FvH4_6g11612

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000194
Physical Location & Seq
Forward (+)
6958625 .. 6960208
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11612.t1

Sequence Viewer

Length: 1584 bp
ATGGGTTTCTCCAATGGTTTTGTTCTTTTGATTACGGCTTGTGTTAAGTCTGTGTCCTTTGCTGTTACCCTAAATGGAAAGGTAGGGGAGTATTTCAAGCCTTCAAGAGGTTTGAGACAAGGGGACCCGATCTCTCCCTACTTGTTCTTATTTGTTTCAGATGTCTTCTCCTCTCTTATCAGAAGAGCTTGTGAAGCCAGAACTCTTCAGGGTATCAAGCTTAGTGAGTATGGTCCGACTTTGTCGCACCTATTTTTTGCTGATGACTCTCTTTTCTTCCTATCGGCCACATCTGCTAATTGCTATGAGATTATGCGTATTATTGAAGTGTATTGTGTTGCCTCAGGTCAGCTTGTCAACCACAATAAGTCAACTCTCTATTGTACGCCTAACATGTCTGATGCTTGTGTTCATGTACTCTGTGAAATTCTGGGAATACCTGCCACTATCAATCCTGGGCGATACCTTGGTCTCCCTACCATTTGGGGCAGATCTAAAAAAGCTTCCCTCTCTTTTATCAAATCAAAGTTGGCTGATAAGATCCAAAACTGGAAACTTTGCACTTTATCTATGGCAGGGAGGGAAACCCTAATCAAAGCGGTGGCTCAAGCTGTTCCTACTTTCCCCATGCATTGTTTCAAGTTTCCGATCACTTTGTGCAATGAACTAGATGCTATGATGGCTAATTTTTGGTGGGGCCAGCATAAAGATGAGCATAAAATTCATTGGAAAAGTTGGGATTTCCTTGGTCAGCCTAAAGACCGTGGTGGCATGGGTTTTAGAAATATGAAGGAGTTTAACATCTCCCTCCTAGCAAAGCAGGTTTGGAGACTACATTCTGAGCCTACCTCTTTATGTGCTCGAATTCTAAAAGGAATCTACTATCCTAGTACCGATATCCTAAATGCCGGAAAGGGATCTCGTGCATCGTGGGCGTGGAGCAGTCTTTTGGATGGTAAAGATCTAATTGTTGATGGGGCTAGATGGCAGGTTGGGAATGGGGAGCTCATTAACATTTGGGCTGACAAGTGGATTCCTACCTCCACCAATGGGTTCTTGTGCCCTATGCTTCCTGTGAATTGCTCTAGTCCCCACATGGTGAAGGATCTGACTGATTGGGGTGCTAGATGTTGGAAGCTGGAAATGATAAATGATCTAATTTCAAAGGATGATCAATCAGACATTGAGTTGATAGTCTTGGGTGACCAATCTATGTTAGATAGAATTATTTGGCCTGAGACAAAGAGTGGCCAGTACTCTGTAAAGTCAGGTTATCACTTTCTACATTCCCAAGACTGCAAGCCTACTACGCAACATGCTCATTCATCTCACAGGTTGAATCATATTGTGTGGAAGACGGTTTGGTCTACTCAAACTACTCCTAAGATTACTAATTTCCTATGGAGAATCTTGGCTAATGCTCTTCCATCTTACCTAAATCTTCACAAAAGGAAAATAATCCCTTCCCCCTTGTGCCCTGTGTGTGATATGTTTCCGGAGTCTATTGAGCATATCTTTCTTCAGTGCCCGGGTGCAGTGTGTGCTTGGTTTGCTTCTGATTTGTATTACAAGATCAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

528

Amino Acids

59.55

Weight (kDa)

