Rmu_sc0000808.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000808.1
OG0000194
Physical Location & Seq
Reverse (-)
867 .. 6109
5243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000808.1_g000001.1.cds

Sequence Viewer

Length: 900 bp
atggctggtagagaggttctcataaaatcagtcgctctagcagtgcctacttaccctatgcattgcttcagatttcctattactctgtgcaaggaattggactctttgattgccaagttttggtgggggcaaaaagatgacgagcacaaagtccattggaagagttgggattacttggggatgccaaaatctgagggtggtatgggttttagaaacctgactgagtttaatactgccctgcttgcaaaggaggtttggaggcttcacacaaatccgaaggcgttttgggctcaagtgataaaagggatttatttccccaatgctgacatccttcaagctgggataggctctagagcctcgtgggcatggagtagcctattgccggttcatgctaatgctcctacaaaggttgcagagcttatcaattgggataatcttagctggaatactgaccctatcagggaccttatcaccgatgatgatcaattggccattctgaaaactactttgggagatccaaatatggaggataggctggtctggccaatgtctaattctggcagctattctgtaaggtcaggatacaatttctcccatataaatacctatcttccttctgttatggcaccaaagatgaggcacattgatactaaacgactggatgatgactgtgcaaaggctatagcagctggaatgatgcatggtttacagcatctcgttttctctctatttctccgtagtctcttggcaaatttgtcttcattgcgaagtctcttcaccactgaactttcttttactagagttggaccttccttcggccttgggagatgtcctcatcttgcaatacaacctggtcttacaattagcaaaaagccaaaagacaattatccaagaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

299

Amino Acids

33.76

Weight (kDa)

