Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1525 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 690 |
| AccIII | TCCGGA | 1 cut(s) | 220 |
| AclI | AACGTT | 1 cut(s) | 1370 |
| AcsI | RAATTY | 1 cut(s) | 649 |
| AfaI | GTAC | 3 cut(s) | 187, 427, 657 |
| AfeI | AGCGCT | 1 cut(s) | 444 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 150, 631, 690, 1018 |
| AflII | CTTAAG | 1 cut(s) | 407 |
| AjnI | CCWGG | 3 cut(s) | 149, 841, 1333 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 532, 564 |
| Alw21I | GWGCWC | 2 cut(s) | 920, 1549 |
| Alw26I | GTCTC | 2 cut(s) | 174, 355 |
| Ama87I | CYCGRG | 2 cut(s) | 82, 352 |
| Aor13HI | TCCGGA | 1 cut(s) | 220 |
| Aor51HI | AGCGCT | 1 cut(s) | 444 |
| AoxI | GGCC | 3 cut(s) | 51, 342, 618 |
| ApaI | GGGCCC | 1 cut(s) | 55 |
| ApeKI | GCWGC | 3 cut(s) | 503, 1097, 1454 |
| ApoI | RAATTY | 1 cut(s) | 649 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1377, 1409 |
| AspA2I | CCTAGG | 1 cut(s) | 1034 |
| AspLEI | GCGC | 3 cut(s) | 388, 445, 508 |
| AspS9I | GGNCC | 6 cut(s) | 51, 52, 68, 319, 1009, 1330 |
| AsuC2I | CCSGG | 1 cut(s) | 66 |
| AsuHPI | GGTGA | 1 cut(s) | 1256 |
| AsuNHI | GCTAGC | 1 cut(s) | 808 |
| AvaI | CYCGRG | 2 cut(s) | 82, 352 |
| AvaII | GGWCC | 4 cut(s) | 68, 319, 1009, 1330 |
| AvrII | CCTAGG | 1 cut(s) | 1034 |
| BaeGI | GKGCMC | 3 cut(s) | 55, 1472, 1523 |
| BanII | GRGCYC | 5 cut(s) | 55, 89, 850, 920, 978 |
| BbsI | GAAGAC | 1 cut(s) | 1705 |
| Bbv12I | GWGCWC | 2 cut(s) | 920, 1549 |
| BbvI | GCAGC | 3 cut(s) | 490, 1084, 1466 |
| BccI | CCATC | 5 cut(s) | 68, 625, 781, 1593, 1601 |
| BciT130I | CCWGG | 3 cut(s) | 151, 843, 1335 |
| BclI | TGATCA | 1 cut(s) | 1630 |
| BcnI | CCSGG | 1 cut(s) | 66 |
| BcoDI | GTCTC | 2 cut(s) | 174, 355 |
| BfaI | CTAG | 7 cut(s) | 5, 380, 809, 858, 939, 947, 1035 |
| BfmI | CTRYAG | 3 cut(s) | 33, 899, 1566 |
| BfoI | RGCGCY | 1 cut(s) | 446 |
| BfrI | CTTAAG | 1 cut(s) | 407 |
| BfuAI | ACCTGC | 1 cut(s) | 1525 |
| BisI | GCNGC | 3 cut(s) | 504, 1098, 1455 |
| BlnI | CCTAGG | 1 cut(s) | 1034 |
| BlsI | GCNGC | 3 cut(s) | 505, 1099, 1456 |
| Bme1390I | CCNGG | 4 cut(s) | 66, 151, 843, 1335 |
| Bme18I | GGWCC | 4 cut(s) | 68, 319, 1009, 1330 |
| BmeT110I | CYCGRG | 2 cut(s) | 82, 352 |
| BmgT120I | GGNCC | 6 cut(s) | 51, 52, 68, 319, 1009, 1330 |
| BmiI | GGNNCC | 4 cut(s) | 52, 53, 69, 1332 |
| BmrFI | CCNGG | 4 cut(s) | 66, 151, 843, 1335 |
| BmrI | ACTGGG | 1 cut(s) | 115 |
| BmsI | GCATC | 2 cut(s) | 402, 1471 |
| BmtI | GCTAGC | 1 cut(s) | 812 |
| BmuI | ACTGGG | 1 cut(s) | 115 |
| BpiI | GAAGAC | 1 cut(s) | 1705 |
| BpuEI | CTTGAG | 4 cut(s) | 494, 555, 1097, 1755 |
