Rmu_sc0008279.1_g000019

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008279.1
OG0000194
Physical Location & Seq
Forward (+)
100298 .. 101281
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008279.1_g000019.1.cds

Sequence Viewer

Length: 984 bp
atgattaaggttgttgagaatccaggtacatatcttggcttgccaactgtttggggaagatcaaagaaagaggccatggtttttatcaaggaaaagattaatagaaaactggagggttggaagcagaaatatctctctcctgctgggaaagaagttttgctcaaatctgtagctttggctatcccatcctatccaatggcatgtttcaagtttcccaaaggagtttgcgaggacattaactcagccttgagtaactattggtggggttctacagattcgggtcctaagattcattggaagagctggagttatttgggcagggcaaagtctgagggcagaattgggttcagagatctgcaccattttaatctttctcttctggcaaagcaatgttggagactcttgcatgacccggattcattatgggccaaagtgcttaaggcaagatactacccgaattgtgacttcactaaggcggttaaaggtcaccgtgcttcttggggatggtcaagtttaattgaagcaagggatgtttctcttaaaggttcttgttggcaagtcatcgattgctcttctattaatatctggtctgagagatggattccccctcctaataatgggttgttagtagttaatgggactgtcccaagtaatgttcctactctggttagtgagttaattgattgggatactagaacttgggctttggatcatattcttcatatccttcaacctgaaattatcactcatattcgggctattccgatagcaagaaggggaggtcatgatcgcctaatctggccttggaacaagtctggttgctacactgtgaaatcagggtatcattggattcattcacttgactctaattcttcttctcccaccataggaccctgtctcattcaatggacccgaaatgctggaagttactttggaaactccccaccctccctaagattaaactgttcttctggaggattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

327

Amino Acids

37.03

Weight (kDa)

