FvH4_4g06793

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000194
Physical Location & Seq
Forward (+)
6124781 .. 6127141
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06793.t1

Sequence Viewer

Length: 1392 bp
ATGAAATTAATTGGCATCTATTGTGAAGCTTCTAGGCAGCTGGTTAACCTAGAAAAGTCCAATTTGTATTGCACTCCTTGCACTTCTTCAGATATTGTCACTCAGTTCTGTGAGATTCTTGGTGTCCCAAATAATGTTAATCCTGGACGTTATCTGGGGTTGCCTACAATTTGGGGTAGATCAAAAAAGGCCTCTCTCTCTTTTGTCAAAGCTCGGCTCATGGATAAGATACAAAGCTGGAAATTGGGCACTCTCTCTATGGCTGGTTGGGAAATTCTCATCAAATCTGTAGCTTTGGCAGTTCCTACTTTTCCAATGCACCGTTTCAAATTTCCATCTACCCTTTGCACAGAAATTGATTCTGTAATTGCTAACTTTTGGTGGGGTCAAAAAGATAGCGAATTTAAGATTCATTGGAAAAGTTGGGCCTTTCTGGGGCAGCCTAAGGATTGTGGTGGGTTGGGTTTCCGAAACCTGAATGATTTCAATATTGCTTTATTGGCTAAGCAGGTTTGGCGTTTGTTCTCAAACCCCGACTCGTTTTGTGCAAAGATTATTAAAAGAATCTATTATCCCAATTGTTCTATACTCAATGCCGGGAAGGGTTCTAGAGCTTCTAGGGCATGGACCAGCCTCTTGGAAGGGAAAGCTTTAATTGTGGAAGGTTCTAGGTGGCAAATTGGCAATGGGTGTCAAGTTGATATTTGGTCTGATAGATGGATTTTGAATGCTAATCCGGGGTACCTAAGACCTTTGCTCCCTATTTCAAGTTCCAGGCCTAAAATGGTGGAGGAGCTTATCGATGGGACACCAACAGTTGGTGTTTGGATGAGATCAGTGACTTACTTTCTGAAGAGGAGAGGCTTCAAATTGAGTTATTATTGTTTGGGGATGAAAGCATGTCAGACAGGACACATCAAGATAAATTTTGATGCAACTTGGGCAATGGATACTCACCTAGTAGGTATTGGAGTTGTTGCAAGGAATTTCCATGGTGATTTAATTGATGGTGTTCATACGACTTGTCGAGCGGGTTCGGCTCTTGAAGCGGAAGCTCGCGCGGGTATTGAAGCTTGTTCTCTTGCCGAGAAGCTCACCCCTTTTCCAATCATCATCGAATCTGATTCGAAATGCTTGATTGATGCGATCAATTCTCCCTCCAATTGCAATATCTGGAGCATCTACCCTGCTGTTGCAAAGATCAAGAACTCTCCCTCTTTCCGGCAACGTTTTGTTTGGTCTTGGATCTCAAGGAAAGCGAATTCGACGGCAGATCACCTCGCCTCGCTTACGGTGCGGAGAATGTGCCCGGACGTCTGGATTGACCGTCTGCCATCCTCCCTTGTTGGTATTCTCTCGAGAGATGGGTTGCCTTGCCCTCCATCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

464

Amino Acids

51.73

Weight (kDa)

