ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 630 |
| AcoI | YGGCCR | 1 cut(s) | 605 |
| AcsI | RAATTY | 2 cut(s) | 58, 93 |
| AcuI | CTGAAG | 3 cut(s) | 41, 230, 989 |
| AcyI | GRCGYC | 1 cut(s) | 295 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 305 |
| AgsI | TTSAA | 4 cut(s) | 76, 172, 789, 820 |
| AjnI | CCWGG | 1 cut(s) | 107 |
| AluBI | AGCT | 5 cut(s) | 160, 481, 620, 782, 951 |
| AluI | AGCT | 5 cut(s) | 160, 481, 620, 782, 951 |
| Alw21I | GWGCWC | 2 cut(s) | 162, 483 |
| Alw26I | GTCTC | 1 cut(s) | 857 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 855 |
| AoxI | GGCC | 3 cut(s) | 105, 177, 605 |
| ApeKI | GCWGC | 2 cut(s) | 671, 927 |
| ApoI | RAATTY | 2 cut(s) | 58, 93 |
| AseI | ATTAAT | 1 cut(s) | 711 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 455, 815 |
| AspS9I | GGNCC | 2 cut(s) | 178, 906 |
| AsuC2I | CCSGG | 2 cut(s) | 869, 978 |
| AsuHPI | GGTGA | 2 cut(s) | 451, 516 |
| AvaII | GGWCC | 1 cut(s) | 906 |
| AxyI | CCTNAGG | 1 cut(s) | 678 |
| BalI | TGGCCA | 1 cut(s) | 607 |
| BanII | GRGCYC | 2 cut(s) | 162, 483 |
| BbsI | GAAGAC | 2 cut(s) | 29, 597 |
| Bbv12I | GWGCWC | 2 cut(s) | 162, 483 |
| BbvI | GCAGC | 2 cut(s) | 658, 914 |
| BccI | CCATC | 2 cut(s) | 396, 711 |
| BciT130I | CCWGG | 1 cut(s) | 109 |
| BciVI | GTATCC | 1 cut(s) | 215 |
| BclI | TGATCA | 1 cut(s) | 429 |
| BcnI | CCSGG | 2 cut(s) | 869, 978 |
| BcoDI | GTCTC | 1 cut(s) | 857 |
| BfaI | CTAG | 1 cut(s) | 53 |
| BfuI | GTATCC | 1 cut(s) | 215 |
| BisI | GCNGC | 2 cut(s) | 672, 928 |
| BlsI | GCNGC | 2 cut(s) | 673, 929 |
| Bme1390I | CCNGG | 3 cut(s) | 109, 869, 978 |
| Bme18I | GGWCC | 1 cut(s) | 906 |
| BmgT120I | GGNCC | 2 cut(s) | 178, 906 |
| BmiI | GGNNCC | 2 cut(s) | 408, 812 |
| BmrFI | CCNGG | 3 cut(s) | 109, 869, 978 |
| BpiI | GAAGAC | 2 cut(s) | 29, 597 |
| BpuMI | CCSGG | 2 cut(s) | 869, 978 |
| Bsa29I | ATCGAT | 2 cut(s) | 400, 454 |
| BsaHI | GRCGYC | 1 cut(s) | 295 |
| BsaJI | CCNNGG | 1 cut(s) | 902 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 305 |
| Bse21I | CCTNAGG | 1 cut(s) | 678 |
| Bse3DI | GCAATG | 1 cut(s) | 883 |
| BseBI | CCWGG | 1 cut(s) | 109 |
| BseCI | ATCGAT | 2 cut(s) | 400, 454 |
| BseDI | CCNNGG | 1 cut(s) | 902 |
| BseGI | GGATG | 1 cut(s) | 750 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 305 |
| BseMI | GCAATG | 1 cut(s) | 883 |
| BseMII | CTCAG | 1 cut(s) | 669 |
| BseXI | GCAGC | 2 cut(s) | 658, 914 |
| BseYI | CCCAGC | 1 cut(s) | 326 |
| Bsh1285I | CGRYCG | 1 cut(s) | 292 |