9.51

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 476
AclWI GGATC 1 cut(s) 717
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 617, 887
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 4 cut(s) 208, 521, 731, 905
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 173, 303
AluI AGCT 2 cut(s) 173, 303
Alw26I GTCTC 2 cut(s) 391, 902
AlwI GGATC 1 cut(s) 717
AoxI GGCC 3 cut(s) 72, 426, 800
AseI ATTAAT 2 cut(s) 99, 579
AspS9I GGNCC 4 cut(s) 281, 426, 890, 909
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 1 cut(s) 479
AvaII GGWCC 3 cut(s) 281, 890, 909
BccI CCATC 3 cut(s) 193, 498, 591
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 682
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 391, 902
BfaI CTAG 1 cut(s) 693
BfmI CTRYAG 2 cut(s) 168, 270
BfrI CTTAAG 1 cut(s) 437
BfuI GTATCC 1 cut(s) 682
BglII AGATCT 1 cut(s) 352
Bme1390I CCNGG 2 cut(s) 24, 413
Bme18I GGWCC 3 cut(s) 281, 890, 909
BmgT120I GGNCC 4 cut(s) 281, 426, 890, 909
BmiI GGNNCC 3 cut(s) 282, 892, 911
BmrFI CCNGG 2 cut(s) 24, 413
BpmI CTGGAG 2 cut(s) 131, 325
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 413
Bsa29I ATCGAT 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 75, 803
Bsc4I CCNNNNNNNGG 2 cut(s) 617, 887
Bse1I ACTGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 564
BseDI CCNNGG 2 cut(s) 75, 803
BseGI GGATG 3 cut(s) 185, 509, 535
BseLI CCNNNNNNNGG 2 cut(s) 617, 887
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 3 cut(s) 255, 321, 582
BseNI ACTGG 1 cut(s) 114
BseYI CCCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 341
BshFI GGCC 3 cut(s) 74, 428, 802
BshVI ATCGAT 1 cut(s) 564
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 2 cut(s) 629, 652
BslI CCNNNNNNNGG 2 cut(s) 617, 887
BsmAI GTCTC 2 cut(s) 391, 902
BsmFI GGGAC 2 cut(s) 629, 652
BsnI GGCC 3 cut(s) 74, 428, 802
Bsp143I GATC 4 cut(s) 59, 352, 709, 787
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 1 cut(s) 476
BspANI GGCC 3 cut(s) 74, 428, 802
BspCNI CTCAG 3 cut(s) 254, 322, 583
BspDI ATCGAT 1 cut(s) 564
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 3 cut(s) 282, 892, 911
BspPI GGATC 1 cut(s) 717
BspQI GCTCTTC 2 cut(s) 293, 577
BspTI CTTAAG 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 395
BsrI ACTGG 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 75, 803
BssMI GATC 4 cut(s) 59, 352, 709, 787
BssT1I CCWWGG 2 cut(s) 75, 803
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 5 cut(s) 49, 491, 643, 829, 965
Bst6I CTCTTC 3 cut(s) 293, 381, 577
BstAFI CTTAAG 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 6 cut(s) 241, 285, 330, 471, 591, 953
BstDSI CCRYGG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 485
BstF5I GGATG 3 cut(s) 185, 509, 535
BstKTI GATC 4 cut(s) 62, 355, 712, 790
BstMAI GTCTC 2 cut(s) 391, 902
BstMBI GATC 4 cut(s) 59, 352, 709, 787
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 204
BstPI GGTNACC 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 22, 411
BstSFI CTRYAG 2 cut(s) 168, 270
BstX2I RGATCY 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 51
BstYI RGATCY 1 cut(s) 352
Bsu15I ATCGAT 1 cut(s) 564
BsuI GTATCC 1 cut(s) 682
BsuRI GGCC 3 cut(s) 74, 428, 802
BsuTUI ATCGAT 1 cut(s) 564
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 3 cut(s) 185, 509, 535
BtsIMutI CAGTG 1 cut(s) 825
Cac8I GCNNGC 1 cut(s) 41
CciI TCATGA 1 cut(s) 784
Cfr13I GGNCC 4 cut(s) 281, 426, 890, 909
ClaI ATCGAT 1 cut(s) 564
Csp6I GTAC 1 cut(s) 27
CviAII CATG 4 cut(s) 76, 201, 407, 785