| BpuMI | CCSGG | 1 cut(s) | 66 |
| BsaJI | CCNNGG | 4 cut(s) | 841, 842, 1034, 1333 |
| BsaWI | WCCGGW | 2 cut(s) | 220, 1090 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 150, 631, 690, 1018 |
| Bse1I | ACTGG | 2 cut(s) | 110, 485 |
| BseAI | TCCGGA | 1 cut(s) | 220 |
| BseBI | CCWGG | 3 cut(s) | 151, 843, 1335 |
| BseDI | CCNNGG | 4 cut(s) | 841, 842, 1034, 1333 |
| BseGI | GGATG | 3 cut(s) | 375, 1549, 1633 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 150, 631, 690, 1018 |
| BseMII | CTCAG | 1 cut(s) | 1202 |
| BseNI | ACTGG | 2 cut(s) | 110, 485 |
| BseRI | GAGGAG | 3 cut(s) | 35, 162, 1447 |
| BseSI | GKGCMC | 3 cut(s) | 55, 1472, 1523 |
| BseXI | GCAGC | 3 cut(s) | 490, 1084, 1466 |
| BshFI | GGCC | 3 cut(s) | 53, 344, 620 |
| BsiHKAI | GWGCWC | 2 cut(s) | 920, 1549 |
| BsiHKCI | CYCGRG | 2 cut(s) | 82, 352 |
| BsiSI | CCGG | 4 cut(s) | 65, 221, 317, 1091 |
| BslFI | GGGAC | 3 cut(s) | 966, 1306, 1316 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 150, 631, 690, 1018 |
| BsmAI | GTCTC | 2 cut(s) | 174, 355 |
| BsmFI | GGGAC | 3 cut(s) | 966, 1306, 1316 |
| BsnI | GGCC | 3 cut(s) | 53, 344, 620 |
| BsoBI | CYCGRG | 2 cut(s) | 82, 352 |
| Bsp120I | GGGCCC | 1 cut(s) | 51 |
| Bsp1286I | GDGCHC | 8 cut(s) | 55, 89, 850, 920, 978, 1472, 1523, 1549 |
| Bsp13I | TCCGGA | 1 cut(s) | 220 |
| Bsp143I | GATC | 5 cut(s) | 43, 1207, 1577, 1630, 1732 |
| BspANI | GGCC | 3 cut(s) | 53, 344, 620 |
| BspCNI | CTCAG | 1 cut(s) | 1201 |
| BspEI | TCCGGA | 1 cut(s) | 220 |
| BspHI | TCATGA | 1 cut(s) | 1210 |
| BspLI | GGNNCC | 4 cut(s) | 52, 53, 69, 1332 |
| BspMI | ACCTGC | 1 cut(s) | 1525 |
| BspOI | GCTAGC | 1 cut(s) | 812 |
| BspTI | CTTAAG | 1 cut(s) | 407 |
| BsrI | ACTGG | 2 cut(s) | 110, 485 |
| BssECI | CCNNGG | 4 cut(s) | 841, 842, 1034, 1333 |
| BssMI | GATC | 5 cut(s) | 43, 1207, 1577, 1630, 1732 |
| BssT1I | CCWWGG | 1 cut(s) | 1034 |
| Bst2UI | CCWGG | 3 cut(s) | 151, 843, 1335 |
| Bst4CI | ACNGT | 3 cut(s) | 185, 1478, 1637 |
| Bst6I | CTCTTC | 2 cut(s) | 562, 1240 |
| BstAFI | CTTAAG | 1 cut(s) | 407 |
| BstC8I | GCNNGC | 1 cut(s) | 810 |
| BstDEI | CTNAG | 5 cut(s) | 162, 416, 1132, 1188, 1791 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1016 |
| BstF5I | GGATG | 3 cut(s) | 375, 1549, 1633 |
| BstH2I | RGCGCY | 1 cut(s) | 446 |
| BstHHI | GCGC | 3 cut(s) | 388, 445, 508 |
| BstKTI | GATC | 5 cut(s) | 46, 1210, 1580, 1633, 1735 |
| BstMAI | GTCTC | 2 cut(s) | 174, 355 |
| BstMBI | GATC | 5 cut(s) | 43, 1207, 1577, 1630, 1732 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 59, 412, 617, 854, 982, 1172, 1754 |
| BstNI | CCWGG | 3 cut(s) | 151, 843, 1335 |