| BshFI | GGCC | 3 cut(s) | 107, 179, 607 |
| BshVI | ATCGAT | 2 cut(s) | 400, 454 |
| BsiEI | CGRYCG | 1 cut(s) | 292 |
| BsiHKAI | GWGCWC | 2 cut(s) | 162, 483 |
| BsiSI | CCGG | 2 cut(s) | 869, 978 |
| BslFI | GGGAC | 3 cut(s) | 347, 473, 685 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 305 |
| BsmAI | GTCTC | 1 cut(s) | 857 |
| BsmFI | GGGAC | 3 cut(s) | 347, 473, 685 |
| BsnI | GGCC | 3 cut(s) | 107, 179, 607 |
| Bsp1286I | GDGCHC | 2 cut(s) | 162, 483 |
| Bsp143I | GATC | 3 cut(s) | 49, 397, 429 |
| BspANI | GGCC | 3 cut(s) | 107, 179, 607 |
| BspCNI | CTCAG | 1 cut(s) | 670 |
| BspDI | ATCGAT | 2 cut(s) | 400, 454 |
| BspLI | GGNNCC | 2 cut(s) | 408, 812 |
| BsrDI | GCAATG | 1 cut(s) | 883 |
| BssECI | CCNNGG | 1 cut(s) | 902 |
| BssMI | GATC | 3 cut(s) | 49, 397, 429 |
| BssNI | GRCGYC | 1 cut(s) | 295 |
| BssT1I | CCWWGG | 1 cut(s) | 902 |
| Bst2UI | CCWGG | 1 cut(s) | 109 |
| Bst4CI | ACNGT | 3 cut(s) | 290, 355, 653 |
| BstACI | GRCGYC | 1 cut(s) | 295 |
| BstC8I | GCNNGC | 2 cut(s) | 200, 622 |
| BstDEI | CTNAG | 1 cut(s) | 678 |
| BstEII | GGTNACC | 1 cut(s) | 644 |
| BstF5I | GGATG | 1 cut(s) | 750 |
| BstKTI | GATC | 3 cut(s) | 52, 400, 432 |
| BstMAI | GTCTC | 1 cut(s) | 857 |
| BstMBI | GATC | 3 cut(s) | 49, 397, 429 |
| BstMCI | CGRYCG | 1 cut(s) | 292 |
| BstNI | CCWGG | 1 cut(s) | 109 |
| BstPI | GGTNACC | 1 cut(s) | 644 |
| BstSCI | CCNGG | 3 cut(s) | 107, 867, 976 |
| BstV1I | GCAGC | 2 cut(s) | 658, 914 |
| BstV2I | GAAGAC | 2 cut(s) | 29, 597 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 807 |
| Bsu15I | ATCGAT | 2 cut(s) | 400, 454 |
| Bsu36I | CCTNAGG | 1 cut(s) | 678 |
| BsuI | GTATCC | 1 cut(s) | 215 |
| BsuRI | GGCC | 3 cut(s) | 107, 179, 607 |
| BsuTUI | ATCGAT | 2 cut(s) | 400, 454 |
| BtsCI | GGATG | 1 cut(s) | 750 |
| BtsIMutI | CAGTG | 1 cut(s) | 649 |
| Cac8I | GCNNGC | 2 cut(s) | 200, 622 |
| CaiI | CAGNNNCTG | 1 cut(s) | 855 |
| Cfr13I | GGNCC | 2 cut(s) | 178, 906 |
| ClaI | ATCGAT | 2 cut(s) | 400, 454 |
| CseI | GACGC | 1 cut(s) | 284 |
| CviAII | CATG | 2 cut(s) | 303, 801 |
| DdeI | CTNAG | 1 cut(s) | 678 |
| DpnI | GATC | 3 cut(s) | 51, 399, 431 |
| DpnII | GATC | 3 cut(s) | 49, 397, 429 |
| EaeI | YGGCCR | 1 cut(s) | 605 |
| Ecl136II | GAGCTC | 2 cut(s) | 160, 481 |
| Eco130I | CCWWGG | 1 cut(s) | 902 |
| Eco147I | AGGCCT | 1 cut(s) | 107 |
| Eco24I | GRGCYC | 2 cut(s) | 162, 483 |
| Eco32I | GATATC | 2 cut(s) | 762, 941 |
| Eco47I | GGWCC | 1 cut(s) | 906 |
| Eco53kI | GAGCTC | 2 cut(s) | 160, 481 |
