Prupe.3G120300_v2.0.a1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000194
Physical Location & Seq
Forward (+)
10592427 .. 10595350
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G120300.1

Sequence Viewer

Length: 2583 bp
ATGGAGAAGGCGGGGCTCATTGATTTGGGTTACCATGGATCAAGCTTCACTTGGAGGGCTCTTAGGCAGAATGGTATTTTTGTTCAGGAAAGACTTGATAGAGTTTTAGGGAACTTACCATGGCAGGAGTCATGCCCAAATACTTTCATTAGTCACCACCCAGCAATCGGTTCGGATCACAATCCACTGGTCTTGGAGACAACCATGTATCATAAAAATCATAGAAGGCAGTTCAAGTTTGAAGCTTATTGGGCCGATGAGCTTCAACATTGCACTACCCTCCTTAAAAAATGGAGCAGAGAAAAGTTCTCAAACAATAAGAAGAGAATGGAGGCCCTTCACGCTGAGCTCAATGAAAAGCAATTAAGGTGGGATGAGAATCATGTGGAGATAAGGCGCATCACTCAGGAGATAACCGAAACTGGGGCAAGAGAGGAACAATATTGGCATCAGCGGTCAAGGATAAAGTGGCTTTCAAAGGGGGATGCCAATACTGCTTTCTTCCACCAATCTATGCTGGCCCGTAGACTACAGAATTGTATCCTTAGAATTAAGGGCGATGATGGGCGTTGGCATGTGGGTGAGCAAGCCGTCAAGAGGGTGTTTGAAGAGCATTTCAAGAATTTGTTCACTTTTGAGGCTCAATCCATTAATCGTGATATTCTTGATTGTGTTGACAGTGTGATCTCCCAAACTACCAATGACAACTTATTGCAAGCAATTACTATGGAAGAGATAAAGGAGGCTGCAATGCAGATGGGAGGTTTAAAGGCTCCAGGTCCAGATGGATATCAAGGAATTTTCTTTCACAAATATTGGGACACTATTTATGATGAAATCAGAGGCATCACAGAGGATTTCTTCCGAAACAATCAGAGTCTTGGTGCTTTGAATACTACAAACCTGGTTTTAATTCCCAAAATTCCAAACCCTGAGGGAGTTTCTCATTTTCGCCCAATTAGCCTATGTAATTTCTCTTTCAAGATTGTATCTAAAGTTATGGCAAATAGATTGAAGGTTTTTTTGCCTCAGATCATCTCTCCGGCTCAAAATGCTTTTGTCCCGAACCGTCAAATTCAGGAGAATATTTTAATCGCCCATGAAGCTTTCCACATTTTAAAGCTACGAAAGACAACAAAAATGTACGATTTTGGCATTAAACTTGATATGAACAAGGCTTATGATAGGGTGGAGTGGCATTTCTTGGAATCGGTCATGCTCAAGATGGGTTTTGATGTTCGTTGGGTCAACTTGGTGATGAATTTGGTCCGTACTGTGCAATTCTCGTTGGTCTTGAATGGGGTGCAAGGTAACACTTTTACACCAACGAGGGGCATCCAACAAGTCGATCCACTATCACCGTACTTGTTTTTGATTGTGAGTGAGGTCCTCTCCCTCATGATTAAAAAAGCATGTGAGGCTAATTACATGCAATGCCTAAAGTTTGGAAGAAGTGGACCTACCCTCTCTCACCTTCTTTTTGCGGATGATGCCCTCTTTTTTATCAGGGCTAATACTCAGAACTGTCGTAATATTCCCAATACACCTGCAAGTATCCGCGCGCAGTTGGGTGCCATTCTTGGTATGACTATGGTTGATGACCCAGGTAAATACTTGGGACTTCCCACAATGTGGGGGAGGTCTAAGAAGGAGGCACTGCAGTTTGTGAGGGAGAAGTTGTGCCGTAAGTTAAGCGGATGGAAACAATCCCTTCTCTCACAAGCCAGTAGGGAGGTCCTTATCAAAGTTGTTGCTCAAGCTGTCCCGAATTATCCTATGGGAGTTTTCTTATTCCCTAAAATGTTCTGTACGAAGATGGAGTCTGAGATTGCCAATTTCTGGTGGGGCCAAAAACAGGAAGAAAGGAAGATCCATTGGGTACGTTGGACCGAATTGGGCCTGCCAAAGCATGAAGGGGGTATGGGCTTCTGTGACTTTCATGATTTCAATTTGGCTCTATTAGCTAAACAGTGCTGGCGGCTTCTCACAGAACTGAATTCTGTCTGGGCTCGTTTAATCAAAGCTCGCTATTTCCCGGAGTGTAATTTTATGGAGGCCACCAAGGGTAGCAGGGGGTCGTGGGCGTGGGCTAGTCTCATTGAAGGAAGAAAGGTGATCCTAAATGGGGCAAGATGCTCGGAGGTAGATCGCCTAGTGTGGTCGGATGAGAAAAATGGAAAATACTCGGTAAAATCTGGTTATCACAACATTCATACTCATCATCACCGCAGCTCCGTGTGTAGACCTTCTTCCTCTATGTCCATCGACCAAAGGGTCTGGAAGTTGATTTGGCACGCGGATGTCACACAAAAAATTCGCCATTTCTTTTGGAGAGATTTAAATGGCCACGTGGCTGTCTCATCTGTTCTTTATAAGAAAAAGCTGCGCAACTCTCCCTTATGTCCAATTTGCAATGATCATGAGGAGACAATTGAGCACATGTTATTACTTTGCCCTTGGGTTGAACCTATCTGGTTCGGAGGCCTAACCTATAGAGTTGATAGGCAGCAAAATTCTTCTCTGCATACATGGTTGCGGGATTGCGTGATCATAGCCCTTAACACAAAGGAGGAGAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

861

Amino Acids

99.98

Weight (kDa)

9.24

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2373
AarI CACCTGC 1 cut(s) 1555
AasI GACNNNNNNGTC 1 cut(s) 2273
Acc16I TGCGCA 1 cut(s) 2387
Acc36I ACCTGC 1 cut(s) 1555
AccB1I GGYRCC 1 cut(s) 1571
AccB7I CCANNNNNTGG 2 cut(s) 1632, 1839
AccI GTMKAC 2 cut(s) 526, 2242
AccII CGCG 3 cut(s) 1560, 1562, 2297
AciI CCGC 9 cut(s) 11, 454, 1484, 1558, 1695, 1978, 2227, 2297, 2536
AclWI GGATC 5 cut(s) 46, 183, 1343, 1864, 2110
AcoI YGGCCR 1 cut(s) 2344
AcsI RAATTY 8 cut(s) 622, 798, 921, 1074, 1261, 1996, 2313, 2512
AcvI CACGTG 1 cut(s) 2350
AdeI CACNNNGTG 1 cut(s) 1632
AfaI GTAC 5 cut(s) 1145, 1273, 1364, 1810, 1881
AfiI CCNNNNNNNGG 8 cut(s) 167, 423, 597, 1331, 1632, 1839, 1855, 2125
AflIII ACRYGT 1 cut(s) 2439
AjnI CCWGG 3 cut(s) 775, 903, 1603
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
Alw21I GWGCWC 2 cut(s) 351, 2439
Alw26I GTCTC 4 cut(s) 191, 2099, 2362, 2420
AlwI GGATC 5 cut(s) 46, 183, 1343, 1864, 2110
AoxI GGCC 8 cut(s) 252, 333, 519, 1846, 1897, 2055, 2344, 2482
ApeKI GCWGC 4 cut(s) 746, 2229, 2383, 2506
ApoI RAATTY 8 cut(s) 622, 798, 921, 1074, 1261, 1996, 2313, 2512
ArsI GACNNNNNNTTYG 2 cut(s) 1805, 1837
AseI ATTAAT 1 cut(s) 651
Asp700I GAANNNNTTC 1 cut(s) 626
AspLEI GCGC 4 cut(s) 399, 1562, 1564, 2388
AsuC2I CCSGG 1 cut(s) 2036
AsuHPI GGTGA 7 cut(s) 146, 593, 1267, 1350, 1463, 2125, 2216
AvaII GGWCC 6 cut(s) 779, 1267, 1387, 1457, 1735, 1887
AxyI CCTNAGG 1 cut(s) 933
BalI TGGCCA 1 cut(s) 2346
BanI GGYRCC 1 cut(s) 1571
BanII GRGCYC 4 cut(s) 18, 61, 351, 2011
BarI GAAGNNNNNNTAC 4 cut(s) 1444, 1476, 2233, 2265
BbrPI CACGTG 1 cut(s) 2350
Bbv12I GWGCWC 2 cut(s) 351, 2439
BbvI GCAGC 4 cut(s) 733, 2241, 2370, 2518
