ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1065 |
| AciI | CCGC | 2 cut(s) | 600, 1035 |
| AclWI | GGATC | 1 cut(s) | 371 |
| AcsI | RAATTY | 2 cut(s) | 85, 465 |
| AcuI | CTGAAG | 1 cut(s) | 191 |
| AfaI | GTAC | 5 cut(s) | 80, 107, 336, 669, 1091 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 159, 736 |
| AflII | CTTAAG | 1 cut(s) | 473 |
| AgeI | ACCGGT | 1 cut(s) | 112 |
| AgsI | TTSAA | 8 cut(s) | 32, 204, 281, 914, 920, 988, 1120, 1128 |
| AhlI | ACTAGT | 1 cut(s) | 964 |
| AjnI | CCWGG | 1 cut(s) | 939 |
| AluBI | AGCT | 6 cut(s) | 24, 263, 478, 494, 499, 758 |
| AluI | AGCT | 6 cut(s) | 24, 263, 478, 494, 499, 758 |
| Alw21I | GWGCWC | 1 cut(s) | 688 |
| Alw26I | GTCTC | 2 cut(s) | 318, 1063 |
| AlwI | GGATC | 1 cut(s) | 371 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 512, 758 |
| ApeKI | GCWGC | 3 cut(s) | 260, 478, 923 |
| ApoI | RAATTY | 2 cut(s) | 85, 465 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 29, 61 |
| AseI | ATTAAT | 1 cut(s) | 11 |
| AsiGI | ACCGGT | 1 cut(s) | 112 |
| AspLEI | GCGC | 1 cut(s) | 152 |
| AspS9I | GGNCC | 1 cut(s) | 584 |
| AsuC2I | CCSGG | 1 cut(s) | 1015 |
| AsuHPI | GGTGA | 1 cut(s) | 527 |
| AsuII | TTCGAA | 1 cut(s) | 843 |
| AvaII | GGWCC | 1 cut(s) | 584 |
| BbsI | GAAGAC | 1 cut(s) | 1074 |
| Bbv12I | GWGCWC | 1 cut(s) | 688 |
| BbvI | GCAGC | 3 cut(s) | 272, 465, 935 |
| BccI | CCATC | 1 cut(s) | 1064 |
| BciT130I | CCWGG | 1 cut(s) | 941 |
| BcnI | CCSGG | 1 cut(s) | 1015 |
| BcoDI | GTCTC | 2 cut(s) | 318, 1063 |
| BcuI | ACTAGT | 1 cut(s) | 964 |
| BfaI | CTAG | 4 cut(s) | 198, 321, 965, 1019 |
| BfrI | CTTAAG | 1 cut(s) | 473 |
| BfuAI | ACCTGC | 1 cut(s) | 1065 |
| BisI | GCNGC | 3 cut(s) | 261, 479, 924 |
| BlpI | GCTNAGC | 1 cut(s) | 495 |
| BlsI | GCNGC | 3 cut(s) | 262, 480, 925 |
| BmcAI | AGTACT | 1 cut(s) | 336 |
| Bme1390I | CCNGG | 2 cut(s) | 941, 1015 |
| Bme18I | GGWCC | 1 cut(s) | 584 |
| BmgT120I | GGNCC | 1 cut(s) | 584 |
| BmrFI | CCNGG | 2 cut(s) | 941, 1015 |
| BmrI | ACTGGG | 1 cut(s) | 792 |
| BmsI | GCATC | 4 cut(s) | 331, 394, 549, 924 |
| BmuI | ACTGGG | 1 cut(s) | 792 |
| BpiI | GAAGAC | 1 cut(s) | 1074 |
| Bpu10I | CCTNAGC | 1 cut(s) | 63 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 495 |
| Bpu14I | TTCGAA | 1 cut(s) | 843 |
| BpuEI | CTTGAG | 1 cut(s) | 752 |
| BpuMI | CCSGG | 1 cut(s) | 1015 |
| BsaI | GGTCTC | 1 cut(s) | 1063 |
| BsaJI | CCNNGG | 1 cut(s) | 939 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 357, 387 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 159, 736 |
| Bse118I | RCCGGY | 2 cut(s) | 112, 481 |
| Bse1I | ACTGG | 3 cut(s) | 506, 724, 787 |
| Bse3DI | GCAATG | 1 cut(s) | 1008 |
| BseBI | CCWGG | 1 cut(s) | 941 |
| BseDI | CCNNGG | 1 cut(s) | 939 |
| BseGI | GGATG | 5 cut(s) | 81, 190, 417, 726, 939 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 159, 736 |
| BseMI | GCAATG | 1 cut(s) | 1008 |
