstMBI GATC 3 cut(s) 16, 676, 727
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 2 cut(s) 36, 440
BtsCI GGATG 2 cut(s) 300, 418
Cac8I GCNNGC 2 cut(s) 123, 142
CciI TCATGA 1 cut(s) 153
CfoI GCGC 1 cut(s) 396
Cfr10I RCCGGY 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 439
Csp6I GTAC 1 cut(s) 228
CspAI ACCGGT 1 cut(s) 54
CviAII CATG 2 cut(s) 154, 436
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 241, 576
DpnI GATC 3 cut(s) 18, 678, 729
DpnII GATC 3 cut(s) 16, 676, 727
Eco130I CCWWGG 2 cut(s) 109, 246
Eco147I AGGCCT 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 348
EcoT14I CCWWGG 2 cut(s) 109, 246
ErhI CCWWGG 2 cut(s) 109, 246
FaeI CATG 2 cut(s) 157, 439
FaiI YATR 7 cut(s) 81, 98, 155, 226, 437, 622, 633
FaqI GGGAC 1 cut(s) 499
FatI CATG 2 cut(s) 153, 435
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 2 cut(s) 307, 425
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 474
GlaI GCGC 1 cut(s) 395
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 36, 440
HapII CCGG 2 cut(s) 55, 410
HhaI GCGC 1 cut(s) 396
Hin1II CATG 2 cut(s) 157, 439
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 2 cut(s) 89, 487
HpaII CCGG 2 cut(s) 55, 410
HphI GGTGA 2 cut(s) 22, 686
Hpy188I TCNGA 2 cut(s) 277, 524
Hpy188III TCNNGA 5 cut(s) 154, 353, 410, 466, 725
HpyAV CCTTC 4 cut(s) 47, 326, 501, 665
HpyCH4III ACNGT 1 cut(s) 609
HpyCH4V TGCA 2 cut(s) 71, 170
HpyF3I CTNAG 2 cut(s) 241, 576
Hsp92II CATG 2 cut(s) 157, 439
HspAI GCGC 1 cut(s) 394
Kpn2I TCCGGA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 16, 676, 727
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 1 cut(s) 55
MaeI CTAG 1 cut(s) 474
MalI GATC 3 cut(s) 18, 678, 729
MboI GATC 3 cut(s) 16, 676, 727
MboII GAAGA 2 cut(s) 112, 392
MflI RGATCY 1 cut(s) 16
MluCI AATT 9 cut(s) 5, 45, 93, 177, 206, 348, 364, 531, 691
MlyI GAGTC 2 cut(s) 83, 481
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 5 cut(s) 469, 476, 571, 612, 627
MroI TCCGGA 1 cut(s) 409
MseI TTAA 3 cut(s) 363, 515, 552
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 2 cut(s) 55, 410
Mva1269I GAATGC 2 cut(s) 396, 475
NdeII GATC 3 cut(s) 16, 676, 727
NlaIII CATG 2 cut(s) 157, 439
NlaIV GGNNCC 1 cut(s) 53
NspV TTCGAA 1 cut(s) 346
PagI TCATGA 1 cut(s) 153
PceI AGGCCT 1 cut(s) 36
PctI GAATGC 2 cut(s) 396, 475
PinAI ACCGGT 1 cut(s) 54
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 2 cut(s) 83, 481
PpsI GAGTC 2 cut(s) 83, 481
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 439
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SaqAI TTAA 3 cut(s) 363, 515, 552
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 16, 676, 727
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 2 cut(s) 83, 481
SfuI TTCGAA 1 cut(s) 346
Sse9I AATT 9 cut(s) 5, 45, 93, 177, 206, 348, 364, 531, 691
SseBI AGGCCT 1 cut(s) 36
SspMI CTAG 1 cut(s) 474
StuI AGGCCT 1 cut(s) 36
StyI CCWWGG 2 cut(s) 109, 246
TaaI ACNGT 1 cut(s) 609
TaqI TCGA 1 cut(s) 346
TasI AATT 9 cut(s) 5, 45, 93, 177, 206, 348, 364, 531, 691
TatI WGTACW 1 cut(s) 227
Tru1I TTAA 3 cut(s) 363, 515, 552
Tru9I TTAA 3 cut(s) 363, 515, 552
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 17, 113
XagI CCTNNNNNAGG 1 cut(s) 250
XapI RAATTY 3 cut(s) 206, 348, 691
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.