BccI CCATC 7 cut(s) 557, 751, 779, 1219, 1692, 1810, 2270
BceAI ACGGC 2 cut(s) 575, 1668
BcgI CGANNNNNNTGC 4 cut(s) 153, 187, 2118, 2152
BciT130I CCWGG 3 cut(s) 777, 905, 1605
BciVI GTATCC 2 cut(s) 551, 1565
BclI TGATCA 2 cut(s) 2416, 2547
BcnI CCSGG 1 cut(s) 2036
BcoDI GTCTC 4 cut(s) 191, 2099, 2362, 2420
BfaI CTAG 2 cut(s) 2091, 2153
BfmI CTRYAG 3 cut(s) 530, 1658, 2491
BfuAI ACCTGC 1 cut(s) 1555
BfuI GTATCC 2 cut(s) 551, 1565
BisI GCNGC 5 cut(s) 747, 1979, 2230, 2384, 2507
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 5 cut(s) 748, 1980, 2231, 2385, 2508
Bme1390I CCNGG 4 cut(s) 777, 905, 1605, 2036
Bme18I GGWCC 6 cut(s) 779, 1267, 1387, 1457, 1735, 1887
BmiI GGNNCC 3 cut(s) 774, 1573, 1847
BmrFI CCNGG 4 cut(s) 777, 905, 1605, 2036
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 7 cut(s) 408, 457, 475, 855, 1344, 1480, 2123
BmuI ACTGGG 1 cut(s) 432
BplI GAGNNNNNCTC 2 cut(s) 1376, 1408
BpmI CTGGAG 1 cut(s) 759
Bpu1102I GCTNAGC 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 1205, 1740
BpuMI CCSGG 1 cut(s) 2036
BsaAI YACGTR 1 cut(s) 2350
BsaBI GATNNNNATC 3 cut(s) 180, 378, 789
BsaJI CCNNGG 5 cut(s) 34, 119, 1603, 2061, 2456
BsaXI ACNNNNNCTCC 4 cut(s) 1664, 1694, 2216, 2246
Bsc4I CCNNNNNNNGG 8 cut(s) 167, 423, 597, 1331, 1632, 1839, 1855, 2125
Bse1I ACTGG 3 cut(s) 192, 427, 1725
Bse21I CCTNAGG 1 cut(s) 933
Bse3DI GCAATG 4 cut(s) 268, 756, 1439, 2419
Bse8I GATNNNNATC 3 cut(s) 180, 378, 789
BseBI CCWGG 3 cut(s) 777, 905, 1605
BseDI CCNNGG 5 cut(s) 34, 119, 1603, 2061, 2456
BseGI GGATG 7 cut(s) 379, 490, 1335, 1492, 1703, 2170, 2305
BseJI GATNNNNATC 3 cut(s) 180, 378, 789
BseLI CCNNNNNNNGG 8 cut(s) 167, 423, 597, 1331, 1632, 1839, 1855, 2125
BseMI GCAATG 4 cut(s) 268, 756, 1439, 2419
BseMII CTCAG 6 cut(s) 336, 419, 924, 1043, 1532, 1815
BseNI ACTGG 3 cut(s) 192, 427, 1725
BsePI GCGCGC 1 cut(s) 1560
BseRI GAGGAG 1 cut(s) 2438
BseXI GCAGC 4 cut(s) 733, 2241, 2370, 2518
BseYI CCCAGC 1 cut(s) 160
Bsh1236I CGCG 3 cut(s) 1560, 1562, 2297
BshFI GGCC 8 cut(s) 254, 335, 521, 1848, 1899, 2057, 2346, 2484
BshNI GGYRCC 1 cut(s) 1571
BsiHKAI GWGCWC 2 cut(s) 351, 2439
BsiSI CCGG 2 cut(s) 1043, 2036
BslFI GGGAC 4 cut(s) 833, 1046, 1632, 1748
BslI CCNNNNNNNGG 8 cut(s) 167, 423, 597, 1331, 1632, 1839, 1855, 2125
BsmAI GTCTC 4 cut(s) 191, 2099, 2362, 2420
