Prupe.6G158500_v2.0.a1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000194
Physical Location & Seq
Reverse (-)
14282220 .. 14284973
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G158500.1

Sequence Viewer

Length: 2082 bp
ATGGATGCAAAAGATGATGTCCCATGGGTAGTTATGGGCGATCTCAATGAAGTAGCTTGGCACTTTGAAAAAGAAGGTGGTGCCATTTGGAATCCAAAGAGAAAAAGGTACTTGGTTGACTTCATGGCAGACAATAACCTCATGGACTTGGGGGTAATCCAACTTTCAGTAAATAAAGGCAAAAAAAATTTCAAGTTTGAAGCAAAATGGCTCGAGGATTCTGACTGCGAGGTGATTGTCAAAAATAGCCTGAACAAAGAACTGCATGGCCCATACCAAAAGCAGTGGATAGGGAAGCTGAGGAATTGTAAATATGCCTTGCAAAATTGGAGAAAAGGTAAAGTCAACAATACTAGAGTCCAAATTAACCATCTCATCTCGGAACTGGATAACATCCAGGTTTCAAGGACCACTGTCTCATCTGATGCGCACCAAAGGGTGATAAGAGCTTCTTTGAGCGACCTTTGGAAAATGGAAGAGATTATTGGAATCAACGCGCAAAAGTCCACTAGCTCAAAGCAGCCGGTTATCACTCAGGAAATGAATGCAAATCTCACCAACCCTTTCACTGAAGATGAAATCCTTGCTGCTTCTAAGCAATTGGGAGCCCTCAAAGTCCCACGCCTAGACGGTTTTCCAAGTATTTTTTACCACAAATTCTGGAGTACAATGAAGAAAGAAGTGATTGGAACAACAAAGGATATGTATATCGGCCTCTCCAACCTTCAAGATTTAAATCAAACCCACATTGCTCTGATTCCTAAGGTGGCTGCCCCTGACAAAGCAAACCAATTCAGACCAATTAGTCTTTGTAACAGTTCTTATAAGATTCTATCCAAGATCTTAGCCAATCGTCTCAAGTCCATTCTGCCTTTGATTATTTCTGAGAACCAAAACGAATTTTTACAGGAAAGACAAATACAAGATATATCATTTTGGCTCATGAGGCTTTCCATCACCTCAGAAACAAAAAAAAAAAAAAGAAAAAGAGAAAAAAAAGGCAAGTGCTTCGAAGCGGGTCTTAAGATGGATATGAACAAGGCTTTTGATCGTGTTGAATGGGACTTTTTGAGATCGGCAATGTCAAAGATGGGTTTTGCTGACTTCTGGATTCGCCTAGTCATGGGATGCATAACTACTGTTTCTTTCTCTGTCCTCCTAAATGATAAAAAAAAATTGGCCTTATCTTTTATTCGAGAAAGAATTCAAAAGAAGATAATGGGGTGGAGGGAAAGTACTCTCTCCATTGCCGGAAAAGAGACCATCCTTAAAGCTGTGGCAAAGGCTATCCCCACATATTCTATGATGTGTTTCAGATTCCCCACAAGTCTCTGCAAAGATATTAACAGTGATATGGCAAAATTTTGGTGGCATAACACCCAATCCAATACTGGAATTCATTGGAAATCTTGGAAGCACTTGTGCCAAAGTAAGCAACAGGGTGGCTTGGGTTTCAGAGATCTAGCAGAACTCAACTTAGCTTTGCTAGGTAAACAGAGTTGGCAAATTTTGAATAATCCAAATGCTTACTGGGTGCGAGTTTTAAAGGTCCGTTTCTTTCCATCAGTAGAAGACTTCTGGCAAGCCAAGGTTGGCCATCGAGCTTCGTGGGCTTGGGCAAGCTTAATTGCTAGGCGTGATTTTCTAATCTCCAAGGCAAGAAAACAGATCTTTAGTGGAAATGATACATGCATATGGAATGATCGATGGCTCCCCCTTCCACATGTGGGTTTTATTCAGGCCACATGCCAAATTCCTGATACTGCTCCCCAGTTAGTTTGTGATATCATGGATTCTCACAATCGTGCTTGGAACCTTGATGATATTAGACCCTTCATTGATCAAAACACTTTAGAGACAATCAAAAAAATCCCAATTGGTGTTACATCTTCGGCCTACCGTTTCATTTGGCCTTGGAGTAGTGATGGTCACTACTCTGTCAAATCTGGATACCATTACTTGCACTCTGAGACAATGTCTATCTCCACCCTTCCAGCTAACTCCTCCCACCGTGTGCACCCTTTGGTGTGGAAAGGGATTTGGAAGATTAAAACCCTGCTAAAAATCAAATTCTTCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

694

Amino Acids

80.12

Weight (kDa)

9.67

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 825
AasI GACNNNNNNGTC 1 cut(s) 804
Acc16I TGCGCA 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 80