9.36

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 309 - 429 1.1e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1317
Acc36I ACCTGC 1 cut(s) 499
Acc65I GGTACC 1 cut(s) 741
AccB1I GGYRCC 1 cut(s) 741
AccB7I CCANNNNNTGG 1 cut(s) 818
AccBSI CCGCTC 1 cut(s) 1031
AccII CGCG 2 cut(s) 1059, 1061
AciI CCGC 4 cut(s) 1031, 1049, 1061, 1297
AclI AACGTT 1 cut(s) 1228
AclWI GGATC 1 cut(s) 1253
AcsI RAATTY 6 cut(s) 273, 329, 401, 925, 985, 1261
AcuI CTGAAG 2 cut(s) 72, 872
AcyI GRCGYC 1 cut(s) 1314
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 3 cut(s) 435, 818, 1221
AgsI TTSAA 7 cut(s) 328, 487, 727, 768, 868, 1046, 1070
AjnI CCWGG 2 cut(s) 142, 773
AlwI GGATC 1 cut(s) 1253
Ama87I CYCGRG 1 cut(s) 1357
AoxI GGCC 3 cut(s) 189, 426, 776
ApeKI GCWGC 2 cut(s) 37, 439
ApoI RAATTY 6 cut(s) 273, 329, 401, 925, 985, 1261
AseI ATTAAT 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 482
Asp718I GGTACC 1 cut(s) 741
AspLEI GCGC 1 cut(s) 1061
AspS9I GGNCC 2 cut(s) 426, 627
AsuC2I CCSGG 3 cut(s) 598, 738, 1310
AsuHPI GGTGA 4 cut(s) 947, 1007, 1087, 1268
AsuII TTCGAA 1 cut(s) 1127
AvaI CYCGRG 1 cut(s) 1357
AvaII GGWCC 1 cut(s) 627
AxyI CCTNAGG 1 cut(s) 444
BaeGI GKGCMC 2 cut(s) 251, 1310
BanI GGYRCC 1 cut(s) 741
BbvI GCAGC 2 cut(s) 49, 451
BccI CCATC 7 cut(s) 343, 711, 797, 1001, 1342, 1358, 1390
BceAI ACGGC 1 cut(s) 1284
BciT130I CCWGG 2 cut(s) 144, 775
BciVI GTATCC 1 cut(s) 943
BcnI CCSGG 3 cut(s) 598, 738, 1310
BfaI CTAG 6 cut(s) 33, 50, 609, 618, 669, 959
BfmI CTRYAG 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 499
BfuI GTATCC 1 cut(s) 943
BisI GCNGC 2 cut(s) 38, 440
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 2 cut(s) 39, 441
Bme1390I CCNGG 5 cut(s) 144, 598, 738, 775, 1310
Bme18I GGWCC 1 cut(s) 627
BmeT110I CYCGRG 1 cut(s) 1357
BmgT120I GGNCC 2 cut(s) 426, 627
BmiI GGNNCC 1 cut(s) 743
BmrFI CCNGG 5 cut(s) 144, 598, 738, 775, 1310
BmsI GCATC 4 cut(s) 24, 922, 1132, 1188
BpmI CTGGAG 1 cut(s) 1195
Bpu1102I GCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 1127
BpuEI CTTGAG 1 cut(s) 1234
BpuMI CCSGG 3 cut(s) 598, 738, 1310
Bsa29I ATCGAT 1 cut(s) 801
BsaHI GRCGYC 1 cut(s) 1314
BsaJI CCNNGG 2 cut(s) 737, 991
BsaXI ACNNNNNCTCC 2 cut(s) 741, 771
Bsc4I CCNNNNNNNGG 3 cut(s) 435, 818, 1221
Bse21I CCTNAGG 1 cut(s) 444
Bse3DI GCAATG 2 cut(s) 691, 951
BseBI CCWGG 2 cut(s) 144, 775
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 2 cut(s) 737, 991
BseGI GGATG 3 cut(s) 834, 897, 1334
BseLI CCNNNNNNNGG 3 cut(s) 435, 818, 1221
BseMI GCAATG 2 cut(s) 691, 951
BseMII CTCAG 1 cut(s) 116
BseRI GAGGAG 2 cut(s) 806, 871
BseSI GKGCMC 2 cut(s) 251, 1310
BseXI GCAGC 2 cut(s) 49, 451
Bsh1236I CGCG 2 cut(s) 1059, 1061
BshFI GGCC 3 cut(s) 191, 428, 778