| Eco57I | CTGAAG | 3 cut(s) | 41, 230, 989 |
| Eco81I | CCTNAGG | 1 cut(s) | 678 |
| Eco91I | GGTNACC | 1 cut(s) | 644 |
| EcoICRI | GAGCTC | 2 cut(s) | 160, 481 |
| EcoO109I | RGGNCCY | 1 cut(s) | 178 |
| EcoO65I | GGTNACC | 1 cut(s) | 644 |
| EcoRII | CCWGG | 1 cut(s) | 107 |
| EcoRV | GATATC | 2 cut(s) | 762, 941 |
| EcoT14I | CCWWGG | 1 cut(s) | 902 |
| EcoT38I | GRGCYC | 2 cut(s) | 162, 483 |
| ErhI | CCWWGG | 1 cut(s) | 902 |
| FaeI | CATG | 2 cut(s) | 306, 804 |
| FaiI | YATR | 9 cut(s) | 41, 304, 351, 519, 630, 658, 802, 898, 984 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 582, 614 |
| FaqI | GGGAC | 3 cut(s) | 347, 473, 685 |
| FatI | CATG | 2 cut(s) | 302, 800 |
| FbaI | TGATCA | 1 cut(s) | 429 |
| Fnu4HI | GCNGC | 2 cut(s) | 672, 928 |
| FokI | GGATG | 1 cut(s) | 737 |
| FriOI | GRGCYC | 2 cut(s) | 162, 483 |
| Fsp4HI | GCNGC | 2 cut(s) | 672, 928 |
| FspBI | CTAG | 1 cut(s) | 53 |
| GluI | GCNGC | 2 cut(s) | 672, 928 |
| GsaI | CCCAGC | 1 cut(s) | 330 |
| HaeIII | GGCC | 3 cut(s) | 107, 179, 607 |
| HapII | CCGG | 2 cut(s) | 869, 978 |
| HgaI | GACGC | 1 cut(s) | 284 |
| Hin1I | GRCGYC | 1 cut(s) | 295 |
| Hin1II | CATG | 2 cut(s) | 306, 804 |
| HinfI | GANTC | 5 cut(s) | 25, 72, 451, 456, 747 |
| HpaII | CCGG | 2 cut(s) | 869, 978 |
| HphI | GGTGA | 2 cut(s) | 451, 516 |
| Hpy166II | GTNNAC | 1 cut(s) | 974 |
| Hpy188I | TCNGA | 4 cut(s) | 21, 49, 450, 938 |
| Hpy188III | TCNNGA | 9 cut(s) | 155, 208, 274, 391, 476, 677, 724, 744, 808 |
| Hpy8I | GTNNAC | 1 cut(s) | 974 |
| HpyAV | CCTTC | 8 cut(s) | 97, 178, 191, 309, 369, 538, 846, 902 |
| HpyCH4III | ACNGT | 3 cut(s) | 290, 355, 653 |
| HpyCH4V | TGCA | 1 cut(s) | 849 |
| HpyF3I | CTNAG | 1 cut(s) | 678 |
| Hsp92I | GRCGYC | 1 cut(s) | 295 |
| Hsp92II | CATG | 2 cut(s) | 306, 804 |
| Ksp22I | TGATCA | 1 cut(s) | 429 |
| Kzo9I | GATC | 3 cut(s) | 49, 397, 429 |
| LmnI | GCTCC | 2 cut(s) | 478, 679 |
| Lsp1109I | GCAGC | 2 cut(s) | 658, 914 |
| MaeI | CTAG | 1 cut(s) | 53 |
| MaeIII | GTNAC | 1 cut(s) | 644 |
| MalI | GATC | 3 cut(s) | 51, 399, 431 |
| MboI | GATC | 3 cut(s) | 49, 397, 429 |
| MboII | GAAGA | 4 cut(s) | 34, 223, 602, 687 |
| MfeI | CAATTG | 1 cut(s) | 876 |
| MhlI | GDGCHC | 2 cut(s) | 162, 483 |
| MlsI | TGGCCA | 1 cut(s) | 607 |
| MluCI | AATT | 8 cut(s) | 58, 93, 116, 321, 625, 766, 863, 876 |
| MluNI | TGGCCA | 1 cut(s) | 607 |
| MlyI | GAGTC | 2 cut(s) | 19, 741 |
| MmeI | TCCRAC | 2 cut(s) | 290, 485 |
| MnlI | CCTC | 7 cut(s) | 243, 324, 501, 535, 673, 899, 942 |