AccII CGCG 1 cut(s) 497
AciI CCGC 1 cut(s) 1016
AcoI YGGCCR 1 cut(s) 1594
AcsI RAATTY 9 cut(s) 187, 656, 899, 1203, 1361, 1395, 1506, 1752, 2069
AcuI CTGAAG 1 cut(s) 591
AdeI CACNNNGTG 1 cut(s) 2014
AfaI GTAC 3 cut(s) 110, 667, 1237
AfiI CCNNNNNNNGG 2 cut(s) 1123, 1727
AflII CTTAAG 1 cut(s) 1022
AflIII ACRYGT 1 cut(s) 1723
AgsI TTSAA 8 cut(s) 68, 193, 200, 405, 728, 1058, 1208, 1513
AjnI CCWGG 1 cut(s) 396
AjuI GAANNNNNNNTTGG 2 cut(s) 468, 500
AleI CACNNNNGTG 1 cut(s) 1803
AluBI AGCT 9 cut(s) 56, 298, 449, 513, 1274, 1481, 1604, 1623, 1997
AluI AGCT 9 cut(s) 56, 298, 449, 513, 1274, 1481, 1604, 1623, 1997
Alw21I GWGCWC 1 cut(s) 2019
Alw26I GTCTC 6 cut(s) 421, 860, 1253, 1334, 1850, 1964
Alw44I GTGCAC 1 cut(s) 2015
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 7 cut(s) 268, 712, 1179, 1594, 1740, 1893, 1910
ApaLI GTGCAC 1 cut(s) 2015
ApeKI GCWGC 3 cut(s) 520, 587, 770
ApoI RAATTY 9 cut(s) 187, 656, 899, 1203, 1361, 1395, 1506, 1752, 2069
Asp700I GAANNNNTTC 1 cut(s) 1203
AspLEI GCGC 2 cut(s) 430, 499
AspS9I GGNCC 3 cut(s) 269, 408, 1549
AsuHPI GGTGA 4 cut(s) 244, 451, 547, 949
AsuII TTCGAA 1 cut(s) 1011
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 2 cut(s) 408, 1549
AxyI CCTNAGG 1 cut(s) 762
BaeGI GKGCMC 1 cut(s) 2019
BalI TGGCCA 1 cut(s) 1596
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 610
BbsI GAAGAC 1 cut(s) 1578
Bbv12I GWGCWC 1 cut(s) 2019
BbvCI CCTCAGC 1 cut(s) 299
BbvI GCAGC 3 cut(s) 532, 574, 757
BccI CCATC 9 cut(s) 378, 962, 1021, 1084, 1271, 1570, 1605, 1701, 1919
BcgI CGANNNNNNTGC 2 cut(s) 991, 1025
BciT130I CCWGG 1 cut(s) 398
BciVI GTATCC 1 cut(s) 1943
BclI TGATCA 1 cut(s) 1840
BcoDI GTCTC 6 cut(s) 421, 860, 1253, 1334, 1850, 1964
BfaI CTAG 8 cut(s) 354, 510, 626, 1118, 1463, 1487, 1632, 2080
BfrI CTTAAG 1 cut(s) 1022
BfuI GTATCC 1 cut(s) 1943
BglII AGATCT 3 cut(s) 840, 1459, 1668
BisI GCNGC 3 cut(s) 521, 588, 771
BlsI GCNGC 3 cut(s) 522, 589, 772
BmcAI AGTACT 1 cut(s) 1237
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 2 cut(s) 408, 1549
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 3 cut(s) 269, 408, 1549
BmiI GGNNCC 4 cut(s) 82, 607, 1712, 1814
BmrFI CCNGG 1 cut(s) 398
BmrI ACTGGG 2 cut(s) 1540, 1765
BmsI GCATC 2 cut(s) 415, 1118
BmuI ACTGGG 2 cut(s) 1540, 1765
BoxI GACNNNNGTC 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 1578
BpmI CTGGAG 1 cut(s) 682
Bpu10I CCTNAGC 1 cut(s) 299
Bpu14I TTCGAA 1 cut(s) 1011
BpuEI CTTGAG 1 cut(s) 842
Bsa29I ATCGAT 1 cut(s) 1705
BsaBI GATNNNNATC 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 1253