BshNI GGYRCC 1 cut(s) 741
BshVI ATCGAT 1 cut(s) 801
BsiHKCI CYCGRG 1 cut(s) 1357
BsiSI CCGG 4 cut(s) 597, 737, 1222, 1310
BslFI GGGAC 2 cut(s) 110, 820
BslI CCNNNNNNNGG 3 cut(s) 435, 818, 1221
BsmFI GGGAC 2 cut(s) 110, 820
BsmI GAATGC 1 cut(s) 733
BsnI GGCC 3 cut(s) 191, 428, 778
BsoBI CYCGRG 1 cut(s) 1357
Bsp119I TTCGAA 1 cut(s) 1127
Bsp1286I GDGCHC 2 cut(s) 251, 1310
Bsp143I GATC 6 cut(s) 179, 833, 1146, 1200, 1245, 1273
Bsp1720I GCTNAGC 1 cut(s) 504
Bsp19I CCATGG 1 cut(s) 991
BspACI CCGC 4 cut(s) 1031, 1049, 1061, 1297
BspANI GGCC 3 cut(s) 191, 428, 778
BspCNI CTCAG 1 cut(s) 115
BspDI ATCGAT 1 cut(s) 801
BspFNI CGCG 2 cut(s) 1059, 1061
BspHI TCATGA 1 cut(s) 1388
BspLI GGNNCC 1 cut(s) 743
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 1 cut(s) 1253
BspT104I TTCGAA 1 cut(s) 1127
BspT107I GGYRCC 1 cut(s) 741
BsrBI CCGCTC 1 cut(s) 1031
BsrDI GCAATG 2 cut(s) 691, 951
BssECI CCNNGG 2 cut(s) 737, 991
BssMI GATC 6 cut(s) 179, 833, 1146, 1200, 1245, 1273
BssNI GRCGYC 1 cut(s) 1314
BssT1I CCWWGG 1 cut(s) 991
Bst2UI CCWGG 2 cut(s) 144, 775
Bst4CI ACNGT 4 cut(s) 323, 817, 1294, 1328
Bst6I CTCTTC 1 cut(s) 848
BstACI GRCGYC 1 cut(s) 1314
BstAPI GCANNNNNTGC 1 cut(s) 78
BstBI TTCGAA 1 cut(s) 1127
BstC8I GCNNGC 1 cut(s) 1057
BstDEI CTNAG 4 cut(s) 102, 444, 504, 746
BstDSI CCRYGG 1 cut(s) 991
BstF5I GGATG 3 cut(s) 834, 897, 1334
BstFNI CGCG 2 cut(s) 1059, 1061
BstHHI GCGC 1 cut(s) 1061
BstKTI GATC 6 cut(s) 182, 836, 1149, 1203, 1248, 1276
BstMBI GATC 6 cut(s) 179, 833, 1146, 1200, 1245, 1273
BstMWI GCNNNNNNNGC 8 cut(s) 78, 500, 514, 620, 941, 1037, 1046, 1294
BstNI CCWGG 2 cut(s) 144, 775
BstNSI RCATGY 1 cut(s) 903
BstSCI CCNGG 5 cut(s) 142, 596, 736, 773, 1308
BstSFI CTRYAG 1 cut(s) 288
BstSLI GKGCMC 2 cut(s) 251, 1310
BstUI CGCG 2 cut(s) 1059, 1061
BstV1I GCAGC 2 cut(s) 49, 451
BstX2I RGATCY 1 cut(s) 1245
BstXI CCANNNNNNTGG 1 cut(s) 637
BstYI RGATCY 1 cut(s) 1245
Bsu15I ATCGAT 1 cut(s) 801
Bsu36I CCTNAGG 1 cut(s) 444
BsuI GTATCC 1 cut(s) 943
BsuRI GGCC 3 cut(s) 191, 428, 778
BsuTUI ATCGAT 1 cut(s) 801
BtgI CCRYGG 1 cut(s) 991
BtsCI GGATG 3 cut(s) 834, 897, 1334
BtsIMutI CAGTG 1 cut(s) 843
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 1057
CciI TCATGA 1 cut(s) 1388
CfoI GCGC 1 cut(s) 1061
Cfr13I GGNCC 2 cut(s) 426, 627
ClaI ATCGAT 1 cut(s) 801
Csp6I GTAC 1 cut(s) 742
CviAII CATG 5 cut(s) 220, 624, 900, 992, 1389
CviQI GTAC 1 cut(s) 742
DdeI CTNAG 4 cut(s) 102, 444, 504, 746
DpnI GATC 6 cut(s) 181, 835, 1148, 1202, 1247, 1275
DpnII GATC 6 cut(s) 179, 833, 1146, 1200, 1245, 1273
Eam1104I CTCTTC 1 cut(s) 848
EarI CTCTTC 1 cut(s) 848
Eco130I CCWWGG 1 cut(s) 991
Eco147I AGGCCT 2 cut(s) 191, 778
Eco47I GGWCC 1 cut(s) 627
Eco57I CTGAAG 2 cut(s) 72, 872
