FvH4_1g29471

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000194
Physical Location & Seq
Reverse (-)
22607834 .. 22610060
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29471.t1

Sequence Viewer

Length: 822 bp
ATGGGCACTCTTTCTACTGCAAAACGGGAAGTTCTAATTAAATCGGTGGCATTGGCTAAAAAAGAGGAAACCAAGATCCATTGGAAGAGTTGGGAATACTTAGGGCTGCCAAAGAAGGAAGGGGGTTTGCGGTTCAGAAATCTTTATGACTTCAACACTGCTTTGCTAGCCAAACAAGTGTGGAGGCTCCACAGTGAACTAAATTCTTTTTGGGCAAAGATGATTAAAGGGATCTACTATCCACACACAGATGTTCTTCAGGCAAGAAAAGGGTTCAGGACATCGTGGGCATGGAGCAGTTTATTGGAAGGTAAAGCTCTAATTGAAGAAGGTGCAAGATGGTTAGTAGGCAATAGGAACTCCATTGACATATGGAGGGATAAATGGATTTTAAAATCTGAAATGGGCTTCATTCGCCCTACTCCCATTGTTGGACTAGTTCATGAGTGTGATATGAAAGCTGTAAGAAAGCAACTATTCGGCTACATTGAGGTTGAGGATAGATTAATCTGGCCTCAAACAAAAGGTGGCTCTTACACGGTCAAATCCGGGATTAATGTTCAAGAAATCACATCAATTGATCAACGGATTGAGAAGATCGTAAAGCTTATACATAGAGCTCCTCATCTGTGCAGACCGATCTCTTGGTCTTGGATACGCAGAAAAGCGAACTGCACAGCTCACCATGTTGTGTCGCTAAGTGTGAGGAAGACATGCCCGGATGTCTGGATTGACAAACCGCCATTCGACCTAGTTCATATTCTCTCTCGCGACGGATTGCCGTGTCCTCCGCCGGAATGTGTTATTGATTTGAACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

274

Amino Acids

31.62

Weight (kDa)