BsaJI CCNNGG 4 cut(s) 23, 1587, 1653, 1913
BsaXI ACNNNNNCTCC 4 cut(s) 322, 352, 1219, 1249
Bsc4I CCNNNNNNNGG 2 cut(s) 1123, 1727
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 4 cut(s) 390, 1396, 1535, 1771
Bse21I CCTNAGG 1 cut(s) 762
Bse3DI GCAATG 3 cut(s) 747, 1086, 1245
Bse8I GATNNNNATC 1 cut(s) 735
BseBI CCWGG 1 cut(s) 398
BseCI ATCGAT 1 cut(s) 1705
BseDI CCNNGG 4 cut(s) 23, 1587, 1653, 1913
BseGI GGATG 4 cut(s) 10, 393, 1133, 1263
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 2 cut(s) 1123, 1727
BseMI GCAATG 3 cut(s) 747, 1086, 1245
BseMII CTCAG 5 cut(s) 290, 548, 876, 975, 1959
BseNI ACTGG 4 cut(s) 390, 1396, 1535, 1771
BseRI GAGGAG 1 cut(s) 1993
BseSI GKGCMC 1 cut(s) 2019
BseXI GCAGC 3 cut(s) 532, 574, 757
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 7 cut(s) 270, 714, 1181, 1596, 1742, 1895, 1912
BshNI GGYRCC 1 cut(s) 80
BshVI ATCGAT 1 cut(s) 1705
BsiHKAI GWGCWC 1 cut(s) 2019
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 2 cut(s) 524, 1251
BslFI GGGAC 3 cut(s) 5, 602, 1076
BslI CCNNNNNNNGG 2 cut(s) 1123, 1727
BsmAI GTCTC 6 cut(s) 421, 860, 1253, 1334, 1850, 1964
BsmBI CGTCTC 1 cut(s) 860
BsmFI GGGAC 3 cut(s) 5, 602, 1076
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 7 cut(s) 270, 714, 1181, 1596, 1742, 1895, 1912
Bso31I GGTCTC 1 cut(s) 1253
BsoBI CYCGRG 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 1011
Bsp1286I GDGCHC 2 cut(s) 610, 2019
Bsp143I GATC 8 cut(s) 40, 840, 1048, 1073, 1459, 1668, 1702, 1840
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 1 cut(s) 1016
BspANI GGCC 7 cut(s) 270, 714, 1181, 1596, 1742, 1895, 1912
BspCNI CTCAG 5 cut(s) 291, 547, 877, 974, 1960
BspDI ATCGAT 1 cut(s) 1705
BspFNI CGCG 1 cut(s) 497
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 4 cut(s) 82, 607, 1712, 1814
BspT104I TTCGAA 1 cut(s) 1011
BspT107I GGYRCC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 1022
BspTNI GGTCTC 1 cut(s) 1253
BsrDI GCAATG 3 cut(s) 747, 1086, 1245
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 4 cut(s) 390, 1396, 1535, 1771
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 4 cut(s) 23, 1587, 1653, 1913
BssMI GATC 8 cut(s) 40, 840, 1048, 1073, 1459, 1668, 1702, 1840
BssT1I CCWWGG 4 cut(s) 23, 1587, 1653, 1913
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 7 cut(s) 415, 632, 818, 1141, 1349, 1901, 2012
Bst6I CTCTTC 1 cut(s) 471
BstAFI CTTAAG 1 cut(s) 1022
BstBI TTCGAA 1 cut(s) 1011
BstC8I GCNNGC 2 cut(s) 1584, 1621
BstDEI CTNAG 9 cut(s) 299, 534, 594, 762, 844, 885, 961, 1477, 1968