8.79

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 19 - 157 4.4e-10 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 419 - 516 4.3e-16 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1363
Acc36I ACCTGC 3 cut(s) 448, 811, 979
AccI GTMKAC 1 cut(s) 1367
AccIII TCCGGA 1 cut(s) 1495
AciI CCGC 1 cut(s) 599
AclWI GGATC 3 cut(s) 535, 925, 1113
AcoI YGGCCR 2 cut(s) 285, 1249
AcsI RAATTY 3 cut(s) 426, 720, 864
AcuI CTGAAG 2 cut(s) 191, 1505
AdeI CACNNNGTG 2 cut(s) 657, 1099
AfaI GTAC 4 cut(s) 385, 417, 892, 1256
AfiI CCNNNNNNNGG 2 cut(s) 107, 1050
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 6 cut(s) 97, 105, 326, 640, 1164, 1339
AjnI CCWGG 1 cut(s) 454
AluBI AGCT 7 cut(s) 188, 220, 352, 503, 611, 1006, 1138
AluI AGCT 7 cut(s) 188, 220, 352, 503, 611, 1006, 1138
Alw21I GWGCWC 2 cut(s) 862, 1008
Alw26I GTCTC 4 cut(s) 109, 476, 823, 1232
AlwI GGATC 3 cut(s) 535, 925, 1113
Ama87I CYCGRG 1 cut(s) 1528
Aor13HI TCCGGA 1 cut(s) 1495
AoxI GGCC 4 cut(s) 285, 697, 1232, 1249
ApoI RAATTY 3 cut(s) 426, 720, 864
AspS9I GGNCC 3 cut(s) 124, 233, 697
AsuC2I CCSGG 2 cut(s) 1529, 1530
AsuHPI GGTGA 2 cut(s) 1111, 1214
AvaI CYCGRG 1 cut(s) 1528
AvaII GGWCC 2 cut(s) 124, 233
AxyI CCTNAGG 1 cut(s) 343
BaeGI GKGCMC 3 cut(s) 1064, 1478, 1529
BaeI ACNNNNGTAYC 2 cut(s) 454, 487
BalI TGGCCA 1 cut(s) 1251
BanII GRGCYC 1 cut(s) 1008
BauI CACGAG 1 cut(s) 921
BbsI GAAGAC 2 cut(s) 157, 1361
Bbv12I GWGCWC 2 cut(s) 862, 1008
BccI CCATC 5 cut(s) 673, 947, 968, 978, 1435
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 456
BclI TGATCA 1 cut(s) 1171
BcnI CCSGG 2 cut(s) 1529, 1530
BcoDI GTCTC 4 cut(s) 109, 476, 823, 1232
BfaI CTAG 6 cut(s) 668, 812, 888, 981, 1086, 1125
BfuAI ACCTGC 3 cut(s) 448, 811, 979
BglII AGATCT 2 cut(s) 491, 961
BmcAI AGTACT 1 cut(s) 1256
Bme1390I CCNGG 3 cut(s) 456, 1529, 1530
Bme18I GGWCC 2 cut(s) 124, 233
BmeT110I CYCGRG 1 cut(s) 1528
BmgT120I GGNCC 3 cut(s) 124, 233, 697
BmiI GGNNCC 3 cut(s) 125, 126, 698
BmrFI CCNGG 3 cut(s) 456, 1529, 1530
BmsI GCATC 3 cut(s) 391, 661, 935
BpiI GAAGAC 2 cut(s) 157, 1361
BplI GAGNNNNNCTC 2 cut(s) 833, 865
BpuEI CTTGAG 1 cut(s) 591
BpuMI CCSGG 2 cut(s) 1529, 1530
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 5 cut(s) 455, 466, 745, 763, 1528
BsaWI WCCGGW 1 cut(s) 1495
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 1050
Bse1I ACTGG 2 cut(s) 554, 1252
Bse21I CCTNAGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 667
BseAI TCCGGA 1 cut(s) 1495
BseBI CCWGG 1 cut(s) 456
BseDI CCNNGG 5 cut(s) 455, 466, 745, 763, 1528
BseGI GGATG 2 cut(s) 958, 1174