| Mox20I | TGGCCA | 1 cut(s) | 607 |
| MroXI | GAANNNNTTC | 2 cut(s) | 455, 815 |
| MscI | TGGCCA | 1 cut(s) | 607 |
| MseI | TTAA | 4 cut(s) | 234, 242, 687, 711 |
| Msp20I | TGGCCA | 1 cut(s) | 607 |
| MspI | CCGG | 2 cut(s) | 869, 978 |
| MspR9I | CCNGG | 3 cut(s) | 109, 869, 978 |
| MunI | CAATTG | 1 cut(s) | 876 |
| MvaI | CCWGG | 1 cut(s) | 109 |
| NciI | CCSGG | 2 cut(s) | 869, 978 |
| NdeII | GATC | 3 cut(s) | 49, 397, 429 |
| NlaIII | CATG | 2 cut(s) | 306, 804 |
| NlaIV | GGNNCC | 2 cut(s) | 408, 812 |
| PceI | AGGCCT | 1 cut(s) | 107 |
| PdmI | GAANNNNTTC | 2 cut(s) | 455, 815 |
| PfeI | GAWTC | 3 cut(s) | 72, 451, 456 |
| PfoI | TCCNGGA | 1 cut(s) | 867 |
| PkrI | GCNGC | 2 cut(s) | 673, 929 |
| PleI | GAGTC | 2 cut(s) | 19, 741 |
| PpsI | GAGTC | 2 cut(s) | 19, 741 |
| PshBI | ATTAAT | 1 cut(s) | 711 |
| PsiI | TTATAA | 1 cut(s) | 630 |
| Psp124BI | GAGCTC | 2 cut(s) | 162, 483 |
| Psp6I | CCWGG | 1 cut(s) | 107 |
| PspEI | GGTNACC | 1 cut(s) | 644 |
| PspFI | CCCAGC | 1 cut(s) | 326 |
| PspGI | CCWGG | 1 cut(s) | 107 |
| PspN4I | GGNNCC | 2 cut(s) | 408, 812 |
| PspPI | GGNCC | 2 cut(s) | 178, 906 |
| PstNI | CAGNNNCTG | 1 cut(s) | 855 |
| SacI | GAGCTC | 2 cut(s) | 162, 483 |
| SaqAI | TTAA | 4 cut(s) | 234, 242, 687, 711 |
| SatI | GCNGC | 2 cut(s) | 672, 928 |
| Sau3AI | GATC | 3 cut(s) | 49, 397, 429 |
| Sau96I | GGNCC | 2 cut(s) | 178, 906 |
| SchI | GAGTC | 2 cut(s) | 19, 741 |
| ScrFI | CCNGG | 3 cut(s) | 109, 869, 978 |
| SduI | GDGCHC | 2 cut(s) | 162, 483 |
| SinI | GGWCC | 1 cut(s) | 906 |
| Sse9I | AATT | 8 cut(s) | 58, 93, 116, 321, 625, 766, 863, 876 |
| SseBI | AGGCCT | 1 cut(s) | 107 |
| SspMI | CTAG | 1 cut(s) | 53 |
| SstI | GAGCTC | 2 cut(s) | 162, 483 |
| StuI | AGGCCT | 1 cut(s) | 107 |
| StyD4I | CCNGG | 3 cut(s) | 107, 867, 976 |
| StyI | CCWWGG | 1 cut(s) | 902 |
| TaaI | ACNGT | 3 cut(s) | 290, 355, 653 |
| TaqI | TCGA | 3 cut(s) | 154, 400, 454 |
| TasI | AATT | 8 cut(s) | 58, 93, 116, 321, 625, 766, 863, 876 |
| TfiI | GAWTC | 3 cut(s) | 72, 451, 456 |
| Tru1I | TTAA | 4 cut(s) | 234, 242, 687, 711 |
| Tru9I | TTAA | 4 cut(s) | 234, 242, 687, 711 |
| TscAI | CASTG | 1 cut(s) | 656 |
| TseI | GCWGC | 2 cut(s) | 671, 927 |
| TspDTI | ATGAA | 2 cut(s) | 86, 291 |
| TspRI | CASTG | 1 cut(s) | 656 |
| VpaK11BI | GGWCC | 1 cut(s) | 906 |
| VspI | ATTAAT | 1 cut(s) | 711 |
| XapI | RAATTY | 2 cut(s) | 58, 93 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 96 |
| XmnI | GAANNNNTTC | 2 cut(s) | 455, 815 |
| XspI | CTAG | 1 cut(s) | 53 |