| BstNSI | RCATGY | 1 cut(s) | 1175 |
| BstSCI | CCNGG | 4 cut(s) | 64, 149, 841, 1333 |
| BstSFI | CTRYAG | 3 cut(s) | 33, 899, 1566 |
| BstSLI | GKGCMC | 3 cut(s) | 55, 1472, 1523 |
| BstV1I | GCAGC | 3 cut(s) | 490, 1084, 1466 |
| BstV2I | GAAGAC | 1 cut(s) | 1705 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1159 |
| BsuRI | GGCC | 3 cut(s) | 53, 344, 620 |
| BtsCI | GGATG | 3 cut(s) | 375, 1549, 1633 |
| BtsI | GCAGTG | 1 cut(s) | 618 |
| BtsIMutI | CAGTG | 3 cut(s) | 618, 1474, 1633 |
| BveI | ACCTGC | 1 cut(s) | 1525 |
| Cac8I | GCNNGC | 1 cut(s) | 810 |
| CciI | TCATGA | 1 cut(s) | 1210 |
| CfoI | GCGC | 3 cut(s) | 388, 445, 508 |
| Cfr13I | GGNCC | 6 cut(s) | 51, 52, 68, 319, 1009, 1330 |
| CseI | GACGC | 1 cut(s) | 963 |
| Csp6I | GTAC | 3 cut(s) | 186, 426, 656 |
| CviAII | CATG | 7 cut(s) | 454, 769, 833, 1172, 1211, 1350, 1736 |
| CviQI | GTAC | 3 cut(s) | 186, 426, 656 |
| DdeI | CTNAG | 5 cut(s) | 162, 416, 1132, 1188, 1791 |
| DpnI | GATC | 5 cut(s) | 45, 1209, 1579, 1632, 1734 |
| DpnII | GATC | 5 cut(s) | 43, 1207, 1577, 1630, 1732 |
| Eam1104I | CTCTTC | 2 cut(s) | 562, 1240 |
| EarI | CTCTTC | 2 cut(s) | 562, 1240 |
| Ecl136II | GAGCTC | 1 cut(s) | 918 |
| Eco130I | CCWWGG | 1 cut(s) | 1034 |
| Eco24I | GRGCYC | 5 cut(s) | 55, 89, 850, 920, 978 |
| Eco47I | GGWCC | 4 cut(s) | 68, 319, 1009, 1330 |
| Eco47III | AGCGCT | 1 cut(s) | 444 |
| Eco53kI | GAGCTC | 1 cut(s) | 918 |
| Eco88I | CYCGRG | 2 cut(s) | 82, 352 |
| EcoICRI | GAGCTC | 1 cut(s) | 918 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1016 |
| EcoO109I | RGGNCCY | 2 cut(s) | 51, 52 |
| EcoRII | CCWGG | 3 cut(s) | 149, 841, 1333 |
| EcoT14I | CCWWGG | 1 cut(s) | 1034 |
| EcoT38I | GRGCYC | 5 cut(s) | 55, 89, 850, 920, 978 |
| ErhI | CCWWGG | 1 cut(s) | 1034 |
| FaeI | CATG | 7 cut(s) | 457, 772, 836, 1175, 1214, 1353, 1739 |
| FaqI | GGGAC | 3 cut(s) | 966, 1306, 1316 |
| FatI | CATG | 7 cut(s) | 453, 768, 832, 1171, 1210, 1349, 1735 |
| FbaI | TGATCA | 1 cut(s) | 1630 |
| Fnu4HI | GCNGC | 3 cut(s) | 504, 1098, 1455 |
| FokI | GGATG | 3 cut(s) | 362, 1536, 1640 |
| FriOI | GRGCYC | 5 cut(s) | 55, 89, 850, 920, 978 |
| Fsp4HI | GCNGC | 3 cut(s) | 504, 1098, 1455 |
| FspBI | CTAG | 7 cut(s) | 5, 380, 809, 858, 939, 947, 1035 |
| GlaI | GCGC | 3 cut(s) | 387, 444, 507 |
| GluI | GCNGC | 3 cut(s) | 504, 1098, 1455 |
| HaeII | RGCGCY | 1 cut(s) | 446 |
| HaeIII | GGCC | 3 cut(s) | 53, 344, 620 |
| HapII | CCGG | 4 cut(s) | 65, 221, 317, 1091 |
| HgaI | GACGC | 1 cut(s) | 963 |
| HhaI | GCGC | 3 cut(s) | 388, 445, 508 |
| Hin1II | CATG | 7 cut(s) | 457, 772, 836, 1175, 1214, 1353, 1739 |