BsmFI GGGAC 4 cut(s) 833, 1046, 1632, 1748
BsnI GGCC 8 cut(s) 254, 335, 521, 1848, 1899, 2057, 2346, 2484
Bsp1286I GDGCHC 5 cut(s) 18, 61, 351, 2011, 2439
Bsp1720I GCTNAGC 1 cut(s) 345
Bsp19I CCATGG 2 cut(s) 34, 119
BspACI CCGC 9 cut(s) 11, 454, 1484, 1558, 1695, 1978, 2227, 2297, 2536
BspANI GGCC 8 cut(s) 254, 335, 521, 1848, 1899, 2057, 2346, 2484
BspCNI CTCAG 6 cut(s) 337, 418, 925, 1042, 1531, 1816
BspFNI CGCG 3 cut(s) 1560, 1562, 2297
BspHI TCATGA 3 cut(s) 1398, 1939, 2419
BspLI GGNNCC 3 cut(s) 774, 1573, 1847
BspMAI CTGCAG 1 cut(s) 1662
BspMI ACCTGC 1 cut(s) 1555
BspPI GGATC 5 cut(s) 46, 183, 1343, 1864, 2110
BspQI GCTCTTC 1 cut(s) 603
BspT107I GGYRCC 1 cut(s) 1571
BsrDI GCAATG 4 cut(s) 268, 756, 1439, 2419
BsrI ACTGG 3 cut(s) 192, 427, 1725
BssECI CCNNGG 5 cut(s) 34, 119, 1603, 2061, 2456
BssHII GCGCGC 1 cut(s) 1560
BssT1I CCWWGG 4 cut(s) 34, 119, 2061, 2456
Bst2UI CCWGG 3 cut(s) 777, 905, 1605
Bst4CI ACNGT 6 cut(s) 680, 1070, 1276, 1362, 1526, 1971
Bst6I CTCTTC 3 cut(s) 317, 603, 726
BstBAI YACGTR 1 cut(s) 2350
BstC8I GCNNGC 8 cut(s) 519, 588, 717, 1562, 1901, 1976, 2026, 2295
BstDEI CTNAG 9 cut(s) 62, 345, 405, 545, 933, 1029, 1518, 1644, 1824
BstDSI CCRYGG 2 cut(s) 34, 119
BstEII GGTNACC 1 cut(s) 29
BstF5I GGATG 7 cut(s) 379, 490, 1335, 1492, 1703, 2170, 2305
BstFNI CGCG 3 cut(s) 1560, 1562, 2297
BstHHI GCGC 4 cut(s) 399, 1562, 1564, 2388
BstMAI GTCTC 4 cut(s) 191, 2099, 2362, 2420
BstMWI GCNNNNNNNGC 9 cut(s) 251, 341, 494, 960, 1052, 1103, 1418, 1490, 1961
BstNI CCWGG 3 cut(s) 777, 905, 1605
BstNSI RCATGY 4 cut(s) 578, 1416, 1432, 2443
BstPI GGTNACC 1 cut(s) 29
BstSCI CCNGG 4 cut(s) 775, 903, 1603, 2034
BstSFI CTRYAG 3 cut(s) 530, 1658, 2491
BstUI CGCG 3 cut(s) 1560, 1562, 2297
BstV1I GCAGC 4 cut(s) 733, 2241, 2370, 2518
BstX2I RGATCY 1 cut(s) 1869
BstYI RGATCY 1 cut(s) 1869
Bsu36I CCTNAGG 1 cut(s) 933
BsuI GTATCC 2 cut(s) 551, 1565
BsuRI GGCC 8 cut(s) 254, 335, 521, 1848, 1899, 2057, 2346, 2484
BtgI CCRYGG 2 cut(s) 34, 119
BtgZI GCGATG 1 cut(s) 573
BtsCI GGATG 7 cut(s) 379, 490, 1335, 1492, 1703, 2170, 2305
BtsI GCAGTG 1 cut(s) 1655
BtsIMutI CAGTG 4 cut(s) 185, 685, 1655, 1976
BveI ACCTGC 1 cut(s) 1555
Cac8I GCNNGC 8 cut(s) 519, 588, 717, 1562, 1901, 1976, 2026, 2295
CciI TCATGA 3 cut(s) 1398, 1939, 2419
