Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 83 - 155 | 1.1e-16 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 24, 378 |
| Acc36I | ACCTGC | 2 cut(s) | 24, 378 |
| AccB1I | GGYRCC | 1 cut(s) | 404 |
| AccI | GTMKAC | 1 cut(s) | 161 |
| AciI | CCGC | 1 cut(s) | 395 |
| AcsI | RAATTY | 5 cut(s) | 276, 311, 355, 446, 483 |
| AcuI | CTGAAG | 1 cut(s) | 273 |
| AfaI | GTAC | 2 cut(s) | 54, 229 |
| AgsI | TTSAA | 1 cut(s) | 451 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 32, 64 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 276, 308 |
| AluBI | AGCT | 2 cut(s) | 61, 196 |
| AluI | AGCT | 2 cut(s) | 61, 196 |
| Alw26I | GTCTC | 2 cut(s) | 252, 361 |
| ApeKI | GCWGC | 1 cut(s) | 196 |
| ApoI | RAATTY | 5 cut(s) | 276, 311, 355, 446, 483 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| BanI | GGYRCC | 1 cut(s) | 404 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 211, 243 |
| BbvI | GCAGC | 1 cut(s) | 183 |
| BccI | CCATC | 2 cut(s) | 106, 184 |
| BcoDI | GTCTC | 2 cut(s) | 252, 361 |
| BfuAI | ACCTGC | 2 cut(s) | 24, 378 |
| BisI | GCNGC | 1 cut(s) | 197 |
| BlsI | GCNGC | 1 cut(s) | 198 |
| BmiI | GGNNCC | 1 cut(s) | 406 |
| BmsI | GCATC | 1 cut(s) | 148 |
| BsaJI | CCNNGG | 1 cut(s) | 408 |
| Bse1I | ACTGG | 2 cut(s) | 266, 439 |
| BseDI | CCNNGG | 1 cut(s) | 408 |
| BseGI | GGATG | 1 cut(s) | 270 |
| BseNI | ACTGG | 2 cut(s) | 266, 439 |
| BseRI | GAGGAG | 1 cut(s) | 425 |
| BseXI | GCAGC | 1 cut(s) | 183 |
| BshNI | GGYRCC | 1 cut(s) | 404 |
| BslFI | GGGAC | 1 cut(s) | 297 |
| BsmAI | GTCTC | 2 cut(s) | 252, 361 |
| BsmFI | GGGAC | 1 cut(s) | 297 |
| BspACI | CCGC | 1 cut(s) | 395 |
| BspLI | GGNNCC | 1 cut(s) | 406 |
| BspMI | ACCTGC | 2 cut(s) | 24, 378 |
| BspT107I | GGYRCC | 1 cut(s) | 404 |
| BsrI | ACTGG | 2 cut(s) | 266, 439 |
| BssECI | CCNNGG | 1 cut(s) | 408 |
| BssNAI | GTATAC | 1 cut(s) | 162 |
| Bst1107I | GTATAC | 1 cut(s) | 162 |
| Bst4CI | ACNGT | 2 cut(s) | 166, 335 |
| BstC8I | GCNNGC | 1 cut(s) | 342 |
| BstF5I | GGATG | 1 cut(s) | 270 |
| BstMAI | GTCTC | 2 cut(s) | 252, 361 |
| BstV1I | GCAGC | 1 cut(s) | 183 |
| BstZ17I | GTATAC | 1 cut(s) | 162 |
| BtsCI | GGATG | 1 cut(s) | 270 |
| BtsIMutI | CAGTG | 1 cut(s) | 446 |
| BveI | ACCTGC | 2 cut(s) | 24, 378 |
| Cac8I | GCNNGC | 1 cut(s) | 342 |
| Csp6I | GTAC | 2 cut(s) | 53, 228 |
| CviAII | CATG | 5 cut(s) | 56, 152, 235, 290, 373 |
| CviJI | RGCY | 3 cut(s) | 61, 196, 251 |
| CviKI_1 | RGCY | 3 cut(s) | 61, 196, 251 |