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 4 cut(s) 10, 393, 1133, 1263
BstFNI CGCG 1 cut(s) 497
BstHHI GCGC 2 cut(s) 430, 499
BstKTI GATC 8 cut(s) 43, 843, 1051, 1076, 1462, 1671, 1705, 1843
BstMAI GTCTC 6 cut(s) 421, 860, 1253, 1334, 1850, 1964
BstMBI GATC 8 cut(s) 40, 840, 1048, 1073, 1459, 1668, 1702, 1840
BstMWI GCNNNNNNNGC 2 cut(s) 946, 1610
BstNI CCWGG 1 cut(s) 398
BstNSI RCATGY 3 cut(s) 1692, 1727, 1749
BstPAI GACNNNNGTC 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 2019
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 3 cut(s) 532, 574, 757
BstV2I GAAGAC 1 cut(s) 1578
BstX2I RGATCY 3 cut(s) 840, 1459, 1668
BstYI RGATCY 3 cut(s) 840, 1459, 1668
Bsu15I ATCGAT 1 cut(s) 1705
Bsu36I CCTNAGG 1 cut(s) 762
BsuI GTATCC 1 cut(s) 1943
BsuRI GGCC 7 cut(s) 270, 714, 1181, 1596, 1742, 1895, 1912
BsuTUI ATCGAT 1 cut(s) 1705
BtgI CCRYGG 1 cut(s) 23
BtsCI GGATG 4 cut(s) 10, 393, 1133, 1263
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 4 cut(s) 290, 411, 567, 1354
Cac8I GCNNGC 2 cut(s) 1584, 1621
CciI TCATGA 1 cut(s) 942
CfoI GCGC 2 cut(s) 430, 499
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 3 cut(s) 269, 408, 1549
ClaI ATCGAT 1 cut(s) 1705
Csp6I GTAC 3 cut(s) 109, 666, 1236
CspCI CAANNNNNGTGG 2 cut(s) 266, 301
CviQI GTAC 3 cut(s) 109, 666, 1236
DdeI CTNAG 9 cut(s) 299, 534, 594, 762, 844, 885, 961, 1477, 1968
DpnI GATC 8 cut(s) 42, 842, 1050, 1075, 1461, 1670, 1704, 1842
DpnII GATC 8 cut(s) 40, 840, 1048, 1073, 1459, 1668, 1702, 1840
DraI TTTAAA 2 cut(s) 735, 1545
DraIII CACNNNGTG 1 cut(s) 2014
DrdI GACNNNNNNGTC 1 cut(s) 804
DseDI GACNNNNNNGTC 1 cut(s) 804
EaeI YGGCCR 1 cut(s) 1594
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 4 cut(s) 23, 1587, 1653, 1913
Eco24I GRGCYC 1 cut(s) 610
Eco31I GGTCTC 1 cut(s) 1253
Eco32I GATATC 1 cut(s) 1786
Eco47I GGWCC 2 cut(s) 408, 1549
Eco57I CTGAAG 1 cut(s) 591
Eco81I CCTNAGG 1 cut(s) 762
Eco88I CYCGRG 1 cut(s) 212
EcoRI GAATTC 2 cut(s) 1203, 1395
EcoRII CCWGG 1 cut(s) 396
EcoRV GATATC 1 cut(s) 1786
EcoT14I CCWWGG 4 cut(s) 23, 1587, 1653, 1913
EcoT22I ATGCAT 2 cut(s) 1133, 1694
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 4 cut(s) 23, 1587, 1653, 1913
Esp3I CGTCTC 1 cut(s) 860
FalI AAGNNNNNCTT 4 cut(s) 436, 468, 1005, 1037
FaqI GGGAC 3 cut(s) 5, 602, 1076
FauI CCCGC 1 cut(s) 1009
FauNDI CATATG 1 cut(s) 1694
FbaI TGATCA 1 cut(s) 1840
Fnu4HI GCNGC 3 cut(s) 521, 588, 771
FokI GGATG 4 cut(s) 17, 380, 1140, 1250
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 3 cut(s) 521, 588, 771
FspAI RTGCGCAY 1 cut(s) 429
FspBI CTAG 8 cut(s) 354, 510, 626, 1118, 1463, 1487, 1632, 2080
