Rmu_sc0003765.1_g000016

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003765.1
OG0000194
Physical Location & Seq
Reverse (-)
70050 .. 71102
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003765.1_g000016.1.cds

Sequence Viewer

Length: 1053 bp
atggttgatgtttggaaggatagatggattccaaattctaaattaggagtgattgagccaatactaactagtaatcggtttacccctcttcaggtttgtgaattgattgatgaagatactaggagttggaaaattgatcacatcattccgttcatcactgacaaggacgcaagagttatttctgctactcctcttattaatccggaagaggatgacagattgatttggcctcatgagaaggatggaaattatagcgttaaaactggatatcattgcattagggaaagctcaacaatgcctcccataaatcaagcttctagctcacgctctctggattcgaaaatttggaagctttgctggggagtgaaaacaattccaaaaatttcaaattttctttggagagctttgaataatgccctcccaacctttgggaatctgtttagaaggaaaattactcctacccctttgtgtaaactctgcggtgaaggaatggagactgtggagcactgcttattactttgcccgtgggttgagagagtgtggtttgggtgtgctctaggagtcattatcaacaaagacagaattacaagctttgacagatggttatcaagttgcatcgactcctcaagtgtccctaagagtcaattgggttgggtgatgacttatataagcttcttgctttgggaaatttggaagatgaggtgctcagctgtttataaaaatgtgaacccttcacctgaccatacgattgggaggggcaatcttttggcctctgaatatcttgaagctaccatacacccgtccaccattccccatatccctctcaaccctgcccctcttattcaaagatggtctctaccaactgaccctattgtaaaggtgaatgttgatggtgcatgggatgcctcaaatctttattctggtgtcggagaaatgctcagggggcactgctgttgggttgcagtttatttggctattataactcctccattgaagctgaagctgctgctgttgtacaaggacttacagaggcatcaaggcttcatcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

350

Amino Acids

39.98

Weight (kDa)