CfoI GCGC 4 cut(s) 399, 1562, 1564, 2388
CsiI ACCWGGT 1 cut(s) 903
Csp6I GTAC 5 cut(s) 1144, 1272, 1363, 1809, 1880
CspCI CAANNNNNGTGG 4 cut(s) 174, 209, 350, 385
CviQI GTAC 5 cut(s) 1144, 1272, 1363, 1809, 1880
DdeI CTNAG 9 cut(s) 62, 345, 405, 545, 933, 1029, 1518, 1644, 1824
DraI TTTAAA 3 cut(s) 768, 1119, 2340
DraIII CACNNNGTG 1 cut(s) 1632
DrdI GACNNNNNNGTC 1 cut(s) 2273
DseDI GACNNNNNNGTC 1 cut(s) 2273
EaeI YGGCCR 1 cut(s) 2344
Eam1104I CTCTTC 3 cut(s) 317, 603, 726
EarI CTCTTC 3 cut(s) 317, 603, 726
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 4 cut(s) 34, 119, 2061, 2456
Eco147I AGGCCT 1 cut(s) 2484
Eco24I GRGCYC 4 cut(s) 18, 61, 351, 2011
Eco32I GATATC 1 cut(s) 791
Eco47I GGWCC 6 cut(s) 779, 1267, 1387, 1457, 1735, 1887
Eco53kI GAGCTC 1 cut(s) 349
Eco72I CACGTG 1 cut(s) 2350
Eco81I CCTNAGG 1 cut(s) 933
Eco91I GGTNACC 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 349
EcoO109I RGGNCCY 3 cut(s) 334, 1387, 1735
EcoO65I GGTNACC 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 1996
EcoRII CCWGG 3 cut(s) 775, 903, 1603
EcoRV GATATC 1 cut(s) 791
EcoT14I CCWWGG 4 cut(s) 34, 119, 2061, 2456
EcoT38I GRGCYC 4 cut(s) 18, 61, 351, 2011
ErhI CCWWGG 4 cut(s) 34, 119, 2061, 2456
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FaqI GGGAC 4 cut(s) 833, 1046, 1632, 1748
FauI CCCGC 2 cut(s) 4, 2529
FbaI TGATCA 2 cut(s) 2416, 2547
FblI GTMKAC 2 cut(s) 526, 2242
Fnu4HI GCNGC 5 cut(s) 747, 1979, 2230, 2384, 2507
FokI GGATG 7 cut(s) 386, 497, 1322, 1499, 1710, 2177, 2312
FriOI GRGCYC 4 cut(s) 18, 61, 351, 2011
Fsp4HI GCNGC 5 cut(s) 747, 1979, 2230, 2384, 2507
FspBI CTAG 2 cut(s) 2091, 2153
FspI TGCGCA 1 cut(s) 2387
GlaI GCGC 4 cut(s) 398, 1561, 1563, 2387
GluI GCNGC 5 cut(s) 747, 1979, 2230, 2384, 2507
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 759
HaeIII GGCC 8 cut(s) 254, 335, 521, 1848, 1899, 2057, 2346, 2484
HapII CCGG 2 cut(s) 1043, 2036
HhaI GCGC 4 cut(s) 399, 1562, 1564, 2388
Hin6I GCGC 4 cut(s) 397, 1560, 1562, 2386
HinP1I GCGC 4 cut(s) 397, 1560, 1562, 2386
HincII GTYRAC 2 cut(s) 676, 1249
HindII GTYRAC 2 cut(s) 676, 1249
HindIII AAGCTT 3 cut(s) 43, 243, 1104
HinfI GANTC 5 cut(s) 128, 379, 877, 1208, 1820
HpaII CCGG 2 cut(s) 1043, 2036
HphI GGTGA 7 cut(s) 146, 593, 1267, 1350, 1463, 2125, 2216