FspI TGCGCA 1 cut(s) 429
GlaI GCGC 2 cut(s) 429, 498
GluI GCNGC 3 cut(s) 521, 588, 771
GsuI CTGGAG 1 cut(s) 682
HaeIII GGCC 7 cut(s) 270, 714, 1181, 1596, 1742, 1895, 1912
HapII CCGG 2 cut(s) 524, 1251
HhaI GCGC 2 cut(s) 430, 499
Hin6I GCGC 2 cut(s) 428, 497
HinP1I GCGC 2 cut(s) 428, 497
HincII GTYRAC 2 cut(s) 118, 346
HindII GTYRAC 2 cut(s) 118, 346
HindIII AAGCTT 1 cut(s) 1621
HinfI GANTC 9 cut(s) 91, 218, 357, 489, 757, 829, 1111, 1317, 1793
HpaII CCGG 2 cut(s) 524, 1251
HphI GGTGA 4 cut(s) 244, 451, 547, 949
Hpy166II GTNNAC 5 cut(s) 118, 346, 507, 1493, 2017
Hpy188III TCNNGA 8 cut(s) 536, 661, 728, 943, 1108, 1196, 1757, 1947
Hpy8I GTNNAC 5 cut(s) 118, 346, 507, 1493, 2017
HpyAV CCTTC 5 cut(s) 68, 734, 1727, 1843, 2000
HpyCH4III ACNGT 7 cut(s) 415, 632, 818, 1141, 1349, 1901, 2012
HpyCH4V TGCA 9 cut(s) 8, 265, 322, 548, 1131, 1335, 1692, 1963, 2017
HpyF10VI GCNNNNNNNGC 2 cut(s) 946, 1610
HpyF3I CTNAG 9 cut(s) 299, 534, 594, 762, 844, 885, 961, 1477, 1968
HspAI GCGC 2 cut(s) 428, 497
Ksp22I TGATCA 1 cut(s) 1840
Kzo9I GATC 8 cut(s) 40, 840, 1048, 1073, 1459, 1668, 1702, 1840
LmnI GCTCC 3 cut(s) 605, 1716, 1771
Lsp1109I GCAGC 3 cut(s) 532, 574, 757
LweI GCATC 2 cut(s) 415, 1118
MaeI CTAG 8 cut(s) 354, 510, 626, 1118, 1463, 1487, 1632, 2080
MaeIII GTNAC 3 cut(s) 812, 1882, 1928
MalI GATC 8 cut(s) 42, 842, 1050, 1075, 1461, 1670, 1704, 1842
MboI GATC 8 cut(s) 40, 840, 1048, 1073, 1459, 1668, 1702, 1840
MboII GAAGA 8 cut(s) 488, 584, 685, 1225, 1583, 1881, 2056, 2065
MfeI CAATTG 2 cut(s) 599, 1875
MflI RGATCY 3 cut(s) 840, 1459, 1668
MhlI GDGCHC 2 cut(s) 610, 2019
MlsI TGGCCA 1 cut(s) 1596
MluNI TGGCCA 1 cut(s) 1596
MlyI GAGTC 1 cut(s) 366
MmeI TCCRAC 2 cut(s) 184, 744
Mox20I TGGCCA 1 cut(s) 1596
Mph1103I ATGCAT 2 cut(s) 1133, 1694
MroXI GAANNNNTTC 1 cut(s) 1203
MscI TGGCCA 1 cut(s) 1596
MseI TTAA 8 cut(s) 366, 734, 1023, 1269, 1344, 1544, 1625, 2049
MslI CAYNNNNRTG 2 cut(s) 1693, 1803
Msp20I TGGCCA 1 cut(s) 1596
MspCI CTTAAG 1 cut(s) 1022
MspI CCGG 2 cut(s) 524, 1251
MspR9I CCNGG 1 cut(s) 398
MunI CAATTG 2 cut(s) 599, 1875
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 2 cut(s) 946, 1610
NcoI CCATGG 1 cut(s) 23
NdeI CATATG 1 cut(s) 1694
NdeII GATC 8 cut(s) 40, 840, 1048, 1073, 1459, 1668, 1702, 1840
NlaIV GGNNCC 4 cut(s) 82, 607, 1712, 1814
NmuCI GTSAC 1 cut(s) 1928
NsbI TGCGCA 1 cut(s) 429
NsiI ATGCAT 2 cut(s) 1133, 1694
NspI RCATGY 3 cut(s) 1692, 1727, 1749
NspV TTCGAA 1 cut(s) 1011
OliI CACNNNNGTG 1 cut(s) 1803
PaeR7I CTCGAG 1 cut(s) 212
PagI TCATGA 1 cut(s) 942
