Rmu_sc0006922.1_g000004

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006922.1
OG0000194
Physical Location & Seq
Forward (+)
8805 .. 9311
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006922.1_g000004.1.cds

Sequence Viewer

Length: 507 bp
atgggcattcgatctgttcataatccgggctcatacctcggccttcccaccatttggggaagatccaaagtttatgctcttgcttatgttaaagacaacattgccaaaaagatattgggttggaacaattcacatctttcacaagctgggaaagagattatgatcaaatatgtgggaatggcagttcccacatatacgatgtcagttttaaagtttctcaccaccttatgtaacaagatcaattattctcttgctgatttttggtggggcagtgcctcttctccgggaatccactggaaaaactggggatctctgtttcttccaaaatctgaaggaggtatagggtttcgcagtctagccgattttaatctagccttcttggccaaacaaggctggcgtattctctccactttgaatgctttgtgggtgtctgttcttaaacgtcggtactttccccattgttccttccttgaagctattcgaggaacatccccttcctcggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

168

Amino Acids

18.76

Weight (kDa)

10.05

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 54
AclWI GGATC 2 cut(s) 57, 316
AcoI YGGCCR 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 2 cut(s) 54, 499
AgsI TTSAA 2 cut(s) 415, 473
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 2 cut(s) 146, 476
AluI AGCT 2 cut(s) 146, 476
AlwI GGATC 2 cut(s) 57, 316
AoxI GGCC 2 cut(s) 40, 381
Asp700I GAANNNNTTC 1 cut(s) 477
AsuC2I CCSGG 2 cut(s) 27, 285
AsuHPI GGTGA 1 cut(s) 211
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 1 cut(s) 32
BclI TGATCA 1 cut(s) 162
BcnI CCSGG 2 cut(s) 27, 285
BfaI CTAG 2 cut(s) 356, 371
BglI GCCNNNNNGGC 1 cut(s) 380
Bme1390I CCNGG 2 cut(s) 27, 285
BmrFI CCNGG 2 cut(s) 27, 285
BmrI ACTGGG 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 313
BpuMI CCSGG 2 cut(s) 27, 285
BsaBI GATNNNNATC 2 cut(s) 161, 366
BsaJI CCNNGG 2 cut(s) 37, 498
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 499
Bse1I ACTGG 2 cut(s) 299, 308
Bse3DI GCAATG 1 cut(s) 99
Bse8I GATNNNNATC 2 cut(s) 161, 366
BseDI CCNNGG 2 cut(s) 37, 498
BseGI GGATG 1 cut(s) 488
BseJI GATNNNNATC 2 cut(s) 161, 366
BseLI CCNNNNNNNGG 2 cut(s) 54, 499
BseMI GCAATG 1 cut(s) 99
BseNI ACTGG 2 cut(s) 299, 308
BseYI CCCAGC 1 cut(s) 146
BshFI GGCC 2 cut(s) 42, 383
BsiSI CCGG 2 cut(s) 26, 284
BslI CCNNNNNNNGG 2 cut(s) 54, 499
BsmI GAATGC 2 cut(s) 6, 421
BsnI GGCC 2 cut(s) 42, 383
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 5 cut(s) 11, 62, 162, 237, 308
BspANI GGCC 2 cut(s) 42, 383
BspPI GGATC 2 cut(s) 57, 316
BsrDI GCAATG 1 cut(s) 99
BsrI ACTGG 2 cut(s) 299, 308
BssECI CCNNGG 2 cut(s) 37, 498
BssMI GATC 5 cut(s) 11, 62, 162, 237, 308
Bst6I CTCTTC 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 504
BstF5I GGATG 1 cut(s) 488
BstKTI GATC 5 cut(s) 14, 65, 165, 240, 311
BstMBI GATC 5 cut(s) 11, 62, 162, 237, 308
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 25, 283
BstX2I RGATCY 2 cut(s) 62, 308
BstYI RGATCY 2 cut(s) 62, 308
BsuRI GGCC 2 cut(s) 42, 383