BseLI CCNNNNNNNGG 2 cut(s) 107, 1050
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 3 cut(s) 357, 831, 1227
BseNI ACTGG 2 cut(s) 554, 1252
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 3 cut(s) 1064, 1478, 1529
BsgI GTGCAG 1 cut(s) 1554
BshFI GGCC 4 cut(s) 287, 699, 1234, 1251
BsiHKAI GWGCWC 2 cut(s) 862, 1008
BsiHKCI CYCGRG 1 cut(s) 1528
BsiSI CCGG 3 cut(s) 909, 1496, 1529
BslFI GGGAC 2 cut(s) 137, 1074
BslI CCNNNNNNNGG 2 cut(s) 107, 1050
BsmAI GTCTC 4 cut(s) 109, 476, 823, 1232
BsmFI GGGAC 2 cut(s) 137, 1074
BsnI GGCC 4 cut(s) 287, 699, 1234, 1251
Bso31I GGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 1528
Bsp1286I GDGCHC 5 cut(s) 862, 1008, 1064, 1478, 1529
Bsp13I TCCGGA 1 cut(s) 1495
BspACI CCGC 1 cut(s) 599
BspANI GGCC 4 cut(s) 287, 699, 1234, 1251
BspCNI CTCAG 3 cut(s) 356, 832, 1228
BspEI TCCGGA 1 cut(s) 1495
BspLI GGNNCC 3 cut(s) 125, 126, 698
BspMI ACCTGC 3 cut(s) 448, 811, 979
BspPI GGATC 3 cut(s) 535, 925, 1113
BspQI GCTCTTC 2 cut(s) 178, 1428
BspTNI GGTCTC 1 cut(s) 476
BsrDI GCAATG 1 cut(s) 667
BsrI ACTGG 2 cut(s) 554, 1252
BssECI CCNNGG 5 cut(s) 455, 466, 745, 763, 1528
BssSI CACGAG 1 cut(s) 921
BssT1I CCWWGG 2 cut(s) 466, 745
Bst2BI CACGAG 1 cut(s) 921
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 2 cut(s) 764, 1360
Bst6I CTCTTC 3 cut(s) 178, 210, 1428
BstAPI GCANNNNNTGC 1 cut(s) 1541
BstC8I GCNNGC 2 cut(s) 701, 1301
BstDEI CTNAG 5 cut(s) 221, 343, 840, 1236, 1383
BstDSI CCRYGG 1 cut(s) 763
BstEII GGTNACC 1 cut(s) 1202
BstENI CCTNNNNNAGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 958, 1174
BstMAI GTCTC 4 cut(s) 109, 476, 823, 1232
BstMWI GCNNNNNNNGC 7 cut(s) 194, 293, 680, 932, 1309, 1541, 1550
BstNI CCWGG 1 cut(s) 456
BstNSI RCATGY 2 cut(s) 397, 1319
BstPI GGTNACC 1 cut(s) 1202
BstSCI CCNGG 3 cut(s) 454, 1527, 1528
BstSLI GKGCMC 3 cut(s) 1064, 1478, 1529
BstV2I GAAGAC 2 cut(s) 157, 1361
BstX2I RGATCY 5 cut(s) 491, 540, 917, 961, 1105
BstYI RGATCY 5 cut(s) 491, 540, 917, 961, 1105
Bsu36I CCTNAGG 1 cut(s) 343
BsuRI GGCC 4 cut(s) 287, 699, 1234, 1251
BtgI CCRYGG 1 cut(s) 763
BtsCI GGATG 2 cut(s) 958, 1174
BtsI GCAGTG 1 cut(s) 1542
BtsIMutI CAGTG 2 cut(s) 1529, 1542
BveI ACCTGC 3 cut(s) 448, 811, 979
Cac8I GCNNGC 2 cut(s) 701, 1301
Cfr13I GGNCC 3 cut(s) 124, 233, 697
Cfr9I CCCGGG 1 cut(s) 1528
Csp6I GTAC 4 cut(s) 384, 416, 891, 1255
CviAII CATG 6 cut(s) 394, 413, 628, 772, 1096, 1316
CviQI GTAC 4 cut(s) 384, 416, 891, 1255
DdeI CTNAG 5 cut(s) 221, 343, 840, 1236, 1383
DraIII CACNNNGTG 2 cut(s) 657, 1099
DrdI GACNNNNNNGTC 1 cut(s) 1363
DseDI GACNNNNNNGTC 1 cut(s) 1363