Eco81I CCTNAGG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 1357
EcoRI GAATTC 1 cut(s) 1261
EcoRII CCWGG 2 cut(s) 142, 773
EcoT14I CCWWGG 1 cut(s) 991
ErhI CCWWGG 1 cut(s) 991
FaeI CATG 5 cut(s) 223, 627, 903, 995, 1392
FaiI YATR 8 cut(s) 221, 260, 587, 625, 901, 993, 1017, 1390
FaqI GGGAC 2 cut(s) 110, 820
FatI CATG 5 cut(s) 219, 623, 899, 991, 1388
FauI CCCGC 2 cut(s) 1024, 1054
Fnu4HI GCNGC 2 cut(s) 38, 440
FokI GGATG 3 cut(s) 841, 904, 1321
Fsp4HI GCNGC 2 cut(s) 38, 440
FspBI CTAG 6 cut(s) 33, 50, 609, 618, 669, 959
GlaI GCGC 1 cut(s) 1060
GluI GCNGC 2 cut(s) 38, 440
GsuI CTGGAG 1 cut(s) 1195
HaeIII GGCC 3 cut(s) 191, 428, 778
HapII CCGG 4 cut(s) 597, 737, 1222, 1310
HhaI GCGC 1 cut(s) 1061
Hin1I GRCGYC 1 cut(s) 1314
Hin1II CATG 5 cut(s) 223, 627, 903, 995, 1392
Hin6I GCGC 1 cut(s) 1059
HinP1I GCGC 1 cut(s) 1059
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 3 cut(s) 27, 648, 1071
HinfI GANTC 7 cut(s) 115, 359, 409, 536, 564, 1118, 1124
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 4 cut(s) 597, 737, 1222, 1310
HphI GGTGA 4 cut(s) 947, 1007, 1087, 1268
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 6 cut(s) 91, 470, 712, 852, 906, 1123
Hpy188III TCNNGA 9 cut(s) 609, 919, 1043, 1174, 1204, 1318, 1357, 1359, 1389
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 1 cut(s) 1270
HpyAV CCTTC 3 cut(s) 595, 635, 656
HpyCH4III ACNGT 4 cut(s) 323, 817, 1294, 1328
HpyCH4IV ACGT 3 cut(s) 148, 1228, 1314
HpyCH4V TGCA 9 cut(s) 72, 81, 319, 348, 548, 935, 980, 1167, 1196
HpyF10VI GCNNNNNNNGC 8 cut(s) 78, 500, 514, 620, 941, 1037, 1046, 1294
HpyF3I CTNAG 4 cut(s) 102, 444, 504, 746
HpySE526I ACGT 3 cut(s) 148, 1228, 1314
Hsp92I GRCGYC 1 cut(s) 1314
Hsp92II CATG 5 cut(s) 223, 627, 903, 995, 1392
HspAI GCGC 1 cut(s) 1059
KpnI GGTACC 1 cut(s) 745
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 6 cut(s) 179, 833, 1146, 1200, 1245, 1273
LmnI GCTCC 3 cut(s) 762, 793, 1176
Lsp1109I GCAGC 2 cut(s) 49, 451
LweI GCATC 4 cut(s) 24, 922, 1132, 1188
MaeI CTAG 6 cut(s) 33, 50, 609, 618, 669, 959
MaeII ACGT 3 cut(s) 148, 1228, 1314
MaeIII GTNAC 2 cut(s) 97, 838
MalI GATC 6 cut(s) 181, 835, 1148, 1202, 1247, 1275
MbiI CCGCTC 1 cut(s) 1031
MboI GATC 6 cut(s) 179, 833, 1146, 1200, 1245, 1273
MboII GAAGA 3 cut(s) 78, 865, 1377
MfeI CAATTG 2 cut(s) 577, 1162
MflI RGATCY 1 cut(s) 1245
MhlI GDGCHC 2 cut(s) 251, 1310
MlyI GAGTC 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 482
MseI TTAA 7 cut(s) 8, 45, 138, 405, 558, 653, 1001
MslI CAYNNNNRTG 1 cut(s) 1387
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 4 cut(s) 597, 737, 1222, 1310
MspR9I CCNGG 5 cut(s) 144, 598, 738, 775, 1310
MunI CAATTG 2 cut(s) 577, 1162
Mva1269I GAATGC 1 cut(s) 733
MvaI CCWGG 2 cut(s) 144, 775
