AT4G29090

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000194
Physical Location & Seq
Forward (+)
14333528 .. 14335255
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29090.1

Sequence Viewer

Length: 1728 bp
ATGGCTCTACCAACTTATACAATGGCATGCTTCCTTCTGCCCAAAACAGTATGTAAGCAAATAATCTCTGTTCTAGCTGATTTCTGGTGGAGAAATAAACAAGAGGCGAAAGGTATGCATTGGAAAGCGTGGGATCATTTGAGTTGTTATAAAGCGGAAGGAGGCATTGGATTTAAAGATATAGAGGCTTTTAATTTAGCCTTGCTTGGAAAGCAAATGTGGCGGATGCTTTCTCGACCAGAATCGTTAATGGCAAAGGTATTCAAGAGTAGGTACTTTCATAAATCTGACCCTTTGAATGCACCATTAGGATCAAGGCCATCTTTTGTTTGGAAAAGCATTCATGCATCTCAAGAAATTCTAAGGCAGGGTGCCAGAGCTGTTGTCGGGAATGGAGAGGATATTATCATTTGGAGGCATAAATGGCTAGATTCCAAACCAGCAAGTGCAGCCTTACGAATGCAGAGAGTTCCCCCTCAAGAATATGCTTCGGTATCCTCTATCTTAAAGGTGTCAGATTTAATAGATGAGAGTGGTAGAGAGTGGAGGAAAGACGTGATTGAGATGTTATTCCCGGAGGTGGAACGCAAATTAATAGGGGAACTTCGGCCAGGGGGAAGAAGAATTTTGGATAGTTACACTTGGGACTACACAAGCTCTGGAGACTACACGGTGAAATCTGGATATTGGGTGTTAACTCAAATCATCAATAAGAGGAGTAGTCCACAAGAAGTATCTGAACCGAGTCTAAACCCCATTTACCAAAAAATTTGGAAGAGCCAAACAAGCCCGAAGATACAACACTTTCTGTGGAAATGCTTAAGTAATTCCCTCCCTGTGGCTGGTGCCTTAGCGTATCGACATCTATCTAAGGAGTCAGCCTGCATAAGATGTCCATCATGTAAAGAAACGGTGAATCACTTGTTATTTAAGTGTACTTTTGCTAGATTAACGTGGGCTATCTCTTCTATACCAATTCCACTGGGAGGGGAATGGGCTGATTCCATTTATGTCAATCTGTATTGGGTTTTTAATCTGGGAAATGGAAATCCTCAATGGGAGAAGGCTTCTCAACTTGTACCTTGGTTACTGTGGCGCCTGTGGAAGAACAGAAATGAACTAGTCTTTAGAGGAAGAGAGTTTAATGCTCAAGAGGTATTGAGAAGAGCAGAAGACGACCTTGAGGAATGGAGAATTAGAACAGAGGCTGAAAGCTGTGGCACAAAGCCTCAAGTGAACAGAAGTTCTTGTGGAAGATGGAGGCCACCGCCACATCAATGGGTTAAATGCAACACGGATGCGACTTGGAATCGGGATAATGAGAGGTGTGGTATAGGATGGGTCCTCCGGAATGAGAAGGGAGAAGTGAAATGGATGGGAGCTAGAGCTTTACCGAAACTGAAATCTGTATTGGAAGCGGAACTAGAAGCGATGCGATGGGCAGTCCTTTCTTTAAGTCGGTTTCAATACAATTATGTCATCTTTGAATCAGACTCACAGGTTTTGATAGAGATCTTGAACAATGACGAAATTTGGCCAAGCCTTAAGCCAACAATACAAGATCTGCAGAGGTTGCTCTCCCAGTTTACAGAGGTCAAGTTTGTGTTCATACCAAGAGAGGGAAACACATTGGCAGAAAGAGTAGCAAGGGAATCTCTTTCTTTTTTGAATTATGATCCTAAGCTTTATTCTATTGTGCCTAGTTGGGCTAGAAGTAGTATGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

575

Amino Acids

66.71

Weight (kDa)