| CviQI | GTAC | 2 cut(s) | 53, 228 |
| Eco57I | CTGAAG | 1 cut(s) | 273 |
| EcoRI | GAATTC | 1 cut(s) | 446 |
| FaeI | CATG | 5 cut(s) | 59, 155, 238, 293, 376 |
| FaqI | GGGAC | 1 cut(s) | 297 |
| FatI | CATG | 5 cut(s) | 55, 151, 234, 289, 372 |
| FblI | GTMKAC | 1 cut(s) | 161 |
| Fnu4HI | GCNGC | 1 cut(s) | 197 |
| FokI | GGATG | 1 cut(s) | 277 |
| Fsp4HI | GCNGC | 1 cut(s) | 197 |
| GluI | GCNGC | 1 cut(s) | 197 |
| Hin1II | CATG | 5 cut(s) | 59, 155, 238, 293, 376 |
| HinfI | GANTC | 1 cut(s) | 77 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy166II | GTNNAC | 1 cut(s) | 162 |
| Hpy188I | TCNGA | 3 cut(s) | 171, 297, 366 |
| Hpy8I | GTNNAC | 1 cut(s) | 162 |
| HpyAV | CCTTC | 4 cut(s) | 216, 241, 248, 345 |
| HpyCH4III | ACNGT | 2 cut(s) | 166, 335 |
| HpyCH4V | TGCA | 2 cut(s) | 199, 330 |
| Hsp92II | CATG | 5 cut(s) | 59, 155, 238, 293, 376 |
| LmnI | GCTCC | 1 cut(s) | 193 |
| LpnPI | CCDG | 6 cut(s) | 19, 159, 247, 326, 373, 452 |
| Lsp1109I | GCAGC | 1 cut(s) | 183 |
| LweI | GCATC | 1 cut(s) | 148 |
| MboII | GAAGA | 2 cut(s) | 231, 427 |
| MluCI | AATT | 7 cut(s) | 15, 87, 276, 311, 355, 446, 483 |
| MnlI | CCTC | 5 cut(s) | 149, 264, 403, 406, 415 |
| MseI | TTAA | 3 cut(s) | 14, 86, 306 |
| MslI | CAYNNNNRTG | 2 cut(s) | 375, 377 |
| NlaIII | CATG | 5 cut(s) | 59, 155, 238, 293, 376 |
| NlaIV | GGNNCC | 1 cut(s) | 406 |
| NmeAIII | GCCGAG | 1 cut(s) | 433 |
| PaqCI | CACCTGC | 2 cut(s) | 24, 378 |
| PfeI | GAWTC | 1 cut(s) | 77 |
| PkrI | GCNGC | 1 cut(s) | 198 |
| PspN4I | GGNNCC | 1 cut(s) | 406 |
| RsaI | GTAC | 2 cut(s) | 54, 229 |
| RsaNI | GTAC | 2 cut(s) | 53, 228 |
| RseI | CAYNNNNRTG | 2 cut(s) | 375, 377 |
| SaqAI | TTAA | 3 cut(s) | 14, 86, 306 |
| SatI | GCNGC | 1 cut(s) | 197 |
| SetI | ASST | 5 cut(s) | 38, 63, 186, 198, 392 |
| SfaNI | GCATC | 1 cut(s) | 148 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 375, 377 |
| Sse9I | AATT | 7 cut(s) | 15, 87, 276, 311, 355, 446, 483 |
| SsiI | CCGC | 1 cut(s) | 395 |
| TaaI | ACNGT | 2 cut(s) | 166, 335 |
| TasI | AATT | 7 cut(s) | 15, 87, 276, 311, 355, 446, 483 |
| TfiI | GAWTC | 1 cut(s) | 77 |
| Tru1I | TTAA | 3 cut(s) | 14, 86, 306 |
| Tru9I | TTAA | 3 cut(s) | 14, 86, 306 |
| TscAI | CASTG | 1 cut(s) | 446 |
| TseI | GCWGC | 1 cut(s) | 196 |
| TspDTI | ATGAA | 3 cut(s) | 90, 278, 389 |
| TspRI | CASTG | 1 cut(s) | 446 |
| XapI | RAATTY | 5 cut(s) | 276, 311, 355, 446, 483 |
| XmiI | GTMKAC | 1 cut(s) | 161 |