MvnI CGCG 2 cut(s) 1059, 1061
MwoI GCNNNNNNNGC 8 cut(s) 78, 500, 514, 620, 941, 1037, 1046, 1294
NciI CCSGG 3 cut(s) 598, 738, 1310
NcoI CCATGG 1 cut(s) 991
NdeII GATC 6 cut(s) 179, 833, 1146, 1200, 1245, 1273
NlaIII CATG 5 cut(s) 223, 627, 903, 995, 1392
NlaIV GGNNCC 1 cut(s) 743
NmeAIII GCCGAG 2 cut(s) 193, 1111
NmuCI GTSAC 2 cut(s) 97, 838
NspI RCATGY 1 cut(s) 903
NspV TTCGAA 1 cut(s) 1127
PaeR7I CTCGAG 1 cut(s) 1357
PagI TCATGA 1 cut(s) 1388
PceI AGGCCT 2 cut(s) 191, 778
PctI GAATGC 1 cut(s) 733
PdmI GAANNNNTTC 1 cut(s) 482
PfeI GAWTC 6 cut(s) 115, 359, 409, 564, 1118, 1124
PflMI CCANNNNNTGG 1 cut(s) 818
PfoI TCCNGGA 1 cut(s) 142
PkrI GCNGC 2 cut(s) 39, 441
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
PshBI ATTAAT 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 1228
Psp6I CCWGG 2 cut(s) 142, 773
PspGI CCWGG 2 cut(s) 142, 773
PspN4I GGNNCC 1 cut(s) 743
PspPI GGNCC 2 cut(s) 426, 627
PsuI RGATCY 1 cut(s) 1245
PvuII CAGCTG 1 cut(s) 40
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
RseI CAYNNNNRTG 1 cut(s) 1387
SaqAI TTAA 7 cut(s) 8, 45, 138, 405, 558, 653, 1001
SatI GCNGC 2 cut(s) 38, 440
Sau3AI GATC 6 cut(s) 179, 833, 1146, 1200, 1245, 1273
Sau96I GGNCC 2 cut(s) 426, 627
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 5 cut(s) 144, 598, 738, 775, 1310
SduI GDGCHC 2 cut(s) 251, 1310
SfaNI GCATC 4 cut(s) 24, 922, 1132, 1188
SfcI CTRYAG 1 cut(s) 288
Sfr274I CTCGAG 1 cut(s) 1357
SfuI TTCGAA 1 cut(s) 1127
SinI GGWCC 1 cut(s) 627
SlaI CTCGAG 1 cut(s) 1357
SmiMI CAYNNNNRTG 1 cut(s) 1387
SmlI CTYRAG 2 cut(s) 1249, 1357
SmoI CTYRAG 2 cut(s) 1249, 1357
SseBI AGGCCT 2 cut(s) 191, 778
SsiI CCGC 4 cut(s) 1031, 1049, 1061, 1297
SspI AATATT 1 cut(s) 490
SspMI CTAG 6 cut(s) 33, 50, 609, 618, 669, 959
StuI AGGCCT 2 cut(s) 191, 778
StyD4I CCNGG 5 cut(s) 142, 596, 736, 773, 1308
StyI CCWWGG 1 cut(s) 991
TaaI ACNGT 4 cut(s) 323, 817, 1294, 1328
TaiI ACGT 3 cut(s) 151, 1231, 1317
TaqI TCGA 6 cut(s) 801, 1027, 1116, 1127, 1265, 1358
TfiI GAWTC 6 cut(s) 115, 359, 409, 564, 1118, 1124
Tru1I TTAA 7 cut(s) 8, 45, 138, 405, 558, 653, 1001
Tru9I TTAA 7 cut(s) 8, 45, 138, 405, 558, 653, 1001
TscAI CASTG 1 cut(s) 843
TseFI GTSAC 2 cut(s) 97, 838
TseI GCWGC 2 cut(s) 37, 439
Tsp45I GTSAC 2 cut(s) 97, 838
TspDTI ATGAA 5 cut(s) 17, 401, 908, 1004, 1377
TspRI CASTG 1 cut(s) 843
Van91I CCANNNNNTGG 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 627
VspI ATTAAT 1 cut(s) 8
XapI RAATTY 6 cut(s) 273, 329, 401, 925, 985, 1261
XbaI TCTAGA 1 cut(s) 608
XceI RCATGY 1 cut(s) 903
XcmI CCANNNNNNNNNTGG 1 cut(s) 781
XhoI CTCGAG 1 cut(s) 1357
XmnI GAANNNNTTC 1 cut(s) 482
XspI CTAG 6 cut(s) 33, 50, 609, 618, 669, 959
ZraI GACGTC 1 cut(s) 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.