| BseMII | CTCAG | 4 cut(s) | 77, 486, 905, 936 |
| BseNI | ACTGG | 3 cut(s) | 506, 724, 787 |
| BseRI | GAGGAG | 1 cut(s) | 418 |
| BseXI | GCAGC | 3 cut(s) | 272, 465, 935 |
| BsgI | GTGCAG | 1 cut(s) | 139 |
| BshTI | ACCGGT | 1 cut(s) | 112 |
| BsiHKAI | GWGCWC | 1 cut(s) | 688 |
| BsiSI | CCGG | 3 cut(s) | 113, 482, 1015 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 159, 736 |
| BsmAI | GTCTC | 2 cut(s) | 318, 1063 |
| BsmI | GAATGC | 1 cut(s) | 815 |
| Bso31I | GGTCTC | 1 cut(s) | 1063 |
| Bsp119I | TTCGAA | 1 cut(s) | 843 |
| Bsp1286I | GDGCHC | 1 cut(s) | 688 |
| Bsp143I | GATC | 2 cut(s) | 376, 907 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 495 |
| BspACI | CCGC | 2 cut(s) | 600, 1035 |
| BspCNI | CTCAG | 4 cut(s) | 76, 487, 904, 937 |
| BspMI | ACCTGC | 1 cut(s) | 1065 |
| BspPI | GGATC | 1 cut(s) | 371 |
| BspT104I | TTCGAA | 1 cut(s) | 843 |
| BspTI | CTTAAG | 1 cut(s) | 473 |
| BspTNI | GGTCTC | 1 cut(s) | 1063 |
| BsrDI | GCAATG | 1 cut(s) | 1008 |
| BsrFI | RCCGGY | 2 cut(s) | 112, 481 |
| BsrI | ACTGG | 3 cut(s) | 506, 724, 787 |
| BssAI | RCCGGY | 2 cut(s) | 112, 481 |
| BssECI | CCNNGG | 1 cut(s) | 939 |
| BssMI | GATC | 2 cut(s) | 376, 907 |
| Bst2UI | CCWGG | 1 cut(s) | 941 |
| Bst4CI | ACNGT | 3 cut(s) | 138, 683, 1124 |
| Bst6I | CTCTTC | 1 cut(s) | 735 |
| BstAFI | CTTAAG | 1 cut(s) | 473 |
| BstBI | TTCGAA | 1 cut(s) | 843 |
| BstC8I | GCNNGC | 4 cut(s) | 154, 593, 825, 872 |
| BstDEI | CTNAG | 4 cut(s) | 63, 495, 891, 945 |
| BstF5I | GGATG | 5 cut(s) | 81, 190, 417, 726, 939 |
| BstHHI | GCGC | 1 cut(s) | 152 |
| BstKTI | GATC | 2 cut(s) | 379, 910 |
| BstMAI | GTCTC | 2 cut(s) | 318, 1063 |
| BstMBI | GATC | 2 cut(s) | 376, 907 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 478, 1024 |
| BstNI | CCWGG | 1 cut(s) | 941 |
| BstNSI | RCATGY | 4 cut(s) | 595, 696, 827, 874 |
| BstSCI | CCNGG | 2 cut(s) | 939, 1013 |
| BstV1I | GCAGC | 3 cut(s) | 272, 465, 935 |
| BstV2I | GAAGAC | 1 cut(s) | 1074 |
| BtsCI | GGATG | 5 cut(s) | 81, 190, 417, 726, 939 |
| BtsIMutI | CAGTG | 1 cut(s) | 679 |
| BveI | ACCTGC | 1 cut(s) | 1065 |
| Cac8I | GCNNGC | 4 cut(s) | 154, 593, 825, 872 |
| CaiI | CAGNNNCTG | 2 cut(s) | 512, 758 |
| CfoI | GCGC | 1 cut(s) | 152 |
| Cfr10I | RCCGGY | 2 cut(s) | 112, 481 |
| Cfr13I | GGNCC | 1 cut(s) | 584 |
| Csp6I | GTAC | 5 cut(s) | 79, 106, 335, 668, 1090 |
| CspAI | ACCGGT | 1 cut(s) | 112 |
| CviAII | CATG | 7 cut(s) | 539, 588, 592, 693, 824, 871, 982 |
| CviQI | GTAC | 5 cut(s) | 79, 106, 335, 668, 1090 |
| DdeI | CTNAG | 4 cut(s) | 63, 495, 891, 945 |
| DpnI | GATC | 2 cut(s) | 378, 909 |
| DpnII | GATC | 2 cut(s) | 376, 907 |
| Eam1104I | CTCTTC | 1 cut(s) | 735 |
| EarI | CTCTTC | 1 cut(s) | 735 |
| Eco31I | GGTCTC | 1 cut(s) | 1063 |
| Eco32I | GATATC | 1 cut(s) | 215 |
| Eco47I | GGWCC | 1 cut(s) | 584 |
| Eco57I | CTGAAG | 1 cut(s) | 191 |
| EcoRII | CCWGG | 1 cut(s) | 939 |
| EcoRV | GATATC | 1 cut(s) | 215 |