9.57

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 771
AciI CCGC 3 cut(s) 130, 740, 791
AclWI GGATC 2 cut(s) 70, 239
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 4 cut(s) 154, 326, 563, 814
AhlI ACTAGT 1 cut(s) 436
AluBI AGCT 5 cut(s) 317, 461, 607, 620, 680
AluI AGCT 5 cut(s) 317, 461, 607, 620, 680
Alw21I GWGCWC 1 cut(s) 622
AlwI GGATC 2 cut(s) 70, 239
AoxI GGCC 1 cut(s) 512
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 202
AseI ATTAAT 2 cut(s) 506, 555
AsuC2I CCSGG 2 cut(s) 550, 719
AsuHPI GGTGA 1 cut(s) 674
AsuNHI GCTAGC 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 622
BbsI GAAGAC 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 333
BceAI ACGGC 1 cut(s) 766
BciVI GTATCC 1 cut(s) 648
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 2 cut(s) 550, 719
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 3 cut(s) 167, 437, 752
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 2 cut(s) 550, 719
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 2 cut(s) 550, 719
BmtI GCTAGC 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 716
BpuMI CCSGG 2 cut(s) 550, 719
Bsc4I CCNNNNNNNGG 1 cut(s) 431
BseGI GGATG 1 cut(s) 727
BseLI CCNNNNNNNGG 1 cut(s) 431
BseRI GAGGAG 1 cut(s) 612
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 93
BsgI GTGCAG 2 cut(s) 652, 658
Bsh1236I CGCG 1 cut(s) 771
BshFI GGCC 1 cut(s) 514
BsiHKAI GWGCWC 1 cut(s) 622
BsiSI CCGG 3 cut(s) 549, 719, 794
BslI CCNNNNNNNGG 1 cut(s) 431
BsnI GGCC 1 cut(s) 514
Bsp1286I GDGCHC 2 cut(s) 8, 622
Bsp143I GATC 5 cut(s) 75, 231, 580, 597, 639
Bsp68I TCGCGA 1 cut(s) 771
BspACI CCGC 3 cut(s) 130, 740, 791
BspANI GGCC 1 cut(s) 514
BspFNI CGCG 1 cut(s) 771
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 188
BspOI GCTAGC 1 cut(s) 170
BspPI GGATC 2 cut(s) 70, 239
BssMI GATC 5 cut(s) 75, 231, 580, 597, 639
Bst4CI ACNGT 2 cut(s) 194, 541
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 100, 698
BstF5I GGATG 1 cut(s) 727
BstFNI CGCG 1 cut(s) 771
BstKTI GATC 5 cut(s) 78, 234, 583, 600, 642
BstMBI GATC 5 cut(s) 75, 231, 580, 597, 639
BstMWI GCNNNNNNNGC 2 cut(s) 167, 414
BstNSI RCATGY 1 cut(s) 717
BstSCI CCNGG 2 cut(s) 548, 717
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 771
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 716
BstX2I RGATCY 2 cut(s) 75, 231
BstYI RGATCY 2 cut(s) 75, 231
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 1 cut(s) 514
BtsCI GGATG 1 cut(s) 727
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 156, 199
BtuMI TCGCGA 1 cut(s) 771
Cac8I GCNNGC 1 cut(s) 168
CciI TCATGA 1 cut(s) 442
CviAII CATG 4 cut(s) 291, 443, 686, 714
DdeI CTNAG 2 cut(s) 100, 698
DpnI GATC 5 cut(s) 77, 233, 582, 599, 641
DpnII GATC 5 cut(s) 75, 231, 580, 597, 639
DraI TTTAAA 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 780
Ecl136II GAGCTC 1 cut(s) 620
Eco24I GRGCYC 1 cut(s) 622
Eco53kI GAGCTC 1 cut(s) 620
Eco57I CTGAAG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 620
EcoT38I GRGCYC 1 cut(s) 622
FaeI CATG 4 cut(s) 294, 446, 689, 717
FatI CATG 4 cut(s) 290, 442, 685, 713
FauNDI CATATG 1 cut(s) 371
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 3 cut(s) 167, 437, 752
GluI GCNGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 514
HapII CCGG 3 cut(s) 549, 719, 794
Hin1II CATG 4 cut(s) 294, 446, 689, 717
HindIII AAGCTT 1 cut(s) 605
HpaII CCGG 3 cut(s) 549, 719, 794
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 2 cut(s) 137, 400
Hpy188III TCNNGA 5 cut(s) 277, 443, 563, 727, 770
Hpy8I GTNNAC 1 cut(s) 197
Hpy99I CGWCG 1 cut(s) 776
HpyAV CCTTC 4 cut(s) 109, 113, 302, 323
HpyCH4III ACNGT 2 cut(s) 194, 541
HpyCH4V TGCA 4 cut(s) 20, 335, 633, 675
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 414
HpyF3I CTNAG 2 cut(s) 100, 698
Hsp92II CATG 4 cut(s) 294, 446, 689, 717
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 5 cut(s) 75, 231, 580, 597, 639
LmnI GCTCC 3 cut(s) 192, 294, 625
LpnPI CCDG 7 cut(s) 245, 262, 496, 562, 712, 732, 807
Lsp1109I GCAGC 1 cut(s) 93
MaeI CTAG 3 cut(s) 167, 437, 752
MalI GATC 5 cut(s) 77, 233, 582, 599, 641
MboI GATC 5 cut(s) 75, 231, 580, 597, 639
MboII GAAGA 5 cut(s) 97, 248, 338, 607, 721
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 2 cut(s) 75, 231
MhlI GDGCHC 2 cut(s) 8, 622
MluCI AATT 4 cut(s) 36, 202, 321, 576
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 9 cut(s) 58, 177, 369, 484, 490, 525, 633, 699, 798
MseI TTAA 5 cut(s) 39, 225, 392, 506, 555
MslI CAYNNNNRTG 2 cut(s) 249, 447
MspI CCGG 3 cut(s) 549, 719, 794
MspR9I CCNGG 2 cut(s) 550, 719
MunI CAATTG 1 cut(s) 576
MvnI CGCG 1 cut(s) 771
MwoI GCNNNNNNNGC 2 cut(s) 167, 414
NciI CCSGG 2 cut(s) 550, 719
NdeI CATATG 1 cut(s) 371
NdeII GATC 5 cut(s) 75, 231, 580, 597, 639
NheI GCTAGC 1 cut(s) 166
NlaIII CATG 4 cut(s) 294, 446, 689, 717
NlaIV GGNNCC 1 cut(s) 188
NruI TCGCGA 1 cut(s) 771
NspI RCATGY 1 cut(s) 717
PagI TCATGA 1 cut(s) 442
PfoI TCCNGGA 1 cut(s) 548
PkrI GCNGC 1 cut(s) 108
PshBI ATTAAT 2 cut(s) 506, 555
Psp124BI GAGCTC 1 cut(s) 622
PspN4I GGNNCC 1 cut(s) 188
PsuI RGATCY 2 cut(s) 75, 231
RruI TCGCGA 1 cut(s) 771
RseI CAYNNNNRTG 2 cut(s) 249, 447
SacI GAGCTC 1 cut(s) 622
SaqAI TTAA 5 cut(s) 39, 225, 392, 506, 555
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 5 cut(s) 75, 231, 580, 597, 639
ScrFI CCNGG 2 cut(s) 550, 719
SduI GDGCHC 2 cut(s) 8, 622
SmiMI CAYNNNNRTG 2 cut(s) 249, 447
SpeI ACTAGT 1 cut(s) 436
Sse9I AATT 4 cut(s) 36, 202, 321, 576
SsiI CCGC 3 cut(s) 130, 740, 791
SspMI CTAG 3 cut(s) 167, 437, 752
SstI GAGCTC 1 cut(s) 622
StyD4I CCNGG 2 cut(s) 548, 717
TaaI ACNGT 2 cut(s) 194, 541
TaqI TCGA 1 cut(s) 747
TaqII GACCGA 1 cut(s) 652
TasI AATT 4 cut(s) 36, 202, 321, 576
Tru1I TTAA 5 cut(s) 39, 225, 392, 506, 555
Tru9I TTAA 5 cut(s) 39, 225, 392, 506, 555
TscAI CASTG 2 cut(s) 163, 199
TseI GCWGC 1 cut(s) 106
TspDTI ATGAA 4 cut(s) 400, 431, 470, 746
TspGWI ACGGA 2 cut(s) 601, 789
TspRI CASTG 2 cut(s) 163, 199
VspI ATTAAT 2 cut(s) 506, 555
XapI RAATTY 1 cut(s) 202
XceI RCATGY 1 cut(s) 717
XspI CTAG 3 cut(s) 167, 437, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.