EaeI YGGCCR 2 cut(s) 285, 1249
Eam1104I CTCTTC 3 cut(s) 178, 210, 1428
EarI CTCTTC 3 cut(s) 178, 210, 1428
Ecl136II GAGCTC 1 cut(s) 1006
Eco130I CCWWGG 2 cut(s) 466, 745
Eco24I GRGCYC 1 cut(s) 1008
Eco31I GGTCTC 1 cut(s) 476
Eco32I GATATC 1 cut(s) 898
Eco47I GGWCC 2 cut(s) 124, 233
Eco53kI GAGCTC 1 cut(s) 1006
Eco57I CTGAAG 2 cut(s) 191, 1505
Eco81I CCTNAGG 1 cut(s) 343
Eco88I CYCGRG 1 cut(s) 1528
Eco91I GGTNACC 1 cut(s) 1202
EcoICRI GAGCTC 1 cut(s) 1006
EcoNI CCTNNNNNAGG 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 124
EcoO65I GGTNACC 1 cut(s) 1202
EcoRI GAATTC 1 cut(s) 864
EcoRII CCWGG 1 cut(s) 454
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 2 cut(s) 466, 745
EcoT22I ATGCAT 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 1008
ErhI CCWWGG 2 cut(s) 466, 745
FaeI CATG 6 cut(s) 397, 416, 631, 775, 1099, 1319
FalI AAGNNNNNCTT 1 cut(s) 1562
FaqI GGGAC 2 cut(s) 137, 1074
FatI CATG 6 cut(s) 393, 412, 627, 771, 1095, 1315
FbaI TGATCA 1 cut(s) 1171
FblI GTMKAC 1 cut(s) 1367
FokI GGATG 2 cut(s) 965, 1181
FriOI GRGCYC 1 cut(s) 1008
FspBI CTAG 6 cut(s) 668, 812, 888, 981, 1086, 1125
HaeIII GGCC 4 cut(s) 287, 699, 1234, 1251
HapII CCGG 3 cut(s) 909, 1496, 1529
Hin1II CATG 6 cut(s) 397, 416, 631, 775, 1099, 1319
HincII GTYRAC 2 cut(s) 358, 372
HindII GTYRAC 2 cut(s) 358, 372
HindIII AAGCTT 2 cut(s) 218, 501
HinfI GANTC 6 cut(s) 266, 876, 1033, 1339, 1407, 1499
HpaII CCGG 3 cut(s) 909, 1496, 1529
HphI GGTGA 2 cut(s) 1111, 1214
Hpy166II GTNNAC 3 cut(s) 358, 372, 1368
Hpy188I TCNGA 9 cut(s) 160, 182, 237, 400, 648, 841, 1110, 1180, 1558
Hpy188III TCNNGA 2 cut(s) 105, 1496
Hpy8I GTNNAC 3 cut(s) 358, 372, 1368
HpyAV CCTTC 4 cut(s) 111, 784, 1096, 1473
HpyCH4III ACNGT 2 cut(s) 764, 1360
HpyCH4V TGCA 6 cut(s) 561, 631, 660, 926, 1299, 1535
HpyF10VI GCNNNNNNNGC 7 cut(s) 194, 293, 680, 932, 1309, 1541, 1550
HpyF3I CTNAG 5 cut(s) 221, 343, 840, 1236, 1383
Hsp92II CATG 6 cut(s) 397, 416, 631, 775, 1099, 1319
KflI GGGWCCC 1 cut(s) 124
Kpn2I TCCGGA 1 cut(s) 1495
Ksp22I TGATCA 1 cut(s) 1171
LguI GCTCTTC 2 cut(s) 178, 1428
LmnI GCTCC 2 cut(s) 939, 1003
LweI GCATC 3 cut(s) 391, 661, 935
MaeI CTAG 6 cut(s) 668, 812, 888, 981, 1086, 1125
MaeIII GTNAC 2 cut(s) 64, 1202
MboII GAAGA 8 cut(s) 157, 195, 197, 268, 1366, 1415, 1433, 1511
MflI RGATCY 5 cut(s) 491, 540, 917, 961, 1105
MhlI GDGCHC 5 cut(s) 862, 1008, 1064, 1478, 1529
MlsI TGGCCA 1 cut(s) 1251
MluNI TGGCCA 1 cut(s) 1251
MlyI GAGTC 2 cut(s) 260, 1508
MmeI TCCRAC 2 cut(s) 260, 1112
MnlI CCTC 8 cut(s) 101, 181, 352, 518, 573, 818, 859, 1051
Mox20I TGGCCA 1 cut(s) 1251
