Rmu_sc0003627.1_g000005

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003627.1
OG0000194
Physical Location & Seq
Forward (+)
10351 .. 11118
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003627.1_g000005.1.cds

Sequence Viewer

Length: 768 bp
atgaaatcggtcatttcggctatccctgcctatcctatggcagtatttctattcactgatgggctgtgtaaggagattgattctcgaattgtgaacttttggtggggacagactgatatggggggtaaggtgcattggttgagttgggaaaagcttggattgcctaaggaggagggcggtatgggtttcaggtgtctgcgagatttcaatttagccctccttgccaaagtagggtggagaattattcaacaaccagaagctttatgggttcaagtgctcaagggattatattttcctgattgtgatttcttctcagcttctaaaggccccagagcttcgtgggcttggagtagcattctggagggaagaaatttattaactgattgtgctttgtggcaagtactcaatggggagtccattagtacttggaaagataaatggattccagggattttaggtgggagactgcatgctgctcatctgtatgcttctgagtttgattcttttcagagggttgcagacttggttgattggtcttcaacttcttggaatctggatcccattgctcagcatttgacacctgctgaggttgttgctattgagtccatcccattgtcctctacttgggaacctgataagttagtctggccttttgagaaatgtggttcatattcagtcaggtctgggtatcatgtgcagcatggagggagaagtaaggcatcattgcaatcagctcactcttcacatattgttgctcctatagtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

255

Amino Acids

28.59

Weight (kDa)