| Hin6I | GCGC | 3 cut(s) | 386, 443, 506 |
| HinP1I | GCGC | 3 cut(s) | 386, 443, 506 |
| HincII | GTYRAC | 1 cut(s) | 478 |
| HindII | GTYRAC | 1 cut(s) | 478 |
| HinfI | GANTC | 8 cut(s) | 274, 334, 364, 568, 1030, 1121, 1228, 1571 |
| HpaII | CCGG | 4 cut(s) | 65, 221, 317, 1091 |
| HphI | GGTGA | 1 cut(s) | 1256 |
| Hpy166II | GTNNAC | 2 cut(s) | 478, 1009 |
| Hpy8I | GTNNAC | 2 cut(s) | 478, 1009 |
| Hpy99I | CGWCG | 1 cut(s) | 679 |
| HpyAV | CCTTC | 7 cut(s) | 425, 933, 971, 1012, 1053, 1681, 1687 |
| HpyCH4III | ACNGT | 3 cut(s) | 185, 1478, 1637 |
| HpyCH4IV | ACGT | 1 cut(s) | 1370 |
| HpyCH4V | TGCA | 5 cut(s) | 611, 721, 1100, 1271, 1757 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 59, 412, 617, 854, 982, 1172, 1754 |
| HpyF3I | CTNAG | 5 cut(s) | 162, 416, 1132, 1188, 1791 |
| HpySE526I | ACGT | 1 cut(s) | 1370 |
| Hsp92II | CATG | 7 cut(s) | 457, 772, 836, 1175, 1214, 1353, 1739 |
| HspAI | GCGC | 3 cut(s) | 386, 443, 506 |
| Kpn2I | TCCGGA | 1 cut(s) | 220 |
| Ksp22I | TGATCA | 1 cut(s) | 1630 |
| Kzo9I | GATC | 5 cut(s) | 43, 1207, 1577, 1630, 1732 |
| LmnI | GCTCC | 2 cut(s) | 67, 915 |
| Lsp1109I | GCAGC | 3 cut(s) | 490, 1084, 1466 |
| LweI | GCATC | 2 cut(s) | 402, 1471 |
| MaeI | CTAG | 7 cut(s) | 5, 380, 809, 858, 939, 947, 1035 |
| MaeII | ACGT | 1 cut(s) | 1370 |
| MaeIII | GTNAC | 4 cut(s) | 10, 257, 749, 1637 |
| MalI | GATC | 5 cut(s) | 45, 1209, 1579, 1632, 1734 |
| MboI | GATC | 5 cut(s) | 43, 1207, 1577, 1630, 1732 |
| MboII | GAAGA | 9 cut(s) | 538, 549, 552, 663, 739, 1227, 1230, 1578, 1705 |
| MhlI | GDGCHC | 8 cut(s) | 55, 89, 850, 920, 978, 1472, 1523, 1549 |
| MlyI | GAGTC | 2 cut(s) | 562, 1222 |
| MmeI | TCCRAC | 3 cut(s) | 318, 530, 803 |
| MroI | TCCGGA | 1 cut(s) | 220 |
| MseI | TTAA | 5 cut(s) | 57, 408, 519, 1002, 1365 |
| MslI | CAYNNNNRTG | 2 cut(s) | 380, 1479 |
| MspCI | CTTAAG | 1 cut(s) | 407 |
| MspI | CCGG | 4 cut(s) | 65, 221, 317, 1091 |
| MspR9I | CCNGG | 4 cut(s) | 66, 151, 843, 1335 |
| MvaI | CCWGG | 3 cut(s) | 151, 843, 1335 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 59, 412, 617, 854, 982, 1172, 1754 |
| NciI | CCSGG | 1 cut(s) | 66 |
| NdeII | GATC | 5 cut(s) | 43, 1207, 1577, 1630, 1732 |
| NheI | GCTAGC | 1 cut(s) | 808 |
| NlaIII | CATG | 7 cut(s) | 457, 772, 836, 1175, 1214, 1353, 1739 |
| NlaIV | GGNNCC | 4 cut(s) | 52, 53, 69, 1332 |
| NmuCI | GTSAC | 2 cut(s) | 749, 1637 |
| NspI | RCATGY | 1 cut(s) | 1175 |
| PagI | TCATGA | 1 cut(s) | 1210 |
| PasI | CCCWGGG | 1 cut(s) | 842 |
| PfeI | GAWTC | 6 cut(s) | 274, 334, 364, 1030, 1121, 1571 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 690 |