Mph1103I ATGCAT 1 cut(s) 633
MroI TCCGGA 1 cut(s) 1495
MscI TGGCCA 1 cut(s) 1251
MseI TTAA 3 cut(s) 45, 798, 1011
MslI CAYNNNNRTG 1 cut(s) 708
Msp20I TGGCCA 1 cut(s) 1251
MspI CCGG 3 cut(s) 909, 1496, 1529
MspR9I CCNGG 3 cut(s) 456, 1529, 1530
MvaI CCWGG 1 cut(s) 456
MwoI GCNNNNNNNGC 7 cut(s) 194, 293, 680, 932, 1309, 1541, 1550
NciI CCSGG 2 cut(s) 1529, 1530
NlaIII CATG 6 cut(s) 397, 416, 631, 775, 1099, 1319
NlaIV GGNNCC 3 cut(s) 125, 126, 698
NmuCI GTSAC 1 cut(s) 1202
NsiI ATGCAT 1 cut(s) 633
NspI RCATGY 2 cut(s) 397, 1319
PciI ACATGT 1 cut(s) 393
PciSI GCTCTTC 2 cut(s) 178, 1428
PfeI GAWTC 4 cut(s) 876, 1033, 1339, 1407
PflFI GACNNNGTC 1 cut(s) 241
PleI GAGTC 2 cut(s) 260, 1507
PpsI GAGTC 2 cut(s) 260, 1507
PpuMI RGGWCCY 1 cut(s) 124
PscI ACATGT 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 1008
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 454
PspEI GGTNACC 1 cut(s) 1202
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 3 cut(s) 125, 126, 698
PspPI GGNCC 3 cut(s) 124, 233, 697
PspPPI RGGWCCY 1 cut(s) 124
PsuI RGATCY 5 cut(s) 491, 540, 917, 961, 1105
PsyI GACNNNGTC 1 cut(s) 241
RsaI GTAC 4 cut(s) 385, 417, 892, 1256
RsaNI GTAC 4 cut(s) 384, 416, 891, 1255
RseI CAYNNNNRTG 1 cut(s) 708
SacI GAGCTC 1 cut(s) 1008
SapI GCTCTTC 2 cut(s) 178, 1428
SaqAI TTAA 3 cut(s) 45, 798, 1011
Sau96I GGNCC 3 cut(s) 124, 233, 697
ScaI AGTACT 1 cut(s) 1256
SchI GAGTC 2 cut(s) 260, 1508
ScrFI CCNGG 3 cut(s) 456, 1529, 1530
SduI GDGCHC 5 cut(s) 862, 1008, 1064, 1478, 1529
SfaNI GCATC 3 cut(s) 391, 661, 935
SinI GGWCC 2 cut(s) 124, 233
SmaI CCCGGG 1 cut(s) 1530
SmiMI CAYNNNNRTG 1 cut(s) 708
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
SsiI CCGC 1 cut(s) 599
SspMI CTAG 6 cut(s) 668, 812, 888, 981, 1086, 1125
SstI GAGCTC 1 cut(s) 1008
StyD4I CCNGG 3 cut(s) 454, 1527, 1528
StyI CCWWGG 2 cut(s) 466, 745
TaaI ACNGT 2 cut(s) 764, 1360
TaqI TCGA 1 cut(s) 862
TatI WGTACW 2 cut(s) 415, 1254
TfiI GAWTC 4 cut(s) 876, 1033, 1339, 1407
Tru1I TTAA 3 cut(s) 45, 798, 1011
Tru9I TTAA 3 cut(s) 45, 798, 1011
TscAI CASTG 2 cut(s) 1529, 1542
TseFI GTSAC 1 cut(s) 1202
Tsp45I GTSAC 1 cut(s) 1202
TspDTI ATGAA 5 cut(s) 401, 678, 713, 803, 1314
TspMI CCCGGG 1 cut(s) 1528
TspRI CASTG 2 cut(s) 1529, 1542
Tth111I GACNNNGTC 1 cut(s) 241
VpaK11BI GGWCC 2 cut(s) 124, 233
XagI CCTNNNNNAGG 1 cut(s) 105
XapI RAATTY 3 cut(s) 426, 720, 864
XceI RCATGY 2 cut(s) 397, 1319
XmaI CCCGGG 1 cut(s) 1528
XmiI GTMKAC 1 cut(s) 1367
XspI CTAG 6 cut(s) 668, 812, 888, 981, 1086, 1125
ZrmI AGTACT 1 cut(s) 1256
Zsp2I ATGCAT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.