6.44

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 589
Acc36I ACCTGC 1 cut(s) 589
AciI CCGC 1 cut(s) 177
AclWI GGATC 2 cut(s) 551, 564
AcsI RAATTY 1 cut(s) 370
AfaI GTAC 2 cut(s) 402, 424
AfiI CCNNNNNNNGG 2 cut(s) 231, 624
AgsI TTSAA 4 cut(s) 208, 248, 272, 540
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 5 cut(s) 154, 260, 317, 335, 734
AluI AGCT 5 cut(s) 154, 260, 317, 335, 734
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 457
AlwI GGATC 2 cut(s) 551, 564
AoxI GGCC 2 cut(s) 325, 647
ApeKI GCWGC 2 cut(s) 473, 697
ApoI RAATTY 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 326
AxyI CCTNAGG 1 cut(s) 165
BamHI GGATCC 1 cut(s) 556
BbsI GAAGAC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 2 cut(s) 460, 709
BccI CCATC 2 cut(s) 53, 614
BciT130I CCWGG 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 457
BfmI CTRYAG 1 cut(s) 759
BfuAI ACCTGC 1 cut(s) 589
BisI GCNGC 2 cut(s) 474, 698
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 2 cut(s) 475, 699
BmcAI AGTACT 2 cut(s) 402, 424
Bme1390I CCNGG 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 3 cut(s) 328, 558, 630
BmrFI CCNGG 1 cut(s) 447
BmsI GCATC 1 cut(s) 728
BpiI GAAGAC 1 cut(s) 528
BpmI CTGGAG 1 cut(s) 380
Bpu10I CCTNAGC 1 cut(s) 585
Bpu1102I GCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 446
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 624
Bse21I CCTNAGG 1 cut(s) 165
Bse3DI GCAATG 2 cut(s) 561, 722
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 1 cut(s) 606
BseLI CCNNNNNNNGG 2 cut(s) 231, 624
BseMI GCAATG 2 cut(s) 561, 722
BseMII CTCAG 4 cut(s) 327, 483, 576, 581
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 460, 709
BsgI GTGCAG 1 cut(s) 716
BshFI GGCC 2 cut(s) 327, 649
BsiHKAI GWGCWC 1 cut(s) 279
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 231, 624
BsmAI GTCTC 1 cut(s) 457
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 2 cut(s) 327, 649
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 1 cut(s) 556
Bsp1720I GCTNAGC 1 cut(s) 567
BspACI CCGC 1 cut(s) 177
BspANI GGCC 2 cut(s) 327, 649
BspCNI CTCAG 4 cut(s) 326, 484, 577, 580
BspLI GGNNCC 3 cut(s) 328, 558, 630
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 2 cut(s) 551, 564
BsrDI GCAATG 2 cut(s) 561, 722
BssECI CCNNGG 1 cut(s) 446
BssMI GATC 1 cut(s) 556
Bst2UI CCWGG 1 cut(s) 447
Bst6I CTCTTC 1 cut(s) 745
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 5 cut(s) 165, 313, 492, 567, 585
BstF5I GGATG 1 cut(s) 606
BstKTI GATC 1 cut(s) 559
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 1 cut(s) 556
BstMWI GCNNNNNNNGC 4 cut(s) 26, 160, 221, 341
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 759
BstV1I GCAGC 2 cut(s) 460, 709
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 2 cut(s) 327, 649
BtsCI GGATG 1 cut(s) 606
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 401, 423
CviAII CATG 3 cut(s) 470, 692, 701
CviQI GTAC 2 cut(s) 401, 423
DdeI CTNAG 5 cut(s) 165, 313, 492, 567, 585
DpnI GATC 1 cut(s) 558
DpnII GATC 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 745
EarI CTCTTC 1 cut(s) 745
Eco81I CCTNAGG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 445
FaeI CATG 3 cut(s) 473, 695, 704
FaqI GGGAC 1 cut(s) 120
FatI CATG 3 cut(s) 469, 691, 700
Fnu4HI GCNGC 2 cut(s) 474, 698
FokI GGATG 1 cut(s) 593
Fsp4HI GCNGC 2 cut(s) 474, 698
GluI GCNGC 2 cut(s) 474, 698
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 2 cut(s) 327, 649
Hin1II CATG 3 cut(s) 473, 695, 704
HindIII AAGCTT 2 cut(s) 152, 258
HinfI GANTC 6 cut(s) 80, 413, 442, 500, 550, 602
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 493, 510
Hpy188III TCNNGA 4 cut(s) 84, 296, 359, 554
Hpy8I GTNNAC 1 cut(s) 94
HpyCH4V TGCA 5 cut(s) 133, 469, 518, 697, 727
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 160, 221, 341
HpyF3I CTNAG 5 cut(s) 165, 313, 492, 567, 585
Hsp92II CATG 3 cut(s) 473, 695, 704
Kzo9I GATC 1 cut(s) 556
LmnI GCTCC 1 cut(s) 760
Lsp1109I GCAGC 2 cut(s) 460, 709
LweI GCATC 1 cut(s) 728
MalI GATC 1 cut(s) 558
MboI GATC 1 cut(s) 556
MboII GAAGA 4 cut(s) 301, 378, 528, 732
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 4 cut(s) 87, 208, 240, 370
MlyI GAGTC 2 cut(s) 422, 611
MnlI CCTC 8 cut(s) 163, 166, 227, 355, 504, 580, 628, 698
MseI TTAA 2 cut(s) 377, 766
MslI CAYNNNNRTG 1 cut(s) 483
MspR9I CCNGG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 354
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 4 cut(s) 26, 160, 221, 341
NdeII GATC 1 cut(s) 556
NlaIII CATG 3 cut(s) 473, 695, 704
NlaIV GGNNCC 3 cut(s) 328, 558, 630
NspI RCATGY 1 cut(s) 473
PaeI GCATGC 1 cut(s) 473
PaqCI CACCTGC 1 cut(s) 589
PctI GAATGC 1 cut(s) 354
PfeI GAWTC 4 cut(s) 80, 442, 500, 550
PkrI GCNGC 2 cut(s) 475, 699
PleI GAGTC 2 cut(s) 421, 610
PpsI GAGTC 2 cut(s) 421, 610
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 3 cut(s) 328, 558, 630
PspPI GGNCC 1 cut(s) 326
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 2 cut(s) 402, 424
RsaNI GTAC 2 cut(s) 401, 423
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 2 cut(s) 377, 766
SatI GCNGC 2 cut(s) 474, 698
Sau3AI GATC 1 cut(s) 556
Sau96I GGNCC 1 cut(s) 326
ScaI AGTACT 2 cut(s) 402, 424
SchI GAGTC 2 cut(s) 422, 611
ScrFI CCNGG 1 cut(s) 447
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 1 cut(s) 728
SfcI CTRYAG 1 cut(s) 759
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SphI GCATGC 1 cut(s) 473
Sse9I AATT 4 cut(s) 87, 208, 240, 370
SsiI CCGC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 445
TaqI TCGA 1 cut(s) 85
TasI AATT 4 cut(s) 87, 208, 240, 370
TatI WGTACW 2 cut(s) 400, 422
TfiI GAWTC 4 cut(s) 80, 442, 500, 550
Tru1I TTAA 2 cut(s) 377, 766
Tru9I TTAA 2 cut(s) 377, 766
TscAI CASTG 1 cut(s) 61
TseI GCWGC 2 cut(s) 473, 697
TspDTI ATGAA 2 cut(s) 17, 657
TspRI CASTG 1 cut(s) 61
XapI RAATTY 1 cut(s) 370
XceI RCATGY 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 261
ZrmI AGTACT 2 cut(s) 402, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.