FvH4_2g04611

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000194
Physical Location & Seq
Forward (+)
3535508 .. 3536107
600 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04611.t1

Sequence Viewer

Length: 600 bp
ATGGGTAAAGCAAAAGCAGATGGTGGTTTGGGGTTCAGATGCGTAACTAATTTTAATGTGGCTCTATTGGCAAAACAGTTCTGGAGGATCATTACCAATCCCGATGCTTTCTGGGCACAAGTTATAAAAGCGAGATATTTCCCTCACCTGGATGGGTTGAATGCTGGAAAGGGCTCCCGAACCTCATGGGCGTGGAGCAGCTTATTGTATGGTCGGGATCTCATTTTGCTTGGGTCACATTGGCAGATTGGTAACGGTGCTAAGGTTGGAATTTGGGTGGACAAATGGTTTCCATTAGTCGAGAACAAATTCCTACATCCCACTCTTCCTGTCCCTAGTAGCTGTCCGCAAATCGTCTCGAAGCTAATCGATCGAGATACAAATTTCTGGAACTTGTCCCCTATACGGCAGTATCTAAGCCCTCAAGAAGCTTCTGCAATAGAAGCAATCCTAGTGGGTGACATGAACACAGAGGACAGACTGGTTTGGCCATGGGAGCGTTCGGGTTCTTACTCGGTGAAGTCGGGGTATCACCTGCAACACTCCCAATGTTCCCAAAAACAAGATTTGAAAGCAAGTACCTCACACCACATCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

200

Amino Acids

22.45

Weight (kDa)