8.4

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 717, 980
AccB7I CCANNNNNTGG 1 cut(s) 428
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 1 cut(s) 480
AcsI RAATTY 5 cut(s) 34, 342, 381, 388, 687
AcuI CTGAAG 2 cut(s) 74, 1019
AfaI GTAC 1 cut(s) 1016
AfiI CCNNNNNNNGG 2 cut(s) 91, 428
AgsI TTSAA 5 cut(s) 387, 409, 785, 845, 994
AhlI ACTAGT 1 cut(s) 68
Alw21I GWGCWC 3 cut(s) 507, 556, 707
Alw26I GTCTC 2 cut(s) 488, 858
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 2 cut(s) 227, 768
ApeKI GCWGC 2 cut(s) 1003, 1006
ApoI RAATTY 5 cut(s) 34, 342, 381, 388, 687
AseI ATTAAT 1 cut(s) 198
AsuHPI GGTGA 4 cut(s) 494, 667, 726, 892
AsuII TTCGAA 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 948
BarI GAAGNNNNNNTAC 4 cut(s) 436, 468, 777, 809
Bbv12I GWGCWC 3 cut(s) 507, 556, 707
BbvI GCAGC 2 cut(s) 990, 993
BccI CCATC 5 cut(s) 18, 236, 594, 843, 884
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 488, 858
BcuI ACTAGT 1 cut(s) 68
BfaI CTAG 4 cut(s) 69, 120, 318, 557
BisI GCNGC 2 cut(s) 1004, 1007
BlpI GCTNAGC 1 cut(s) 706
BlsI GCNGC 2 cut(s) 1005, 1008
BmsI GCATC 3 cut(s) 624, 892, 1042
BplI GAGNNNNNCTC 2 cut(s) 921, 953
Bpu10I CCTNAGC 1 cut(s) 938
Bpu1102I GCTNAGC 1 cut(s) 706
Bpu14I TTCGAA 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 610
BsaBI GATNNNNATC 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 858
BsaJI CCNNGG 1 cut(s) 524
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 428
Bse1I ACTGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 604
BseAI TCCGGA 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 524
BseGI GGATG 3 cut(s) 217, 247, 907
BseJI GATNNNNATC 1 cut(s) 604
BseLI CCNNNNNNNGG 2 cut(s) 91, 428
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 2 cut(s) 720, 952
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 3 cut(s) 180, 613, 975
BseSI GKGCMC 1 cut(s) 948
BseXI GCAGC 2 cut(s) 990, 993
BseYI CCCAGC 1 cut(s) 357
BshFI GGCC 2 cut(s) 229, 770
BsiHKAI GWGCWC 3 cut(s) 507, 556, 707
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 2 cut(s) 91, 428
BsmAI GTCTC 2 cut(s) 488, 858
BsmFI GGGAC 1 cut(s) 617
BsnI GGCC 2 cut(s) 229, 770
Bso31I GGTCTC 1 cut(s) 858
Bsp119I TTCGAA 1 cut(s) 338
Bsp1286I GDGCHC 4 cut(s) 507, 556, 707, 948
Bsp13I TCCGGA 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 1014
Bsp143I GATC 1 cut(s) 136
Bsp1720I GCTNAGC 1 cut(s) 706
BspACI CCGC 1 cut(s) 480
BspANI GGCC 2 cut(s) 229, 770
BspCNI CTCAG 2 cut(s) 719, 951
BspEI TCCGGA 1 cut(s) 202
BspHI TCATGA 1 cut(s) 232
BspT104I TTCGAA 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 858
BsrDI GCAATG 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 1014
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 524
BssMI GATC 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 499
Bst6I CTCTTC 2 cut(s) 93, 201
BstAPI GCANNNNNTGC 1 cut(s) 902
BstAUI TGTACA 1 cut(s) 1014
BstBI TTCGAA 1 cut(s) 338
BstDEI CTNAG 3 cut(s) 636, 706, 938
BstDSI CCRYGG 1 cut(s) 524
BstF5I GGATG 3 cut(s) 217, 247, 907
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 2 cut(s) 488, 858
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 902, 943, 1003
BstSLI GKGCMC 1 cut(s) 948
BstV1I GCAGC 2 cut(s) 990, 993
BstXI CCANNNNNNTGG 1 cut(s) 749
BsuRI GGCC 2 cut(s) 229, 770
BtgI CCRYGG 1 cut(s) 524
BtsCI GGATG 3 cut(s) 217, 247, 907
BtsI GCAGTG 2 cut(s) 505, 946
BtsIMutI CAGTG 3 cut(s) 156, 505, 946