9.1

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 625
AccB7I CCANNNNNTGG 1 cut(s) 120
AclWI GGATC 1 cut(s) 509
AcoI YGGCCR 2 cut(s) 489, 542
AcsI RAATTY 1 cut(s) 751
AcuI CTGAAG 1 cut(s) 52
AfiI CCNNNNNNNGG 4 cut(s) 120, 382, 460, 815
AgsI TTSAA 1 cut(s) 335
AjnI CCWGG 1 cut(s) 850
AjuI GAANNNNNNNTTGG 4 cut(s) 491, 523, 538, 570
AluBI AGCT 5 cut(s) 338, 418, 441, 564, 689
AluI AGCT 5 cut(s) 338, 418, 441, 564, 689
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 746, 776
AlwI GGATC 1 cut(s) 509
AoxI GGCC 3 cut(s) 489, 542, 817
ApeKI GCWGC 2 cut(s) 561, 686
ApoI RAATTY 1 cut(s) 751
AspS9I GGNCC 2 cut(s) 463, 806
AsuHPI GGTGA 2 cut(s) 463, 769
AvaII GGWCC 2 cut(s) 463, 806
BalI TGGCCA 2 cut(s) 491, 544
BanI GGYRCC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 292
BauI CACGAG 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 750
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 573, 698
BciT130I CCWGG 1 cut(s) 852
BciVI GTATCC 1 cut(s) 575
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 746, 776
BfaI CTAG 3 cut(s) 38, 351, 798
BfmI CTRYAG 1 cut(s) 681
BfuI GTATCC 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 362
BisI GCNGC 2 cut(s) 562, 687
BlsI GCNGC 2 cut(s) 563, 688
Bme1390I CCNGG 1 cut(s) 852
Bme18I GGWCC 2 cut(s) 463, 806
BmgT120I GGNCC 2 cut(s) 463, 806
BmiI GGNNCC 2 cut(s) 464, 627
BmrFI CCNGG 1 cut(s) 852
BmsI GCATC 3 cut(s) 171, 687, 721
BpiI GAAGAC 1 cut(s) 750
BplI GAGNNNNNCTC 3 cut(s) 35, 817, 849
BpuEI CTTGAG 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 820
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 382, 460, 815
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 663
Bse3DI GCAATG 2 cut(s) 61, 761
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 1 cut(s) 820
BseGI GGATG 3 cut(s) 186, 327, 667
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 4 cut(s) 120, 382, 460, 815
BseMI GCAATG 2 cut(s) 61, 761
BseMII CTCAG 2 cut(s) 183, 213
BseNI ACTGG 1 cut(s) 663
BseXI GCAGC 2 cut(s) 573, 698
BseYI CCCAGC 1 cut(s) 338
BshFI GGCC 3 cut(s) 491, 544, 819
BshNI GGYRCC 1 cut(s) 625
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 4 cut(s) 120, 382, 460, 815
BsmAI GTCTC 2 cut(s) 746, 776
BsmFI GGGAC 1 cut(s) 476
BsnI GGCC 3 cut(s) 491, 544, 819
Bsp1286I GDGCHC 2 cut(s) 147, 292
Bsp143I GATC 2 cut(s) 481, 514
BspANI GGCC 3 cut(s) 491, 544, 819
BspCNI CTCAG 2 cut(s) 184, 214
BspLI GGNNCC 2 cut(s) 464, 627
BspPI GGATC 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 625
BsrDI GCAATG 2 cut(s) 61, 761
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 1 cut(s) 663
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 820
BssMI GATC 2 cut(s) 481, 514
BssSI CACGAG 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 820
Bst2BI CACGAG 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 1 cut(s) 671
Bst6I CTCTTC 2 cut(s) 155, 779
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 192, 222, 437
BstF5I GGATG 3 cut(s) 186, 327, 667
BstKTI GATC 2 cut(s) 484, 517
BstMAI GTCTC 2 cut(s) 746, 776
BstMBI GATC 2 cut(s) 481, 514
BstMWI GCNNNNNNNGC 5 cut(s) 242, 287, 362, 541, 686
BstNI CCWGG 1 cut(s) 852
BstSCI CCNGG 1 cut(s) 850
BstSFI CTRYAG 1 cut(s) 681
BstV1I GCAGC 2 cut(s) 573, 698
BstV2I GAAGAC 1 cut(s) 750
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 3 cut(s) 491, 544, 819
BtsCI GGATG 3 cut(s) 186, 327, 667
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 48, 780
Cac8I GCNNGC 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 2 cut(s) 463, 806
CsiI ACCWGGT 1 cut(s) 850
CviAII CATG 3 cut(s) 366, 389, 701
DdeI CTNAG 3 cut(s) 192, 222, 437
DpnI GATC 2 cut(s) 483, 516
DpnII GATC 2 cut(s) 481, 514
EaeI YGGCCR 2 cut(s) 489, 542
Eam1104I CTCTTC 2 cut(s) 155, 779
EarI CTCTTC 2 cut(s) 155, 779
Eco130I CCWWGG 1 cut(s) 820
