Rmu_sc0004904.1_g000022

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004904.1
OG0000194
Physical Location & Seq
Forward (+)
100574 .. 101026
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004904.1_g000022.1.cds

Sequence Viewer

Length: 453 bp
atgtgtgagctcttaaacatggctgtggtagacaatccagggaaatacttagggctcccaactgtttggggccgatcaaagagagaggctcttgtctacataaaggagagagtaaaaaggaagatagatggctggaagcagaaatctttgactatggcagggagggagactttgataaaatctgttgcattggctatttcctcgtacccaatgtcatgctttaagtttcctaaaggcatttgtgaggatattaattctgctttgggaaatttctggtggggagcatcatctacaggccagaaacttcactggaaaaattggaacttcatgggattgcccaaatctggtgggggaatgggttttcgtgatcttcaacattttaatatggctctcctagtcaaacaatgctggagactcttcaggaacccaattctctttgggcccggtttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

150

Amino Acids

17.01

Weight (kDa)

9.98

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 30, 96
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 403
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 1 cut(s) 374
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 2 cut(s) 161, 406
AoxI GGCC 3 cut(s) 70, 295, 440
ApaI GGGCCC 1 cut(s) 444
ApoI RAATTY 1 cut(s) 268
AseI ATTAAT 1 cut(s) 252
AspS9I GGNCC 3 cut(s) 70, 440, 441
AsuC2I CCSGG 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 444
BanII GRGCYC 3 cut(s) 12, 57, 444
Bbv12I GWGCWC 1 cut(s) 12
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 39
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 161, 406
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 291
Bme1390I CCNGG 2 cut(s) 39, 444
BmgT120I GGNCC 3 cut(s) 70, 440, 441
BmiI GGNNCC 4 cut(s) 56, 71, 425, 442
BmrFI CCNGG 2 cut(s) 39, 444
BmsI GCATC 1 cut(s) 293
BplI GAGNNNNNCTC 2 cut(s) 73, 105
BpmI CTGGAG 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 444
BshFI GGCC 3 cut(s) 72, 297, 442
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 1 cut(s) 444
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 2 cut(s) 161, 406
BsnI GGCC 3 cut(s) 72, 297, 442
Bsp120I GGGCCC 1 cut(s) 440
Bsp1286I GDGCHC 3 cut(s) 12, 57, 444
Bsp143I GATC 2 cut(s) 74, 367
BspANI GGCC 3 cut(s) 72, 297, 442
BspLI GGNNCC 4 cut(s) 56, 71, 425, 442
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 2 cut(s) 74, 367
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 49
BstKTI GATC 2 cut(s) 77, 370
BstMAI GTCTC 2 cut(s) 161, 406
BstMBI GATC 2 cut(s) 74, 367
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 37, 442
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 444
BstXI CCANNNNNNTGG 1 cut(s) 66
BsuRI GGCC 3 cut(s) 72, 297, 442
BtsIMutI CAGTG 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 70, 440, 441
Csp6I GTAC 1 cut(s) 205
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 3 cut(s) 19, 216, 328
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 76, 369
DpnII GATC 2 cut(s) 74, 367
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Ecl136II GAGCTC 1 cut(s) 10
Eco24I GRGCYC 3 cut(s) 12, 57, 444
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 403
EcoICRI GAGCTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 37
EcoT38I GRGCYC 3 cut(s) 12, 57, 444
FaeI CATG 3 cut(s) 22, 219, 331
FaiI YATR 7 cut(s) 20, 101, 155, 217, 329, 386, 451
FatI CATG 3 cut(s) 18, 215, 327
FblI GTMKAC 2 cut(s) 30, 96
FriOI GRGCYC 3 cut(s) 12, 57, 444
FspBI CTAG 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 430
HaeIII GGCC 3 cut(s) 72, 297, 442
HapII CCGG 1 cut(s) 444
Hin1II CATG 3 cut(s) 22, 219, 331
HinfI GANTC 1 cut(s) 414
HpaII CCGG 1 cut(s) 444
Hpy166II GTNNAC 2 cut(s) 31, 97
Hpy188III TCNNGA 2 cut(s) 365, 421
Hpy8I GTNNAC 2 cut(s) 31, 97
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 49
Hsp92II CATG 3 cut(s) 22, 219, 331
Kzo9I GATC 2 cut(s) 74, 367
LmnI GCTCC 2 cut(s) 60, 281
LweI GCATC 1 cut(s) 293
MaeI CTAG 1 cut(s) 395
MalI GATC 2 cut(s) 76, 369
MboI GATC 2 cut(s) 74, 367
MboII GAAGA 3 cut(s) 133, 362, 409
MhlI GDGCHC 3 cut(s) 12, 57, 444
MluCI AATT 4 cut(s) 253, 268, 316, 429
MlyI GAGTC 1 cut(s) 408
MnlI CCTC 4 cut(s) 79, 156, 211, 238
MseI TTAA 4 cut(s) 14, 222, 252, 381
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 2 cut(s) 39, 444
MvaI CCWGG 1 cut(s) 39
NciI CCSGG 1 cut(s) 444
NdeII GATC 2 cut(s) 74, 367
NlaIII CATG 3 cut(s) 22, 219, 331
NlaIV GGNNCC 4 cut(s) 56, 71, 425, 442
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
PshBI ATTAAT 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 4 cut(s) 56, 71, 425, 442
PspOMI GGGCCC 1 cut(s) 440
PspPI GGNCC 3 cut(s) 70, 440, 441
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 14, 222, 252, 381
Sau3AI GATC 2 cut(s) 74, 367
Sau96I GGNCC 3 cut(s) 70, 440, 441
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 2 cut(s) 39, 444
SduI GDGCHC 3 cut(s) 12, 57, 444
SetI ASST 1 cut(s) 12
SfaNI GCATC 1 cut(s) 293
SfcI CTRYAG 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 4 cut(s) 253, 268, 316, 429
SspMI CTAG 1 cut(s) 395
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 37, 442
TaaI ACNGT 1 cut(s) 64
TasI AATT 4 cut(s) 253, 268, 316, 429
Tru1I TTAA 4 cut(s) 14, 222, 252, 381
Tru9I TTAA 4 cut(s) 14, 222, 252, 381
TscAI CASTG 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 316
TspRI CASTG 1 cut(s) 314
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 1 cut(s) 268
XmiI GTMKAC 2 cut(s) 30, 96
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.