| PfoI | TCCNGGA | 1 cut(s) | 149 |
| PkrI | GCNGC | 3 cut(s) | 505, 1099, 1456 |
| PleI | GAGTC | 2 cut(s) | 562, 1222 |
| PpsI | GAGTC | 2 cut(s) | 562, 1222 |
| Psp124BI | GAGCTC | 1 cut(s) | 920 |
| Psp1406I | AACGTT | 1 cut(s) | 1370 |
| Psp6I | CCWGG | 3 cut(s) | 149, 841, 1333 |
| PspGI | CCWGG | 3 cut(s) | 149, 841, 1333 |
| PspN4I | GGNNCC | 4 cut(s) | 52, 53, 69, 1332 |
| PspOMI | GGGCCC | 1 cut(s) | 51 |
| PspPI | GGNCC | 6 cut(s) | 51, 52, 68, 319, 1009, 1330 |
| RsaI | GTAC | 3 cut(s) | 187, 427, 657 |
| RsaNI | GTAC | 3 cut(s) | 186, 426, 656 |
| RseI | CAYNNNNRTG | 2 cut(s) | 380, 1479 |
| SacI | GAGCTC | 1 cut(s) | 920 |
| SaqAI | TTAA | 5 cut(s) | 57, 408, 519, 1002, 1365 |
| SatI | GCNGC | 3 cut(s) | 504, 1098, 1455 |
| Sau3AI | GATC | 5 cut(s) | 43, 1207, 1577, 1630, 1732 |
| Sau96I | GGNCC | 6 cut(s) | 51, 52, 68, 319, 1009, 1330 |
| SchI | GAGTC | 2 cut(s) | 562, 1222 |
| ScrFI | CCNGG | 4 cut(s) | 66, 151, 843, 1335 |
| SduI | GDGCHC | 8 cut(s) | 55, 89, 850, 920, 978, 1472, 1523, 1549 |
| SfaNI | GCATC | 2 cut(s) | 402, 1471 |
| SfcI | CTRYAG | 3 cut(s) | 33, 899, 1566 |
| SinI | GGWCC | 4 cut(s) | 68, 319, 1009, 1330 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 380, 1479 |
| SmlI | CTYRAG | 5 cut(s) | 407, 509, 570, 1076, 1770 |
| SmoI | CTYRAG | 5 cut(s) | 407, 509, 570, 1076, 1770 |
| SspMI | CTAG | 7 cut(s) | 5, 380, 809, 858, 939, 947, 1035 |
| SstI | GAGCTC | 1 cut(s) | 920 |
| StyD4I | CCNGG | 4 cut(s) | 64, 149, 841, 1333 |
| StyI | CCWWGG | 1 cut(s) | 1034 |
| TaaI | ACNGT | 3 cut(s) | 185, 1478, 1637 |
| TaiI | ACGT | 1 cut(s) | 1373 |
| TaqI | TCGA | 3 cut(s) | 1409, 1576, 1731 |
| TaqII | GACCGA | 1 cut(s) | 1318 |
| TatI | WGTACW | 1 cut(s) | 185 |
| TfiI | GAWTC | 6 cut(s) | 274, 334, 364, 1030, 1121, 1571 |
| Tru1I | TTAA | 5 cut(s) | 57, 408, 519, 1002, 1365 |
| Tru9I | TTAA | 5 cut(s) | 57, 408, 519, 1002, 1365 |
| TscAI | CASTG | 3 cut(s) | 618, 1481, 1640 |
| TseFI | GTSAC | 2 cut(s) | 749, 1637 |
| TseI | GCWGC | 3 cut(s) | 503, 1097, 1454 |
| Tsp45I | GTSAC | 2 cut(s) | 749, 1637 |
| TspDTI | ATGAA | 3 cut(s) | 470, 821, 1430 |
| TspGWI | ACGGA | 1 cut(s) | 443 |
| TspRI | CASTG | 3 cut(s) | 618, 1481, 1640 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 690 |
| Vha464I | CTTAAG | 1 cut(s) | 407 |
| VpaK11BI | GGWCC | 4 cut(s) | 68, 319, 1009, 1330 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1016 |
| XapI | RAATTY | 1 cut(s) | 649 |
| XceI | RCATGY | 1 cut(s) | 1175 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 849, 1341 |
| XmaJI | CCTAGG | 1 cut(s) | 1034 |
| XspI | CTAG | 7 cut(s) | 5, 380, 809, 858, 939, 947, 1035 |