Rh2DG065400

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000194
Physical Location & Seq
Forward (+)
4941784 .. 4942197
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG065400.1

Sequence Viewer

Length: 414 bp
ATGGACCCACATCTTAGAGTTTCCTCCATTATACATCCTATCAACCGGCAGTGGGATCTTCAATTGATACGCAGCTCTATCACGGCAGCTGAAACCACTGCTATTATGGCCATTCCACTCTCCCACCATGCATCTGTTGATCGACAAGTATGGCCTTACATATCCAATGGATGCTACTCTGTCAAGTCCAGATATCACCTTTGTCATCTCACCAGTAACCCTCTTCAATCAGTACATCCTCACACCTCTTTCCAAGTAGATTCTACTGTTTGGAAATGGATATGGGGTCTCTGTGCGACTCCCAAGGTGAAGCACTTCATATGGAGAGCCGTCTCAAATGCATTAGCTACCGACGATAATCGTCATCGGTGTCATCTTGCGACTTCACCCATCTGCCCTTTATGTGACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

137

Amino Acids

15.6

Weight (kDa)

8.87

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 59 - 136 1.8e-09 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 108
AfaI GTAC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 2 cut(s) 62, 227
AluBI AGCT 3 cut(s) 75, 89, 347
AluI AGCT 3 cut(s) 75, 89, 347
Alw26I GTCTC 2 cut(s) 293, 337
AlwI GGATC 1 cut(s) 63
AoxI GGCC 2 cut(s) 108, 152
ApeKI GCWGC 2 cut(s) 72, 86
Asp700I GAANNNNTTC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 4 cut(s) 188, 202, 319, 378
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 110
BbvI GCAGC 2 cut(s) 84, 98
BccI CCATC 1 cut(s) 398
BceAI ACGGC 2 cut(s) 99, 314
BcoDI GTCTC 2 cut(s) 293, 337
BisI GCNGC 2 cut(s) 73, 87
BlsI GCNGC 2 cut(s) 74, 88
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 140, 161
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 3 cut(s) 34, 176, 235
BseLI CCNNNNNNNGG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 84, 98
BshFI GGCC 2 cut(s) 110, 154
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 293, 337
BsmBI CGTCTC 1 cut(s) 337
BsnI GGCC 2 cut(s) 110, 154
Bso31I GGTCTC 1 cut(s) 293
Bsp143I GATC 2 cut(s) 55, 139
BspANI GGCC 2 cut(s) 110, 154
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 2 cut(s) 55, 139
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 3 cut(s) 34, 176, 235
BstKTI GATC 2 cut(s) 58, 142
BstMAI GTCTC 2 cut(s) 293, 337
BstMBI GATC 2 cut(s) 55, 139
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 84, 98
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 2 cut(s) 110, 154
BtsCI GGATG 3 cut(s) 34, 176, 235
BtsI GCAGTG 2 cut(s) 56, 96
BtsIMutI CAGTG 2 cut(s) 56, 96
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 233
CviAII CATG 1 cut(s) 128
CviJI RGCY 6 cut(s) 75, 89, 110, 154, 329, 347
CviKI_1 RGCY 6 cut(s) 75, 89, 110, 154, 329, 347
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 57, 141
DpnII GATC 2 cut(s) 55, 139
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 293
Eco32I GATATC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 2 cut(s) 133, 343
ErhI CCWWGG 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 1 cut(s) 131
FatI CATG 1 cut(s) 127
FauNDI CATATG 1 cut(s) 320
Fnu4HI GCNGC 2 cut(s) 73, 87
FokI GGATG 3 cut(s) 21, 183, 222
Fsp4HI GCNGC 2 cut(s) 73, 87
GluI GCNGC 2 cut(s) 73, 87
HaeIII GGCC 2 cut(s) 110, 154
HapII CCGG 1 cut(s) 46
Hin1II CATG 1 cut(s) 131
HinfI GANTC 3 cut(s) 260, 298, 407
HpaII CCGG 1 cut(s) 46
HphI GGTGA 4 cut(s) 188, 202, 319, 378
Hpy188III TCNNGA 1 cut(s) 189
Hpy99I CGWCG 1 cut(s) 356
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 131, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 1 cut(s) 131
Kzo9I GATC 2 cut(s) 55, 139
LpnPI CCDG 3 cut(s) 59, 202, 226
Lsp1109I GCAGC 2 cut(s) 84, 98
LweI GCATC 2 cut(s) 140, 161
MaeIII GTNAC 2 cut(s) 215, 404
MalI GATC 2 cut(s) 57, 141
MboI GATC 2 cut(s) 55, 139
MboII GAAGA 2 cut(s) 50, 215
MfeI CAATTG 1 cut(s) 62
MflI RGATCY 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 1 cut(s) 62
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 2 cut(s) 292, 401
MnlI CCTC 4 cut(s) 34, 231, 249, 256
Mox20I TGGCCA 1 cut(s) 110
Mph1103I ATGCAT 2 cut(s) 133, 343
MroXI GAANNNNTTC 1 cut(s) 314
MscI TGGCCA 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 1 cut(s) 46
MunI CAATTG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeI CATATG 1 cut(s) 320
NdeII GATC 2 cut(s) 55, 139
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 404
NsiI ATGCAT 2 cut(s) 133, 343
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 74, 88
PleI GAGTC 2 cut(s) 292, 401
PpsI GAGTC 2 cut(s) 292, 401
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SatI GCNGC 2 cut(s) 73, 87
Sau3AI GATC 2 cut(s) 55, 139
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 292, 401
SetI ASST 6 cut(s) 77, 91, 201, 248, 309, 349
SfaNI GCATC 2 cut(s) 140, 161
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 62
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 142
TasI AATT 1 cut(s) 62
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 2 cut(s) 56, 103
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 2 cut(s) 72, 86
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 1 cut(s) 307
TspRI CASTG 2 cut(s) 56, 103
VpaK11BI GGWCC 1 cut(s) 4
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 314
Zsp2I ATGCAT 2 cut(s) 133, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.