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 6 cut(s) 241, 285, 330, 471, 591, 953
DpnI GATC 4 cut(s) 61, 354, 711, 789
DpnII GATC 4 cut(s) 59, 352, 709, 787
Eam1104I CTCTTC 3 cut(s) 293, 381, 577
EarI CTCTTC 3 cut(s) 293, 381, 577
Eco130I CCWWGG 2 cut(s) 75, 803
Eco47I GGWCC 3 cut(s) 281, 890, 909
Eco91I GGTNACC 1 cut(s) 485
EcoO109I RGGNCCY 2 cut(s) 281, 890
EcoO65I GGTNACC 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 75, 803
ErhI CCWWGG 2 cut(s) 75, 803
FaeI CATG 4 cut(s) 79, 204, 410, 788
FaqI GGGAC 2 cut(s) 629, 652
FatI CATG 4 cut(s) 75, 200, 406, 784
FokI GGATG 3 cut(s) 172, 516, 542
FspBI CTAG 1 cut(s) 693
GsaI CCCAGC 1 cut(s) 147
GsuI CTGGAG 2 cut(s) 131, 325
HaeIII GGCC 3 cut(s) 74, 428, 802
HapII CCGG 1 cut(s) 413
Hin1II CATG 4 cut(s) 79, 204, 410, 788
HinfI GANTC 8 cut(s) 19, 275, 289, 399, 416, 601, 850, 863
HpaII CCGG 1 cut(s) 413
HphI GGTGA 1 cut(s) 479
Hpy188I TCNGA 4 cut(s) 331, 350, 592, 765
Hpy188III TCNNGA 2 cut(s) 785, 972
HpyAV CCTTC 2 cut(s) 737, 768
HpyCH4III ACNGT 5 cut(s) 49, 491, 643, 829, 965
HpyCH4V TGCA 2 cut(s) 358, 406
HpyF3I CTNAG 6 cut(s) 241, 285, 330, 471, 591, 953
Hsp92II CATG 4 cut(s) 79, 204, 410, 788
Kzo9I GATC 4 cut(s) 59, 352, 709, 787
LguI GCTCTTC 2 cut(s) 293, 577
MaeI CTAG 1 cut(s) 693
MaeIII GTNAC 4 cut(s) 251, 461, 485, 926
MalI GATC 4 cut(s) 61, 354, 711, 789
MboI GATC 4 cut(s) 59, 352, 709, 787
MboII GAAGA 8 cut(s) 69, 310, 368, 564, 710, 864, 867, 960
MflI RGATCY 1 cut(s) 352
MluCI AATT 6 cut(s) 339, 457, 516, 678, 738, 868
MlyI GAGTC 2 cut(s) 393, 857
MmeI TCCRAC 2 cut(s) 98, 374
MnlI CCTC 8 cut(s) 64, 106, 223, 325, 618, 773, 958, 968
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 2 cut(s) 24, 413
MvaI CCWGG 1 cut(s) 24
NciI CCSGG 1 cut(s) 413
NcoI CCATGG 1 cut(s) 75
NdeII GATC 4 cut(s) 59, 352, 709, 787
NlaIII CATG 4 cut(s) 79, 204, 410, 788
NlaIV GGNNCC 3 cut(s) 282, 892, 911
NmuCI GTSAC 2 cut(s) 461, 485
NspI RCATGY 1 cut(s) 204
PagI TCATGA 1 cut(s) 784
PciSI GCTCTTC 2 cut(s) 293, 577
PfeI GAWTC 6 cut(s) 19, 275, 289, 416, 601, 850
PflFI GACNNNGTC 1 cut(s) 894
PleI GAGTC 2 cut(s) 393, 857
PpsI GAGTC 2 cut(s) 393, 857
PpuMI RGGWCCY 2 cut(s) 281, 890
PshBI ATTAAT 2 cut(s) 99, 579
Psp5II RGGWCCY 2 cut(s) 281, 890
Psp6I CCWGG 1 cut(s) 22
PspEI GGTNACC 1 cut(s) 485
PspFI CCCAGC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 3 cut(s) 282, 892, 911
PspPI GGNCC 4 cut(s) 281, 426, 890, 909
PspPPI RGGWCCY 2 cut(s) 281, 890
PsuI RGATCY 1 cut(s) 352
PsyI GACNNNGTC 1 cut(s) 894
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SapI GCTCTTC 2 cut(s) 293, 577
Sau3AI GATC 4 cut(s) 59, 352, 709, 787
Sau96I GGNCC 4 cut(s) 281, 426, 890, 909
SchI GAGTC 2 cut(s) 393, 857
ScrFI CCNGG 2 cut(s) 24, 413
SetI ASST 8 cut(s) 12, 28, 175, 305, 487, 547, 736, 784
SfcI CTRYAG 2 cut(s) 168, 270
SinI GGWCC 3 cut(s) 281, 890, 909
SmlI CTYRAG 2 cut(s) 247, 437
SmoI CTYRAG 2 cut(s) 247, 437
Sse9I AATT 6 cut(s) 339, 457, 516, 678, 738, 868
SsiI CCGC 1 cut(s) 476
SspMI CTAG 1 cut(s) 693
StyD4I CCNGG 2 cut(s) 22, 411
StyI CCWWGG 2 cut(s) 75, 803
TaaI ACNGT 5 cut(s) 49, 491, 643, 829, 965
TaqI TCGA 1 cut(s) 564
TasI AATT 6 cut(s) 339, 457, 516, 678, 738, 868
TfiI GAWTC 6 cut(s) 19, 275, 289, 416, 601, 850
TscAI CASTG 1 cut(s) 832
TseFI GTSAC 2 cut(s) 461, 485
Tsp45I GTSAC 2 cut(s) 461, 485
TspDTI ATGAA 4 cut(s) 281, 408, 710, 842
TspRI CASTG 1 cut(s) 832
Tth111I GACNNNGTC 1 cut(s) 894
Vha464I CTTAAG 1 cut(s) 437
VpaK11BI GGWCC 3 cut(s) 281, 890, 909
VspI ATTAAT 2 cut(s) 99, 579
XceI RCATGY 1 cut(s) 204
XspI CTAG 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.