Rorug06G0111500

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000194
Physical Location & Seq
Reverse (-)
15109169 .. 15109702
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0111500.1

Sequence Viewer

Length: 534 bp
ATGGAACCACAAACCCAGCAACCAACTGAGGATGGAGGAAGCAACAGAGCAGCCGGGAGTAATGCTAACATGCTTTGCAGGCGGAGCAATACCAGGTGGACTCCCACTCCAGATCAGATAAGAATCCTCAATGATCTTTTCTATAGCAAGGGAGTTAGGTCCCCAACCGTAGAGCAGGTTCAGCGGATCTGTTTCCAGCTAAGACGGTACGGACAGATCGAGGCCAAGAATGTCTTTTATTGGTTCCAGAACCACAAGGCTCAGGATAAACGGAAGAAGAAGATCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGTTTGTTGGTGGATCTATTGATCTCAATTTTGGGTCAGGGGTCGGCTGCAGTGTTGACCCATATTTCTCCTCATCCTTCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCACAGTGAAGACATCTTGGGCAACATGAAGACTACTTCCGAGGAAGGTAGCGGTTATGGTGATTACTCCGGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

177

Amino Acids

19.95

Weight (kDa)

6.42

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 1.3e-11 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AciI CCGC 3 cut(s) 82, 184, 507
AclWI GGATC 2 cut(s) 194, 340
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 1 cut(s) 434
AjnI CCWGG 2 cut(s) 92, 423
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
AlwI GGATC 2 cut(s) 194, 340
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 50, 366
Asp700I GAANNNNTTC 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 413, 527
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 306
BbsI GAAGAC 2 cut(s) 471, 491
BbvI GCAGC 2 cut(s) 62, 353
BccI CCATC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 94, 425
BcnI CCSGG 1 cut(s) 55
BfmI CTRYAG 2 cut(s) 142, 367
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 2 cut(s) 51, 367
BlsI GCNGC 2 cut(s) 52, 368
Bme1390I CCNGG 3 cut(s) 55, 94, 425
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 3 cut(s) 6, 161, 245
BmrFI CCNGG 3 cut(s) 55, 94, 425
BpiI GAAGAC 2 cut(s) 471, 491
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 495
BsaWI WCCGGW 1 cut(s) 524
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 2 cut(s) 94, 425
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 3 cut(s) 37, 298, 392
BseJI GATNNNNATC 1 cut(s) 122
BseMII CTCAG 2 cut(s) 18, 275
BseRI GAGGAG 2 cut(s) 379, 426
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 2 cut(s) 62, 353
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 54, 525
BslFI GGGAC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 9 cut(s) 112, 133, 186, 216, 282, 314, 332, 340, 418
BspACI CCGC 3 cut(s) 82, 184, 507
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 2 cut(s) 19, 274
BspLI GGNNCC 3 cut(s) 6, 161, 245
BspMAI CTGCAG 1 cut(s) 371
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 2 cut(s) 194, 340
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 9 cut(s) 112, 133, 186, 216, 282, 314, 332, 340, 418
Bst2UI CCWGG 2 cut(s) 94, 425
Bst4CI ACNGT 3 cut(s) 169, 207, 461
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 27, 200, 261
BstF5I GGATG 3 cut(s) 37, 298, 392
BstKTI GATC 9 cut(s) 115, 136, 189, 219, 285, 317, 335, 343, 421
BstMBI GATC 9 cut(s) 112, 133, 186, 216, 282, 314, 332, 340, 418
BstMWI GCNNNNNNNGC 3 cut(s) 79, 84, 181
BstNI CCWGG 2 cut(s) 94, 425
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 53, 92, 423
BstSFI CTRYAG 2 cut(s) 142, 367
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 62, 353
BstV2I GAAGAC 2 cut(s) 471, 491
BstX2I RGATCY 2 cut(s) 186, 332
BstYI RGATCY 2 cut(s) 186, 332
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 3 cut(s) 37, 298, 392