Hpy166II GTNNAC 6 cut(s) 527, 630, 676, 1249, 1457, 2243
Hpy8I GTNNAC 6 cut(s) 527, 630, 676, 1249, 1457, 2243
HpyAV CCTTC 9 cut(s) 219, 347, 1009, 1484, 1642, 1721, 1907, 2096, 2256
HpyCH4III ACNGT 6 cut(s) 680, 1070, 1276, 1362, 1526, 1971
HpyCH4IV ACGT 2 cut(s) 1882, 2349
HpyF10VI GCNNNNNNNGC 9 cut(s) 251, 341, 494, 960, 1052, 1103, 1418, 1490, 1961
HpyF3I CTNAG 9 cut(s) 62, 345, 405, 545, 933, 1029, 1518, 1644, 1824
HpySE526I ACGT 2 cut(s) 1882, 2349
HspAI GCGC 4 cut(s) 397, 1560, 1562, 2386
Ksp22I TGATCA 2 cut(s) 2416, 2547
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 3 cut(s) 294, 778, 2237
Lsp1109I GCAGC 4 cut(s) 733, 2241, 2370, 2518
LweI GCATC 7 cut(s) 408, 457, 475, 855, 1344, 1480, 2123
MabI ACCWGGT 1 cut(s) 903
MaeI CTAG 2 cut(s) 2091, 2153
MaeII ACGT 2 cut(s) 1882, 2349
MaeIII GTNAC 5 cut(s) 29, 152, 1310, 1931, 2302
MfeI CAATTG 1 cut(s) 2430
MflI RGATCY 1 cut(s) 1869
MhlI GDGCHC 5 cut(s) 18, 61, 351, 2011, 2439
MlsI TGGCCA 1 cut(s) 2346
MluNI TGGCCA 1 cut(s) 2346
MlyI GAGTC 3 cut(s) 137, 886, 1829
MmeI TCCRAC 3 cut(s) 1363, 1865, 2142
Mox20I TGGCCA 1 cut(s) 2346
MroXI GAANNNNTTC 1 cut(s) 626
MscI TGGCCA 1 cut(s) 2346
MslI CAYNNNNRTG 2 cut(s) 579, 2298
Msp20I TGGCCA 1 cut(s) 2346
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 2 cut(s) 1043, 2036
MspR9I CCNGG 4 cut(s) 777, 905, 1605, 2036
MunI CAATTG 1 cut(s) 2430
MvaI CCWGG 3 cut(s) 777, 905, 1605
MvnI CGCG 3 cut(s) 1560, 1562, 2297
MwoI GCNNNNNNNGC 9 cut(s) 251, 341, 494, 960, 1052, 1103, 1418, 1490, 1961
NciI CCSGG 1 cut(s) 2036
NcoI CCATGG 2 cut(s) 34, 119
NlaIV GGNNCC 3 cut(s) 774, 1573, 1847
NmuCI GTSAC 3 cut(s) 152, 1931, 2302
NsbI TGCGCA 1 cut(s) 2387
NspI RCATGY 4 cut(s) 578, 1416, 1432, 2443
PagI TCATGA 3 cut(s) 1398, 1939, 2419
PaqCI CACCTGC 1 cut(s) 1555
PauI GCGCGC 1 cut(s) 1560
PceI AGGCCT 1 cut(s) 2484
PciI ACATGT 1 cut(s) 2439
PciSI GCTCTTC 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 626
PfeI GAWTC 2 cut(s) 379, 1208
PflMI CCANNNNNTGG 2 cut(s) 1632, 1839
PfoI TCCNGGA 1 cut(s) 2034
PkrI GCNGC 5 cut(s) 748, 1980, 2231, 2385, 2508
PleI GAGTC 3 cut(s) 136, 885, 1828
PmaCI CACGTG 1 cut(s) 2350
PmlI CACGTG 1 cut(s) 2350
PpsI GAGTC 3 cut(s) 136, 885, 1828
Ppu21I YACGTR 1 cut(s) 2350
PpuMI RGGWCCY 2 cut(s) 1387, 1735
PscI ACATGT 1 cut(s) 2439
PshBI ATTAAT 1 cut(s) 651