9.26

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 223 - 319 4.3e-16 zinc-binding in reverse transcriptase
RVT_3 PF13456 431 - 551 3.1e-25 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AccB1I GGYRCC 3 cut(s) 371, 845, 1095
AccIII TCCGGA 1 cut(s) 1347
AciI CCGC 4 cut(s) 155, 223, 1268, 1418
AclWI GGATC 3 cut(s) 141, 319, 1670
AcoI YGGCCR 2 cut(s) 608, 1535
AcsI RAATTY 4 cut(s) 357, 624, 768, 1530
AcyI GRCGYC 1 cut(s) 1096
AfaI GTAC 3 cut(s) 275, 937, 1080
AfiI CCNNNNNNNGG 5 cut(s) 580, 838, 842, 986, 1619
AflII CTTAAG 2 cut(s) 820, 1544
AgsI TTSAA 6 cut(s) 265, 298, 1466, 1487, 1519, 1669
AhlI ACTAGT 1 cut(s) 1120
AjiI CACGTC 1 cut(s) 556
AjnI CCWGG 1 cut(s) 610
AjuI GAANNNNNNNTTGG 4 cut(s) 150, 182, 1394, 1426
AluBI AGCT 7 cut(s) 77, 380, 657, 1215, 1382, 1388, 1684
AluI AGCT 7 cut(s) 77, 380, 657, 1215, 1382, 1388, 1684
Alw26I GTCTC 1 cut(s) 657
AlwI GGATC 3 cut(s) 141, 319, 1670
AlwNI CAGNNNCTG 1 cut(s) 1208
Aor13HI TCCGGA 1 cut(s) 1347
AoxI GGCC 4 cut(s) 317, 608, 1262, 1535
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 4 cut(s) 357, 624, 768, 1530
AseI ATTAAT 1 cut(s) 593
AspLEI GCGC 1 cut(s) 1098
AspS9I GGNCC 1 cut(s) 1342
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 2 cut(s) 685, 925
AvaII GGWCC 1 cut(s) 1342
BalI TGGCCA 1 cut(s) 1537
BanI GGYRCC 3 cut(s) 371, 845, 1095
BbsI GAAGAC 1 cut(s) 1179
BbvI GCAGC 1 cut(s) 461
BccI CCATC 6 cut(s) 328, 904, 1251, 1332, 1369, 1431
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 1 cut(s) 505
BcnI CCSGG 1 cut(s) 575
BcoDI GTCTC 1 cut(s) 657
BcuI ACTAGT 1 cut(s) 1120
BfaI CTAG 8 cut(s) 74, 428, 945, 1121, 1383, 1424, 1701, 1710
BfmI CTRYAG 1 cut(s) 1565
BfoI RGCGCY 1 cut(s) 1099
BfrI CTTAAG 2 cut(s) 820, 1544
BfuI GTATCC 1 cut(s) 505
BglII AGATCT 2 cut(s) 1512, 1561
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 2 cut(s) 575, 612
Bme18I GGWCC 1 cut(s) 1342
BmgBI CACGTC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 1342
BmiI GGNNCC 4 cut(s) 373, 847, 1097, 1343
BmrFI CCNGG 2 cut(s) 575, 612
BmrI ACTGGG 2 cut(s) 992, 1576
BmsI GCATC 4 cut(s) 216, 356, 1288, 1422
BmuI ACTGGG 2 cut(s) 992, 1576
BpiI GAAGAC 1 cut(s) 1179
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 2 cut(s) 850, 1680
BpuEI CTTGAG 5 cut(s) 336, 462, 1134, 1202, 1215
BpuMI CCSGG 1 cut(s) 575
BsaBI GATNNNNATC 2 cut(s) 895, 1511
BsaHI GRCGYC 1 cut(s) 1096
BsaJI CCNNGG 2 cut(s) 611, 1082
BsaWI WCCGGW 1 cut(s) 1347
Bsc4I CCNNNNNNNGG 5 cut(s) 580, 838, 842, 986, 1619
Bse1I ACTGG 2 cut(s) 987, 1582
Bse8I GATNNNNATC 2 cut(s) 895, 1511
BseAI TCCGGA 1 cut(s) 1347