9.32

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 125
AarI CACCTGC 1 cut(s) 543
Acc36I ACCTGC 1 cut(s) 543
AciI CCGC 1 cut(s) 347
AclWI GGATC 2 cut(s) 95, 225
AcoI YGGCCR 1 cut(s) 488
AcsI RAATTY 3 cut(s) 270, 308, 382
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 2 cut(s) 148, 405
AgsI TTSAA 2 cut(s) 160, 571
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 4 cut(s) 201, 342, 364, 431
AluI AGCT 4 cut(s) 201, 342, 364, 431
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 2 cut(s) 95, 225
AoxI GGCC 1 cut(s) 488
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 3 cut(s) 270, 308, 382
Asp700I GAANNNNTTC 1 cut(s) 308
AsuHPI GGTGA 4 cut(s) 137, 470, 524, 529
BaeGI GKGCMC 1 cut(s) 118
BaeI ACNNNNGTAYC 2 cut(s) 395, 428
BalI TGGCCA 1 cut(s) 490
BanII GRGCYC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 210
BccI CCATC 2 cut(s) 14, 146
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 2 cut(s) 336, 452
BfuAI ACCTGC 1 cut(s) 543
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 29, 94
BpmI CTGGAG 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 408
Bsa29I ATCGAT 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 491
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 405
Bse1I ACTGG 1 cut(s) 486
BseBI CCWGG 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 3 cut(s) 157, 316, 591
BseLI CCNNNNNNNGG 2 cut(s) 148, 405
BseNI ACTGG 1 cut(s) 486
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 1 cut(s) 490
BshVI ATCGAT 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 373
BslFI GGGAC 2 cut(s) 317, 382
BslI CCNNNNNNNGG 2 cut(s) 148, 405
BsmAI GTCTC 1 cut(s) 361
BsmBI CGTCTC 1 cut(s) 361
BsmFI GGGAC 2 cut(s) 317, 382
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 1 cut(s) 490
Bsp1286I GDGCHC 2 cut(s) 118, 176
Bsp143I GATC 3 cut(s) 87, 217, 370
Bsp19I CCATGG 1 cut(s) 491
BspACI CCGC 1 cut(s) 347
BspANI GGCC 1 cut(s) 490
BspDI ATCGAT 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 543
BspPI GGATC 2 cut(s) 95, 225
BsrI ACTGG 1 cut(s) 486
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 3 cut(s) 87, 217, 370
BssT1I CCWWGG 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 78, 257
Bst6I CTCTTC 1 cut(s) 330
BstDEI CTNAG 2 cut(s) 261, 416
BstDSI CCRYGG 1 cut(s) 491
BstF5I GGATG 3 cut(s) 157, 316, 591
BstKTI GATC 3 cut(s) 90, 220, 373
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 3 cut(s) 87, 217, 370
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 4 cut(s) 68, 113, 443, 496
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 369
BsuRI GGCC 1 cut(s) 490
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 491
BtsCI GGATG 3 cut(s) 157, 316, 591
BveI ACCTGC 1 cut(s) 543
ClaI ATCGAT 1 cut(s) 369
Csp6I GTAC 1 cut(s) 579
CspCI CAANNNNNGTGG 2 cut(s) 435, 470
CviAII CATG 3 cut(s) 186, 463, 492
CviJI RGCY 8 cut(s) 62, 174, 201, 342, 364, 420, 431, 490
CviKI_1 RGCY 8 cut(s) 62, 174, 201, 342, 364, 420, 431, 490
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 2 cut(s) 261, 416
DpnI GATC 3 cut(s) 89, 219, 372
DpnII GATC 3 cut(s) 87, 217, 370
EaeI YGGCCR 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 491
EcoT38I GRGCYC 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 491
Esp3I CGTCTC 1 cut(s) 361
FaeI CATG 3 cut(s) 189, 466, 495
FaiI YATR 6 cut(s) 125, 187, 210, 404, 464, 493
FaqI GGGAC 2 cut(s) 317, 382
FatI CATG 3 cut(s) 185, 462, 491
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 3 cut(s) 164, 303, 578
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 2 cut(s) 336, 452
GluI GCNGC 1 cut(s) 199
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 1 cut(s) 490
Hin1II CATG 3 cut(s) 189, 466, 495
HindIII AAGCTT 1 cut(s) 429
HphI GGTGA 4 cut(s) 137, 470, 524, 529
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 9 cut(s) 82, 101, 177, 215, 301, 358, 374, 388, 425
Hpy8I GTNNAC 1 cut(s) 280
HpyCH4III ACNGT 2 cut(s) 78, 257
HpyCH4V TGCA 2 cut(s) 437, 538
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 113, 443, 496
HpyF3I CTNAG 2 cut(s) 261, 416
Hsp92II CATG 3 cut(s) 189, 466, 495
Kzo9I GATC 3 cut(s) 87, 217, 370
LmnI GCTCC 3 cut(s) 179, 195, 496
LpnPI CCDG 9 cut(s) 67, 97, 134, 150, 161, 342, 373, 467, 548
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 2 cut(s) 29, 94
MaeI CTAG 2 cut(s) 336, 452
MaeIII GTNAC 4 cut(s) 43, 234, 251, 458
MalI GATC 3 cut(s) 89, 219, 372
MboI GATC 3 cut(s) 87, 217, 370
MboII GAAGA 1 cut(s) 317
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 118, 176
MlsI TGGCCA 1 cut(s) 490
MluCI AATT 4 cut(s) 49, 270, 308, 382
MluNI TGGCCA 1 cut(s) 490
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 6 cut(s) 78, 153, 193, 432, 466, 592
Mox20I TGGCCA 1 cut(s) 490
MroXI GAANNNNTTC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 490
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 2 cut(s) 150, 190
Msp20I TGGCCA 1 cut(s) 490
MspR9I CCNGG 1 cut(s) 149
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 68, 113, 443, 496
NcoI CCATGG 1 cut(s) 491
NdeII GATC 3 cut(s) 87, 217, 370
NlaIII CATG 3 cut(s) 189, 466, 495
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 2 cut(s) 234, 458
PaqCI CACCTGC 1 cut(s) 543
PctI GAATGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 200
Ple19I CGATCG 1 cut(s) 373
PsiI TTATAA 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 217
PvuI CGATCG 1 cut(s) 373
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
RseI CAYNNNNRTG 2 cut(s) 150, 190
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 3 cut(s) 87, 217, 370
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 2 cut(s) 118, 176
SetI ASST 9 cut(s) 150, 185, 203, 267, 344, 366, 433, 537, 584
SfaNI GCATC 2 cut(s) 29, 94
SmiMI CAYNNNNRTG 2 cut(s) 150, 190
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 4 cut(s) 49, 270, 308, 382
SsiI CCGC 1 cut(s) 347
SspMI CTAG 2 cut(s) 336, 452
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 2 cut(s) 78, 257
TaqI TCGA 4 cut(s) 300, 359, 369, 373
TasI AATT 4 cut(s) 49, 270, 308, 382
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 2 cut(s) 234, 458
TseI GCWGC 1 cut(s) 198
Tsp45I GTSAC 2 cut(s) 234, 458
TspDTI ATGAA 1 cut(s) 479
XapI RAATTY 3 cut(s) 270, 308, 382
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 2 cut(s) 336, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.