PsiI TTATAA 1 cut(s) 2373
Psp124BI GAGCTC 1 cut(s) 351
Psp5II RGGWCCY 2 cut(s) 1387, 1735
Psp6I CCWGG 3 cut(s) 775, 903, 1603
PspCI CACGTG 1 cut(s) 2350
PspEI GGTNACC 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 3 cut(s) 775, 903, 1603
PspN4I GGNNCC 3 cut(s) 774, 1573, 1847
PspPPI RGGWCCY 2 cut(s) 1387, 1735
PstI CTGCAG 1 cut(s) 1662
PsuI RGATCY 1 cut(s) 1869
PteI GCGCGC 1 cut(s) 1560
RsaI GTAC 5 cut(s) 1145, 1273, 1364, 1810, 1881
RsaNI GTAC 5 cut(s) 1144, 1272, 1363, 1809, 1880
RseI CAYNNNNRTG 2 cut(s) 579, 2298
SacI GAGCTC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 603
SatI GCNGC 5 cut(s) 747, 1979, 2230, 2384, 2507
SchI GAGTC 3 cut(s) 137, 886, 1829
ScrFI CCNGG 4 cut(s) 777, 905, 1605, 2036
SduI GDGCHC 5 cut(s) 18, 61, 351, 2011, 2439
SexAI ACCWGGT 1 cut(s) 903
SfaNI GCATC 7 cut(s) 408, 457, 475, 855, 1344, 1480, 2123
SfcI CTRYAG 3 cut(s) 530, 1658, 2491
SinI GGWCC 6 cut(s) 779, 1267, 1387, 1457, 1735, 1887
SmiI ATTTAAAT 1 cut(s) 2340
SmiMI CAYNNNNRTG 2 cut(s) 579, 2298
SmlI CTYRAG 2 cut(s) 1220, 1755
SmoI CTYRAG 2 cut(s) 1220, 1755
SseBI AGGCCT 1 cut(s) 2484
SsiI CCGC 9 cut(s) 11, 454, 1484, 1558, 1695, 1978, 2227, 2297, 2536
SspI AATATT 4 cut(s) 443, 815, 1087, 1534
SspMI CTAG 2 cut(s) 2091, 2153
SstI GAGCTC 1 cut(s) 351
StuI AGGCCT 1 cut(s) 2484
StyD4I CCNGG 4 cut(s) 775, 903, 1603, 2034
StyI CCWWGG 4 cut(s) 34, 119, 2061, 2456
SwaI ATTTAAAT 1 cut(s) 2340
TaaI ACNGT 6 cut(s) 680, 1070, 1276, 1362, 1526, 1971
TaiI ACGT 2 cut(s) 1885, 2352
TaqI TCGA 2 cut(s) 1347, 2265
TaqII GACCGA 2 cut(s) 1201, 1904
TauI GCSGC 1 cut(s) 1981
TfiI GAWTC 2 cut(s) 379, 1208
TscAI CASTG 4 cut(s) 192, 685, 1662, 1976
TseFI GTSAC 3 cut(s) 152, 1931, 2302
TseI GCWGC 4 cut(s) 746, 2229, 2383, 2506
Tsp45I GTSAC 3 cut(s) 152, 1931, 2302
TspDTI ATGAA 9 cut(s) 136, 369, 849, 1116, 1184, 1274, 1926, 1928, 2201
TspGWI ACGGA 2 cut(s) 1259, 2224
TspRI CASTG 4 cut(s) 192, 685, 1662, 1976
Van91I CCANNNNNTGG 2 cut(s) 1632, 1839
VpaK11BI GGWCC 6 cut(s) 779, 1267, 1387, 1457, 1735, 1887
VspI ATTAAT 1 cut(s) 651
XapI RAATTY 8 cut(s) 622, 798, 921, 1074, 1261, 1996, 2313, 2512
XceI RCATGY 4 cut(s) 578, 1416, 1432, 2443
XmiI GTMKAC 2 cut(s) 526, 2242
XmnI GAANNNNTTC 1 cut(s) 626
XspI CTAG 2 cut(s) 2091, 2153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.