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 2 cut(s) 611, 1082
BseGI GGATG 4 cut(s) 231, 1303, 1343, 1380
BseJI GATNNNNATC 2 cut(s) 895, 1511
BseLI CCNNNNNNNGG 5 cut(s) 580, 838, 842, 986, 1619
BseNI ACTGG 2 cut(s) 987, 1582
BseRI GAGGAG 1 cut(s) 730
BseXI GCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 468
BshFI GGCC 4 cut(s) 319, 610, 1264, 1537
BshNI GGYRCC 3 cut(s) 371, 845, 1095
BsiSI CCGG 2 cut(s) 575, 1348
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 5 cut(s) 580, 838, 842, 986, 1619
BsmAI GTCTC 1 cut(s) 657
BsmFI GGGAC 1 cut(s) 659
BsmI GAATGC 3 cut(s) 304, 339, 465
BsnI GGCC 4 cut(s) 319, 610, 1264, 1537
Bsp13I TCCGGA 1 cut(s) 1347
Bsp143I GATC 5 cut(s) 133, 311, 1512, 1561, 1675
BspACI CCGC 4 cut(s) 155, 223, 1268, 1418
BspANI GGCC 4 cut(s) 319, 610, 1264, 1537
BspEI TCCGGA 1 cut(s) 1347
BspLI GGNNCC 4 cut(s) 373, 847, 1097, 1343
BspMAI CTGCAG 1 cut(s) 1569
BspPI GGATC 3 cut(s) 141, 319, 1670
BspQI GCTCTTC 2 cut(s) 770, 1159
BspT107I GGYRCC 3 cut(s) 371, 845, 1095
BspTI CTTAAG 2 cut(s) 820, 1544
BsrI ACTGG 2 cut(s) 987, 1582
BssECI CCNNGG 2 cut(s) 611, 1082
BssMI GATC 5 cut(s) 133, 311, 1512, 1561, 1675
BssNI GRCGYC 1 cut(s) 1096
BssT1I CCWWGG 1 cut(s) 1082
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 4 cut(s) 49, 673, 913, 1092
Bst6I CTCTTC 4 cut(s) 770, 970, 1129, 1159
BstACI GRCGYC 1 cut(s) 1096
BstAFI CTTAAG 2 cut(s) 820, 1544
BstAPI GCANNNNNTGC 1 cut(s) 1573
BstC8I GCNNGC 2 cut(s) 28, 883
BstDEI CTNAG 4 cut(s) 362, 850, 870, 1680
BstF5I GGATG 4 cut(s) 231, 1303, 1343, 1380
BstH2I RGCGCY 1 cut(s) 1099
BstHHI GCGC 1 cut(s) 1098
BstKTI GATC 5 cut(s) 136, 314, 1515, 1564, 1678
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 5 cut(s) 133, 311, 1512, 1561, 1675
BstMWI GCNNNNNNNGC 6 cut(s) 211, 220, 424, 449, 786, 1573
BstNI CCWGG 1 cut(s) 612
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 573, 610
BstSFI CTRYAG 1 cut(s) 1565
BstV1I GCAGC 1 cut(s) 461
BstV2I GAAGAC 1 cut(s) 1179
BstX2I RGATCY 2 cut(s) 1512, 1561
BstXI CCANNNNNNTGG 1 cut(s) 1278
BstYI RGATCY 2 cut(s) 1512, 1561
BsuI GTATCC 1 cut(s) 505
BsuRI GGCC 4 cut(s) 319, 610, 1264, 1537
BtgZI GCGATG 2 cut(s) 1445, 1450
BtrI CACGTC 1 cut(s) 556
BtsCI GGATG 4 cut(s) 231, 1303, 1343, 1380
BtsIMutI CAGTG 1 cut(s) 980
Cac8I GCNNGC 2 cut(s) 28, 883
CaiI CAGNNNCTG 1 cut(s) 1208
CfoI GCGC 1 cut(s) 1098
Cfr13I GGNCC 1 cut(s) 1342
Csp6I GTAC 3 cut(s) 274, 936, 1079
CviAII CATG 3 cut(s) 27, 344, 900
CviQI GTAC 3 cut(s) 274, 936, 1079
DdeI CTNAG 4 cut(s) 362, 850, 870, 1680
DinI GGCGCC 1 cut(s) 1097
DpnI GATC 5 cut(s) 135, 313, 1514, 1563, 1677
DpnII GATC 5 cut(s) 133, 311, 1512, 1561, 1675