Eco24I GRGCYC 1 cut(s) 292
Eco47I GGWCC 2 cut(s) 463, 806
Eco57I CTGAAG 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 850
EcoT14I CCWWGG 1 cut(s) 820
EcoT22I ATGCAT 2 cut(s) 63, 702
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 820
FaeI CATG 3 cut(s) 369, 392, 704
FaqI GGGAC 1 cut(s) 476
FatI CATG 3 cut(s) 365, 388, 700
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 562, 687
FokI GGATG 3 cut(s) 193, 314, 674
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 2 cut(s) 562, 687
FspBI CTAG 3 cut(s) 38, 351, 798
GluI GCNGC 2 cut(s) 562, 687
GsaI CCCAGC 1 cut(s) 342
HaeIII GGCC 3 cut(s) 491, 544, 819
HapII CCGG 1 cut(s) 383
Hin1II CATG 3 cut(s) 369, 392, 704
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 383
HphI GGTGA 2 cut(s) 463, 769
Hpy166II GTNNAC 1 cut(s) 707
Hpy188I TCNGA 4 cut(s) 71, 193, 276, 498
Hpy188III TCNNGA 2 cut(s) 351, 579
Hpy8I GTNNAC 1 cut(s) 707
HpyAV CCTTC 5 cut(s) 271, 341, 624, 819, 823
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4V TGCA 7 cut(s) 61, 90, 245, 413, 674, 700, 842
HpyF10VI GCNNNNNNNGC 5 cut(s) 242, 287, 362, 541, 686
HpyF3I CTNAG 3 cut(s) 192, 222, 437
Hsp92II CATG 3 cut(s) 369, 392, 704
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 2 cut(s) 481, 514
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 2 cut(s) 573, 698
LweI GCATC 3 cut(s) 171, 687, 721
MabI ACCWGGT 1 cut(s) 850
MaeI CTAG 3 cut(s) 38, 351, 798
MalI GATC 2 cut(s) 483, 516
MboI GATC 2 cut(s) 481, 514
MboII GAAGA 4 cut(s) 172, 602, 750, 766
MfeI CAATTG 2 cut(s) 424, 485
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 2 cut(s) 147, 292
MlsI TGGCCA 2 cut(s) 491, 544
MluCI AATT 9 cut(s) 95, 424, 485, 553, 586, 751, 861, 883, 895
MluNI TGGCCA 2 cut(s) 491, 544
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 784
MnlI CCTC 8 cut(s) 7, 187, 244, 252, 367, 520, 630, 843
Mox20I TGGCCA 2 cut(s) 491, 544
Mph1103I ATGCAT 2 cut(s) 63, 702
MscI TGGCCA 2 cut(s) 491, 544
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 393
Msp20I TGGCCA 2 cut(s) 491, 544
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 852
MunI CAATTG 2 cut(s) 424, 485
MvaI CCWGG 1 cut(s) 852
MwoI GCNNNNNNNGC 5 cut(s) 242, 287, 362, 541, 686
NdeII GATC 2 cut(s) 481, 514
NlaIII CATG 3 cut(s) 369, 392, 704
NlaIV GGNNCC 2 cut(s) 464, 627
NsiI ATGCAT 2 cut(s) 63, 702
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 2 cut(s) 563, 688
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 463
Psp5II RGGWCCY 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 850
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 2 cut(s) 464, 627
PspPI GGNCC 2 cut(s) 463, 806
PspPPI RGGWCCY 1 cut(s) 463
PsuI RGATCY 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 689
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 2 cut(s) 562, 687
Sau3AI GATC 2 cut(s) 481, 514
Sau96I GGNCC 2 cut(s) 463, 806
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 852
SduI GDGCHC 2 cut(s) 147, 292
SexAI ACCWGGT 1 cut(s) 850
SfaNI GCATC 3 cut(s) 171, 687, 721
SfcI CTRYAG 1 cut(s) 681
SinI GGWCC 2 cut(s) 463, 806
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 9 cut(s) 95, 424, 485, 553, 586, 751, 861, 883, 895
SspMI CTAG 3 cut(s) 38, 351, 798
StyD4I CCNGG 1 cut(s) 850
StyI CCWWGG 1 cut(s) 820
TaaI ACNGT 1 cut(s) 671
TasI AATT 9 cut(s) 95, 424, 485, 553, 586, 751, 861, 883, 895
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 2 cut(s) 48, 787
TseI GCWGC 2 cut(s) 561, 686
TspDTI ATGAA 2 cut(s) 377, 750
TspGWI ACGGA 1 cut(s) 725
TspRI CASTG 2 cut(s) 48, 787
Van91I CCANNNNNTGG 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 463, 806
XapI RAATTY 1 cut(s) 751
XbaI TCTAGA 1 cut(s) 350
XspI CTAG 3 cut(s) 38, 351, 798
Zsp2I ATGCAT 2 cut(s) 63, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.