BtsCI GGATG 1 cut(s) 488
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 277, 292
Cac8I GCNNGC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 448
CviJI RGCY 9 cut(s) 30, 42, 146, 359, 374, 383, 393, 476, 503
CviKI_1 RGCY 9 cut(s) 30, 42, 146, 359, 374, 383, 393, 476, 503
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 1 cut(s) 504
DpnI GATC 5 cut(s) 13, 64, 164, 239, 310
DpnII GATC 5 cut(s) 11, 62, 162, 237, 308
DraI TTTAAA 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 32
FbaI TGATCA 1 cut(s) 162
FokI GGATG 1 cut(s) 475
FriOI GRGCYC 1 cut(s) 32
FspBI CTAG 2 cut(s) 356, 371
GsaI CCCAGC 1 cut(s) 150
HaeIII GGCC 2 cut(s) 42, 383
HapII CCGG 2 cut(s) 26, 284
HinfI GANTC 1 cut(s) 288
HpaII CCGG 2 cut(s) 26, 284
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 331
Hpy99I CGWCG 1 cut(s) 447
HpyAV CCTTC 5 cut(s) 53, 326, 385, 475, 504
HpyCH4IV ACGT 1 cut(s) 442
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 5 cut(s) 11, 62, 162, 237, 308
LpnPI CCDG 6 cut(s) 39, 132, 280, 289, 297, 379
MaeI CTAG 2 cut(s) 356, 371
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 1 cut(s) 230
MalI GATC 5 cut(s) 13, 64, 164, 239, 310
MboI GATC 5 cut(s) 11, 62, 162, 237, 308
MboII GAAGA 3 cut(s) 72, 270, 311
MflI RGATCY 2 cut(s) 62, 308
MhlI GDGCHC 1 cut(s) 32
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 127, 241
MluNI TGGCCA 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 4 cut(s) 47, 286, 329, 476
Mox20I TGGCCA 1 cut(s) 383
MroXI GAANNNNTTC 1 cut(s) 477
MscI TGGCCA 1 cut(s) 383
MseI TTAA 4 cut(s) 90, 209, 366, 438
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 2 cut(s) 26, 284
MspR9I CCNGG 2 cut(s) 27, 285
Mva1269I GAATGC 2 cut(s) 6, 421
MwoI GCNNNNNNNGC 1 cut(s) 380
NciI CCSGG 2 cut(s) 27, 285
NdeII GATC 5 cut(s) 11, 62, 162, 237, 308
NmeAIII GCCGAG 2 cut(s) 18, 479
PctI GAATGC 2 cut(s) 6, 421
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 1 cut(s) 288
PflMI CCANNNNNTGG 1 cut(s) 54
PfoI TCCNGGA 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 146
PsuI RGATCY 2 cut(s) 62, 308
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SaqAI TTAA 4 cut(s) 90, 209, 366, 438
Sau3AI GATC 5 cut(s) 11, 62, 162, 237, 308
ScrFI CCNGG 2 cut(s) 27, 285
SduI GDGCHC 1 cut(s) 32
SetI ASST 6 cut(s) 39, 148, 227, 340, 445, 478
Sse9I AATT 2 cut(s) 127, 241
SspMI CTAG 2 cut(s) 356, 371
StyD4I CCNGG 2 cut(s) 25, 283
TaiI ACGT 1 cut(s) 445
TaqI TCGA 2 cut(s) 10, 481
TasI AATT 2 cut(s) 127, 241
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 4 cut(s) 90, 209, 366, 438
Tru9I TTAA 4 cut(s) 90, 209, 366, 438
TscAI CASTG 2 cut(s) 277, 299
TspDTI ATGAA 1 cut(s) 8
TspRI CASTG 2 cut(s) 277, 299
Van91I CCANNNNNTGG 1 cut(s) 54
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 2 cut(s) 356, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.