DraI TTTAAA 1 cut(s) 175
EaeI YGGCCR 2 cut(s) 608, 1535
Eam1104I CTCTTC 4 cut(s) 770, 970, 1129, 1159
EarI CTCTTC 4 cut(s) 770, 970, 1129, 1159
EciI GGCGGA 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 1082
Eco47I GGWCC 1 cut(s) 1342
EcoO109I RGGNCCY 1 cut(s) 1342
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 1 cut(s) 1082
EcoT22I ATGCAT 2 cut(s) 120, 349
EgeI GGCGCC 1 cut(s) 1097
EheI GGCGCC 1 cut(s) 1097
ErhI CCWWGG 1 cut(s) 1082
FaeI CATG 3 cut(s) 30, 347, 903
FalI AAGNNNNNCTT 4 cut(s) 307, 339, 1164, 1196
FaqI GGGAC 1 cut(s) 659
FatI CATG 3 cut(s) 26, 343, 899
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 4 cut(s) 238, 1310, 1350, 1387
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 8 cut(s) 74, 428, 945, 1121, 1383, 1424, 1701, 1710
GlaI GCGC 1 cut(s) 1097
GluI GCNGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 681
HaeII RGCGCY 1 cut(s) 1099
HaeIII GGCC 4 cut(s) 319, 610, 1264, 1537
HapII CCGG 2 cut(s) 575, 1348
HhaI GCGC 1 cut(s) 1098
Hin1I GRCGYC 1 cut(s) 1096
Hin1II CATG 3 cut(s) 30, 347, 903
Hin6I GCGC 1 cut(s) 1096
HinP1I GCGC 1 cut(s) 1096
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 1682
HpaI GTTAAC 1 cut(s) 696
HpaII CCGG 2 cut(s) 575, 1348
HphI GGTGA 2 cut(s) 685, 925
Hpy166II GTNNAC 5 cut(s) 696, 725, 936, 1237, 1587
Hpy188I TCNGA 4 cut(s) 289, 517, 739, 1492
Hpy8I GTNNAC 5 cut(s) 696, 725, 936, 1237, 1587
HpyAV CCTTC 4 cut(s) 44, 152, 1057, 1351
HpyCH4III ACNGT 4 cut(s) 49, 673, 913, 1092
HpyCH4IV ACGT 2 cut(s) 555, 953
HpyCH4V TGCA 8 cut(s) 118, 302, 347, 449, 463, 885, 1290, 1567
HpyF10VI GCNNNNNNNGC 6 cut(s) 211, 220, 424, 449, 786, 1573
HpyF3I CTNAG 4 cut(s) 362, 850, 870, 1680
HpySE526I ACGT 2 cut(s) 555, 953
Hsp92I GRCGYC 1 cut(s) 1096
Hsp92II CATG 3 cut(s) 30, 347, 903
HspAI GCGC 1 cut(s) 1096
KasI GGCGCC 1 cut(s) 1095
Kpn2I TCCGGA 1 cut(s) 1347
KspAI GTTAAC 1 cut(s) 696
Kzo9I GATC 5 cut(s) 133, 311, 1512, 1561, 1675
LguI GCTCTTC 2 cut(s) 770, 1159
LmnI GCTCC 1 cut(s) 1379
Lsp1109I GCAGC 1 cut(s) 461
LweI GCATC 4 cut(s) 216, 356, 1288, 1422
MaeI CTAG 8 cut(s) 74, 428, 945, 1121, 1383, 1424, 1701, 1710
MaeII ACGT 2 cut(s) 555, 953
MaeIII GTNAC 2 cut(s) 635, 1086
MalI GATC 5 cut(s) 135, 313, 1514, 1563, 1677
MboI GATC 5 cut(s) 133, 311, 1512, 1561, 1675
MflI RGATCY 2 cut(s) 1512, 1561
MlsI TGGCCA 1 cut(s) 1537
MluNI TGGCCA 1 cut(s) 1537
Mly113I GGCGCC 1 cut(s) 1096
MlyI GAGTC 3 cut(s) 754, 884, 1487
Mox20I TGGCCA 1 cut(s) 1537
Mph1103I ATGCAT 2 cut(s) 120, 349
MroI TCCGGA 1 cut(s) 1347
MscI TGGCCA 1 cut(s) 1537
MslI CAYNNNNRTG 1 cut(s) 1276
Msp20I TGGCCA 1 cut(s) 1537