PciI ACATGT 1 cut(s) 1723
PctI GAATGC 1 cut(s) 550
PdmI GAANNNNTTC 1 cut(s) 1203
PfeI GAWTC 8 cut(s) 91, 218, 489, 757, 829, 1111, 1317, 1793
PflFI GACNNNGTC 1 cut(s) 1975
PkrI GCNGC 3 cut(s) 522, 589, 772
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PscI ACATGT 1 cut(s) 1723
PshAI GACNNNNGTC 1 cut(s) 413
PsiI TTATAA 1 cut(s) 825
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 4 cut(s) 82, 607, 1712, 1814
PspPI GGNCC 3 cut(s) 269, 408, 1549
PspXI VCTCGAGB 1 cut(s) 212
PsuI RGATCY 3 cut(s) 840, 1459, 1668
PsyI GACNNNGTC 1 cut(s) 1975
RsaI GTAC 3 cut(s) 110, 667, 1237
RsaNI GTAC 3 cut(s) 109, 666, 1236
RseI CAYNNNNRTG 2 cut(s) 1693, 1803
SaqAI TTAA 8 cut(s) 366, 734, 1023, 1269, 1344, 1544, 1625, 2049
SatI GCNGC 3 cut(s) 521, 588, 771
Sau3AI GATC 8 cut(s) 40, 840, 1048, 1073, 1459, 1668, 1702, 1840
Sau96I GGNCC 3 cut(s) 269, 408, 1549
ScaI AGTACT 1 cut(s) 1237
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 1 cut(s) 398
SduI GDGCHC 2 cut(s) 610, 2019
SfaNI GCATC 2 cut(s) 415, 1118
Sfr274I CTCGAG 1 cut(s) 212
SfuI TTCGAA 1 cut(s) 1011
SinI GGWCC 2 cut(s) 408, 1549
SlaI CTCGAG 1 cut(s) 212
SmiI ATTTAAAT 1 cut(s) 735
SmiMI CAYNNNNRTG 2 cut(s) 1693, 1803
SmlI CTYRAG 3 cut(s) 212, 857, 1022
SmoI CTYRAG 3 cut(s) 212, 857, 1022
SsiI CCGC 1 cut(s) 1016
SspMI CTAG 8 cut(s) 354, 510, 626, 1118, 1463, 1487, 1632, 2080
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 4 cut(s) 23, 1587, 1653, 1913
SwaI ATTTAAAT 1 cut(s) 735
TaaI ACNGT 7 cut(s) 415, 632, 818, 1141, 1349, 1901, 2012
TaqI TCGA 5 cut(s) 213, 1011, 1195, 1600, 1705
TatI WGTACW 2 cut(s) 665, 1235
TfiI GAWTC 8 cut(s) 91, 218, 489, 757, 829, 1111, 1317, 1793
Tru1I TTAA 8 cut(s) 366, 734, 1023, 1269, 1344, 1544, 1625, 2049
Tru9I TTAA 8 cut(s) 366, 734, 1023, 1269, 1344, 1544, 1625, 2049
TscAI CASTG 4 cut(s) 290, 418, 574, 1354
TseFI GTSAC 1 cut(s) 1928
TseI GCWGC 3 cut(s) 520, 587, 770
Tsp45I GTSAC 1 cut(s) 1928
TspDTI ATGAA 9 cut(s) 63, 112, 557, 591, 686, 1049, 1388, 1825, 1894
TspGWI ACGGA 1 cut(s) 1541
TspRI CASTG 4 cut(s) 290, 418, 574, 1354
Tth111I GACNNNGTC 1 cut(s) 1975
Vha464I CTTAAG 1 cut(s) 1022
VneI GTGCAC 1 cut(s) 2015
VpaK11BI GGWCC 2 cut(s) 408, 1549
XapI RAATTY 9 cut(s) 187, 656, 899, 1203, 1361, 1395, 1506, 1752, 2069
XceI RCATGY 3 cut(s) 1692, 1727, 1749
XcmI CCANNNNNNNNNTGG 2 cut(s) 1388, 1527
XhoI CTCGAG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 1203
XspI CTAG 8 cut(s) 354, 510, 626, 1118, 1463, 1487, 1632, 2080
ZrmI AGTACT 1 cut(s) 1237
Zsp2I ATGCAT 2 cut(s) 1133, 1694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.