pycom07g18710

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000194
Physical Location & Seq
Reverse (-)
21116015 .. 21116555
541 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g18710.2

Sequence Viewer

Length: 378 bp
ATGCATAACGTGAACGTGAGGTGCTCATTGGCAAGTCCTAAGTGGCCAACGGTCCACCCTTGGAGGGATGTTTGGGTCCCGAATATACCAACAGGTCATCTTATTCCCACTGACGATGGCTCGATGGACTTGGATCAGACTGTTGACTCAATCATTAATCAGGACGCGGGGATTTGGGATTTGACTCCAATCTCCAATGTTATTTCGACGTTGGATAGAACGGCGATCGAAGGTTCTTTTGGTGACCCTGCGAGACCGGACCACCTTATTTGGCGGACGGAAAGGAATGGAAACTATACCGTTAAATCGGGATATCGTTGGGTAAACATCCGTAGCGTGTTGCCAATGTTGGAACGGACCCACAAGTTTGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

126

Amino Acids

14.24

Weight (kDa)

6.49

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 167
AciI CCGC 2 cut(s) 167, 274
AclWI GGATC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 1 cut(s) 141
AoxI GGCC 1 cut(s) 44
AseI ATTAAT 1 cut(s) 156
AspS9I GGNCC 4 cut(s) 52, 76, 259, 357
AsuHPI GGTGA 1 cut(s) 254
AvaII GGWCC 4 cut(s) 52, 76, 259, 357
BalI TGGCCA 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 26
BccI CCATC 2 cut(s) 110, 118
BceAI ACGGC 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 247
Bme18I GGWCC 4 cut(s) 52, 76, 259, 357
BmgT120I GGNCC 4 cut(s) 52, 76, 259, 357
BmiI GGNNCC 3 cut(s) 77, 78, 359
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 2 cut(s) 73, 327
BseLI CCNNNNNNNGG 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 133, 225
BspACI CCGC 2 cut(s) 167, 274
BspANI GGCC 1 cut(s) 46
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 3 cut(s) 77, 78, 359
BspPI GGATC 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 2 cut(s) 133, 225
BssT1I CCWWGG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 52, 142, 301
BstDEI CTNAG 1 cut(s) 39
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 2 cut(s) 73, 327
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 2 cut(s) 136, 228
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 2 cut(s) 133, 225
BstMCI CGRYCG 1 cut(s) 228
BstPI GGTNACC 1 cut(s) 242
BstUI CGCG 1 cut(s) 167
BstXI CCANNNNNNTGG 1 cut(s) 368
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 2 cut(s) 73, 327
BtsIMutI CAGTG 1 cut(s) 108
Cfr13I GGNCC 4 cut(s) 52, 76, 259, 357
CseI GACGC 1 cut(s) 173
CspCI CAANNNNNGTGG 2 cut(s) 251, 286
CviJI RGCY 2 cut(s) 46, 120
CviKI_1 RGCY 2 cut(s) 46, 120
DdeI CTNAG 1 cut(s) 39
DpnI GATC 2 cut(s) 135, 227
DpnII GATC 2 cut(s) 133, 225
EaeI YGGCCR 1 cut(s) 44
EciI GGCGGA 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 247
Eco32I GATATC 1 cut(s) 314
Eco47I GGWCC 4 cut(s) 52, 76, 259, 357
Eco91I GGTNACC 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 76
EcoO65I GGTNACC 1 cut(s) 242
EcoRV GATATC 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 59
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 59
FaiI YATR 3 cut(s) 6, 86, 297
FaqI GGGAC 1 cut(s) 62
FauI CCCGC 1 cut(s) 160
FokI GGATG 2 cut(s) 80, 314
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 2 cut(s) 146, 184
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 4 cut(s) 13, 55, 145, 325
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 3 cut(s) 79, 161, 309
Hpy8I GTNNAC 4 cut(s) 13, 55, 145, 325
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 3 cut(s) 52, 142, 301
HpyCH4IV ACGT 3 cut(s) 9, 15, 209
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 3 cut(s) 9, 15, 209
KflI GGGWCCC 1 cut(s) 76
Kzo9I GATC 2 cut(s) 133, 225
LpnPI CCDG 4 cut(s) 78, 146, 261, 270
MaeII ACGT 3 cut(s) 9, 15, 209
MaeIII GTNAC 1 cut(s) 242
MalI GATC 2 cut(s) 135, 227
MboI GATC 2 cut(s) 133, 225
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 46
MluNI TGGCCA 1 cut(s) 46
MlyI GAGTC 2 cut(s) 140, 178
MmeI TCCRAC 2 cut(s) 192, 330
MnlI CCTC 2 cut(s) 12, 57
Mox20I TGGCCA 1 cut(s) 46
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 46
MseI TTAA 2 cut(s) 156, 303
Msp20I TGGCCA 1 cut(s) 46
MspI CCGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 167
NdeII GATC 2 cut(s) 133, 225
NlaIV GGNNCC 3 cut(s) 77, 78, 359
NmuCI GTSAC 1 cut(s) 242
NsiI ATGCAT 1 cut(s) 6
Ple19I CGATCG 1 cut(s) 228
PleI GAGTC 2 cut(s) 140, 178
PpsI GAGTC 2 cut(s) 140, 178
PpuMI RGGWCCY 1 cut(s) 76
PshBI ATTAAT 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 76
PspEI GGTNACC 1 cut(s) 242
PspN4I GGNNCC 3 cut(s) 77, 78, 359
PspPI GGNCC 4 cut(s) 52, 76, 259, 357
PspPPI RGGWCCY 1 cut(s) 76
PvuI CGATCG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 156, 303
Sau3AI GATC 2 cut(s) 133, 225
Sau96I GGNCC 4 cut(s) 52, 76, 259, 357
SchI GAGTC 2 cut(s) 140, 178
SduI GDGCHC 1 cut(s) 26
SetI ASST 7 cut(s) 12, 18, 23, 97, 212, 235, 267
SinI GGWCC 4 cut(s) 52, 76, 259, 357
SsiI CCGC 2 cut(s) 167, 274
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 3 cut(s) 52, 142, 301
TaiI ACGT 3 cut(s) 12, 18, 212
TaqI TCGA 3 cut(s) 122, 206, 228
Tru1I TTAA 2 cut(s) 156, 303
Tru9I TTAA 2 cut(s) 156, 303
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspGWI ACGGA 3 cut(s) 293, 320, 370
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 4 cut(s) 52, 76, 259, 357
VspI ATTAAT 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.