MspCI CTTAAG 2 cut(s) 820, 1544
MspI CCGG 2 cut(s) 575, 1348
MspR9I CCNGG 2 cut(s) 575, 612
Mva1269I GAATGC 3 cut(s) 304, 339, 465
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 6 cut(s) 211, 220, 424, 449, 786, 1573
NarI GGCGCC 1 cut(s) 1096
NciI CCSGG 1 cut(s) 575
NdeII GATC 5 cut(s) 133, 311, 1512, 1561, 1675
NlaIII CATG 3 cut(s) 30, 347, 903
NlaIV GGNNCC 4 cut(s) 373, 847, 1097, 1343
NsiI ATGCAT 2 cut(s) 120, 349
NspI RCATGY 1 cut(s) 30
PaeI GCATGC 1 cut(s) 30
PciSI GCTCTTC 2 cut(s) 770, 1159
PctI GAATGC 3 cut(s) 304, 339, 465
PfeI GAWTC 7 cut(s) 242, 431, 916, 1001, 1309, 1487, 1652
PfoI TCCNGGA 1 cut(s) 573
PkrI GCNGC 1 cut(s) 451
PleI GAGTC 3 cut(s) 753, 883, 1487
PluTI GGCGCC 1 cut(s) 1099
PpsI GAGTC 3 cut(s) 753, 883, 1487
PpuMI RGGWCCY 1 cut(s) 1342
PshBI ATTAAT 1 cut(s) 593
PsiI TTATAA 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 1342
Psp6I CCWGG 1 cut(s) 610
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 4 cut(s) 373, 847, 1097, 1343
PspPI GGNCC 1 cut(s) 1342
PspPPI RGGWCCY 1 cut(s) 1342
PstI CTGCAG 1 cut(s) 1569
PstNI CAGNNNCTG 1 cut(s) 1208
PsuI RGATCY 2 cut(s) 1512, 1561
RsaI GTAC 3 cut(s) 275, 937, 1080
RsaNI GTAC 3 cut(s) 274, 936, 1079
RseI CAYNNNNRTG 1 cut(s) 1276
SapI GCTCTTC 2 cut(s) 770, 1159
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 5 cut(s) 133, 311, 1512, 1561, 1675
Sau96I GGNCC 1 cut(s) 1342
SchI GAGTC 3 cut(s) 754, 884, 1487
ScrFI CCNGG 2 cut(s) 575, 612
SfaNI GCATC 4 cut(s) 216, 356, 1288, 1422
SfcI CTRYAG 1 cut(s) 1565
SfoI GGCGCC 1 cut(s) 1097
SinI GGWCC 1 cut(s) 1342
SmiMI CAYNNNNRTG 1 cut(s) 1276
SmlI CTYRAG 7 cut(s) 351, 477, 820, 1149, 1181, 1230, 1544
SmoI CTYRAG 7 cut(s) 351, 477, 820, 1149, 1181, 1230, 1544
SpeI ACTAGT 1 cut(s) 1120
SphI GCATGC 1 cut(s) 30
SsiI CCGC 4 cut(s) 155, 223, 1268, 1418
SspDI GGCGCC 1 cut(s) 1095
SspMI CTAG 8 cut(s) 74, 428, 945, 1121, 1383, 1424, 1701, 1710
StyD4I CCNGG 2 cut(s) 573, 610
StyI CCWWGG 1 cut(s) 1082
TaaI ACNGT 4 cut(s) 49, 673, 913, 1092
TaiI ACGT 2 cut(s) 558, 956
TaqI TCGA 2 cut(s) 235, 859
TatI WGTACW 1 cut(s) 935
TfiI GAWTC 7 cut(s) 242, 431, 916, 1001, 1309, 1487, 1652
TscAI CASTG 1 cut(s) 987
TseI GCWGC 1 cut(s) 449
TspDTI ATGAA 4 cut(s) 269, 332, 1131, 1597
TspGWI ACGGA 1 cut(s) 1310
TspRI CASTG 1 cut(s) 987
Vha464I CTTAAG 2 cut(s) 820, 1544
VpaK11BI GGWCC 1 cut(s) 1342
VspI ATTAAT 1 cut(s) 593
XapI RAATTY 4 cut(s) 357, 624, 768, 1530
XceI RCATGY 1 cut(s) 30
XcmI CCANNNNNNNNNTGG 1 cut(s) 327
XspI CTAG 8 cut(s) 74, 428, 945, 1121, 1383, 1424, 1701, 1710
Zsp2I ATGCAT 2 cut(s) 120, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.