CciI TCATGA 1 cut(s) 232
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 1015
CviAII CATG 2 cut(s) 233, 897
CviQI GTAC 1 cut(s) 1015
DdeI CTNAG 3 cut(s) 636, 706, 938
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 93, 201
EarI CTCTTC 2 cut(s) 93, 201
Eco31I GGTCTC 1 cut(s) 858
Eco32I GATATC 1 cut(s) 269
Eco57I CTGAAG 2 cut(s) 74, 1019
EcoRV GATATC 1 cut(s) 269
FaeI CATG 2 cut(s) 236, 900
FaqI GGGAC 1 cut(s) 617
FatI CATG 2 cut(s) 232, 896
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 1004, 1007
FokI GGATG 3 cut(s) 224, 254, 914
Fsp4HI GCNGC 2 cut(s) 1004, 1007
FspBI CTAG 4 cut(s) 69, 120, 318, 557
GluI GCNGC 2 cut(s) 1004, 1007
GsaI CCCAGC 1 cut(s) 361
HaeIII GGCC 2 cut(s) 229, 770
HapII CCGG 1 cut(s) 203
HgaI GACGC 1 cut(s) 176
Hin1II CATG 2 cut(s) 236, 900
HindIII AAGCTT 4 cut(s) 312, 350, 589, 670
HinfI GANTC 6 cut(s) 28, 335, 433, 561, 620, 640
HpaII CCGG 1 cut(s) 203
HphI GGTGA 4 cut(s) 494, 667, 726, 892
Hpy166II GTNNAC 4 cut(s) 81, 473, 727, 804
Hpy188I TCNGA 2 cut(s) 775, 929
Hpy188III TCNNGA 4 cut(s) 203, 233, 332, 782
Hpy8I GTNNAC 4 cut(s) 81, 473, 727, 804
HpyAV CCTTC 5 cut(s) 10, 232, 438, 479, 741
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4V TGCA 4 cut(s) 276, 615, 896, 962
HpyF10VI GCNNNNNNNGC 3 cut(s) 902, 943, 1003
HpyF3I CTNAG 3 cut(s) 636, 706, 938
Hsp92II CATG 2 cut(s) 236, 900
Kpn2I TCCGGA 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 502
LpnPI CCDG 9 cut(s) 77, 216, 249, 317, 343, 750, 843, 906, 925
Lsp1109I GCAGC 2 cut(s) 990, 993
LweI GCATC 3 cut(s) 624, 892, 1042
MaeI CTAG 4 cut(s) 69, 120, 318, 557
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 4 cut(s) 80, 125, 218, 706
MfeI CAATTG 1 cut(s) 644
MhlI GDGCHC 4 cut(s) 507, 556, 707, 948
MlyI GAGTC 3 cut(s) 570, 614, 649
MmeI TCCRAC 2 cut(s) 107, 907
MroI TCCGGA 1 cut(s) 202
MseI TTAA 2 cut(s) 198, 258
MspA1I CMGCKG 1 cut(s) 710
MspI CCGG 1 cut(s) 203
MunI CAATTG 1 cut(s) 644
MwoI GCNNNNNNNGC 3 cut(s) 902, 943, 1003
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 236, 900
NspV TTCGAA 1 cut(s) 338
PagI TCATGA 1 cut(s) 232
PfeI GAWTC 3 cut(s) 28, 335, 433
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 2 cut(s) 1005, 1008
PleI GAGTC 3 cut(s) 569, 614, 648
PpsI GAGTC 3 cut(s) 569, 614, 648
PshBI ATTAAT 1 cut(s) 198
PsiI TTATAA 2 cut(s) 717, 980
PspFI CCCAGC 1 cut(s) 357
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 1016
RsaNI GTAC 1 cut(s) 1015
SaqAI TTAA 2 cut(s) 198, 258
SatI GCNGC 2 cut(s) 1004, 1007
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 3 cut(s) 570, 614, 649
SduI GDGCHC 4 cut(s) 507, 556, 707, 948
SfaNI GCATC 3 cut(s) 624, 892, 1042
SfuI TTCGAA 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 625
SmoI CTYRAG 1 cut(s) 625
SpeI ACTAGT 1 cut(s) 68
SsiI CCGC 1 cut(s) 480
SspMI CTAG 4 cut(s) 69, 120, 318, 557
TaaI ACNGT 1 cut(s) 499
TaqI TCGA 2 cut(s) 338, 618
TatI WGTACW 1 cut(s) 1014
TfiI GAWTC 3 cut(s) 28, 335, 433
Tru1I TTAA 2 cut(s) 198, 258
Tru9I TTAA 2 cut(s) 198, 258
TscAI CASTG 3 cut(s) 163, 512, 953
TseI GCWGC 2 cut(s) 1003, 1006
TspDTI ATGAA 3 cut(s) 126, 142, 1033
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 3 cut(s) 163, 512, 953
Van91I CCANNNNNTGG 1 cut(s) 428
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 5 cut(s) 34, 342, 381, 388, 687
XspI CTAG 4 cut(s) 69, 120, 318, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.