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 2 cut(s) 376, 466
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 1 cut(s) 208
CviAII CATG 6 cut(s) 70, 299, 307, 400, 454, 481
CviJI RGCY 5 cut(s) 53, 199, 224, 260, 366
CviKI_1 RGCY 5 cut(s) 53, 199, 224, 260, 366
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 3 cut(s) 27, 200, 261
DpnI GATC 9 cut(s) 114, 135, 188, 218, 284, 316, 334, 342, 420
DpnII GATC 9 cut(s) 112, 133, 186, 216, 282, 314, 332, 340, 418
EciI GGCGGA 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 2 cut(s) 92, 423
FaeI CATG 6 cut(s) 73, 302, 310, 403, 457, 484
FaiI YATR 9 cut(s) 71, 144, 300, 308, 382, 401, 455, 482, 513
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 145
FatI CATG 6 cut(s) 69, 298, 306, 399, 453, 480
Fnu4HI GCNGC 2 cut(s) 51, 367
FokI GGATG 3 cut(s) 44, 305, 379
Fsp4HI GCNGC 2 cut(s) 51, 367
GluI GCNGC 2 cut(s) 51, 367
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 224
HapII CCGG 2 cut(s) 54, 525
Hin1II CATG 6 cut(s) 73, 302, 310, 403, 457, 484
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 2 cut(s) 54, 525
HphI GGTGA 2 cut(s) 413, 527
Hpy166II GTNNAC 2 cut(s) 99, 376
Hpy188I TCNGA 3 cut(s) 117, 292, 496
Hpy188III TCNNGA 3 cut(s) 110, 247, 263
Hpy8I GTNNAC 2 cut(s) 99, 376
HpyAV CCTTC 3 cut(s) 406, 449, 494
HpyCH4III ACNGT 3 cut(s) 169, 207, 461
HpyCH4V TGCA 4 cut(s) 78, 310, 369, 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 84, 181
HpyF3I CTNAG 3 cut(s) 27, 200, 261
Hsp92II CATG 6 cut(s) 73, 302, 310, 403, 457, 484
Kzo9I GATC 9 cut(s) 112, 133, 186, 216, 282, 314, 332, 340, 418
LmnI GCTCC 1 cut(s) 84
Lsp1109I GCAGC 2 cut(s) 62, 353
MabI ACCWGGT 1 cut(s) 92
MalI GATC 9 cut(s) 114, 135, 188, 218, 284, 316, 334, 342, 420
MboI GATC 9 cut(s) 112, 133, 186, 216, 282, 314, 332, 340, 418
MboII GAAGA 6 cut(s) 286, 289, 292, 428, 476, 496
MflI RGATCY 2 cut(s) 186, 332
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 7 cut(s) 22, 29, 137, 214, 400, 404, 490
MroXI GAANNNNTTC 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 2 cut(s) 54, 525
MspR9I CCNGG 3 cut(s) 55, 94, 425
MvaI CCWGG 2 cut(s) 94, 425
MwoI GCNNNNNNNGC 3 cut(s) 79, 84, 181
NciI CCSGG 1 cut(s) 55
NdeII GATC 9 cut(s) 112, 133, 186, 216, 282, 314, 332, 340, 418
NlaIII CATG 6 cut(s) 73, 302, 310, 403, 457, 484
NlaIV GGNNCC 3 cut(s) 6, 161, 245
NspI RCATGY 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 2 cut(s) 52, 368
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 92, 423
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 92, 423
PspN4I GGNNCC 3 cut(s) 6, 161, 245
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PstI CTGCAG 1 cut(s) 371
PsuI RGATCY 2 cut(s) 186, 332
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SatI GCNGC 2 cut(s) 51, 367
Sau3AI GATC 9 cut(s) 112, 133, 186, 216, 282, 314, 332, 340, 418
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 3 cut(s) 55, 94, 425
SduI GDGCHC 1 cut(s) 306
SetI ASST 5 cut(s) 98, 161, 180, 201, 505
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 2 cut(s) 142, 367
SinI GGWCC 1 cut(s) 159
Sse9I AATT 1 cut(s) 346
SsiI CCGC 3 cut(s) 82, 184, 507
StyD4I CCNGG 3 cut(s) 53, 92, 423
TaaI ACNGT 3 cut(s) 169, 207, 461
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 346
TfiI GAWTC 1 cut(s) 123
TscAI CASTG 2 cut(s) 376, 466
TseI GCWGC 2 cut(s) 50, 366
TspDTI ATGAA 3 cut(s) 287, 388, 497
TspGWI ACGGA 2 cut(s) 225, 286
TspRI CASTG 2 cut(s) 376, 466
VpaK11BI GGWCC 1 cut(s) 159
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.