| EcoT22I | ATGCAT | 2 cut(s) | 593, 1010 |
| FaeI | CATG | 7 cut(s) | 542, 591, 595, 696, 827, 874, 985 |
| FatI | CATG | 7 cut(s) | 538, 587, 591, 692, 823, 870, 981 |
| FauI | CCCGC | 1 cut(s) | 607 |
| Fnu4HI | GCNGC | 3 cut(s) | 261, 479, 924 |
| FokI | GGATG | 5 cut(s) | 88, 177, 404, 713, 946 |
| Fsp4HI | GCNGC | 3 cut(s) | 261, 479, 924 |
| FspBI | CTAG | 4 cut(s) | 198, 321, 965, 1019 |
| GlaI | GCGC | 1 cut(s) | 151 |
| GluI | GCNGC | 3 cut(s) | 261, 479, 924 |
| HapII | CCGG | 3 cut(s) | 113, 482, 1015 |
| HhaI | GCGC | 1 cut(s) | 152 |
| Hin1II | CATG | 7 cut(s) | 542, 591, 595, 696, 827, 874, 985 |
| Hin6I | GCGC | 1 cut(s) | 150 |
| HinP1I | GCGC | 1 cut(s) | 150 |
| HincII | GTYRAC | 1 cut(s) | 222 |
| HindII | GTYRAC | 1 cut(s) | 222 |
| HinfI | GANTC | 5 cut(s) | 163, 574, 734, 889, 977 |
| HpaII | CCGG | 3 cut(s) | 113, 482, 1015 |
| HphI | GGTGA | 1 cut(s) | 527 |
| Hpy166II | GTNNAC | 2 cut(s) | 93, 222 |
| Hpy188I | TCNGA | 5 cut(s) | 55, 171, 739, 853, 894 |
| Hpy188III | TCNNGA | 5 cut(s) | 380, 578, 706, 911, 988 |
| Hpy8I | GTNNAC | 2 cut(s) | 93, 222 |
| Hpy99I | CGWCG | 1 cut(s) | 1103 |
| HpyAV | CCTTC | 6 cut(s) | 166, 204, 454, 515, 575, 985 |
| HpyCH4III | ACNGT | 3 cut(s) | 138, 683, 1124 |
| HpyCH4IV | ACGT | 1 cut(s) | 1098 |
| HpyCH4V | TGCA | 8 cut(s) | 156, 260, 302, 401, 542, 591, 870, 1008 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 478, 1024 |
| HpyF3I | CTNAG | 4 cut(s) | 63, 495, 891, 945 |
| HpySE526I | ACGT | 1 cut(s) | 1098 |
| Hsp92II | CATG | 7 cut(s) | 542, 591, 595, 696, 827, 874, 985 |
| HspAI | GCGC | 1 cut(s) | 150 |
| Kzo9I | GATC | 2 cut(s) | 376, 907 |
| LmnI | GCTCC | 3 cut(s) | 691, 755, 955 |
| Lsp1109I | GCAGC | 3 cut(s) | 272, 465, 935 |
| LweI | GCATC | 4 cut(s) | 331, 394, 549, 924 |
| MaeI | CTAG | 4 cut(s) | 198, 321, 965, 1019 |
| MaeII | ACGT | 1 cut(s) | 1098 |
| MaeIII | GTNAC | 1 cut(s) | 1028 |
| MalI | GATC | 2 cut(s) | 378, 909 |
| MboI | GATC | 2 cut(s) | 376, 907 |
| MboII | GAAGA | 5 cut(s) | 171, 752, 986, 1035, 1074 |
| MfeI | CAATTG | 1 cut(s) | 439 |
| MhlI | GDGCHC | 1 cut(s) | 688 |
| MluCI | AATT | 5 cut(s) | 85, 439, 465, 915, 1129 |
| MlyI | GAGTC | 2 cut(s) | 743, 883 |
| MmeI | TCCRAC | 2 cut(s) | 223, 717 |
| MnlI | CCTC | 9 cut(s) | 66, 177, 239, 431, 439, 445, 542, 649, 769 |
| Mph1103I | ATGCAT | 2 cut(s) | 593, 1010 |
| MseI | TTAA | 4 cut(s) | 11, 474, 516, 771 |
| MspA1I | CMGCKG | 1 cut(s) | 263 |
| MspCI | CTTAAG | 1 cut(s) | 473 |
| MspI | CCGG | 3 cut(s) | 113, 482, 1015 |
| MspR9I | CCNGG | 2 cut(s) | 941, 1015 |
| MunI | CAATTG | 1 cut(s) | 439 |
| Mva1269I | GAATGC | 1 cut(s) | 815 |
| MvaI | CCWGG | 1 cut(s) | 941 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 478, 1024 |
| NciI | CCSGG | 1 cut(s) | 1015 |
| NdeII | GATC | 2 cut(s) | 376, 907 |
| NlaIII | CATG | 7 cut(s) | 542, 591, 595, 696, 827, 874, 985 |
| NsiI | ATGCAT | 2 cut(s) | 593, 1010 |
| NspI | RCATGY | 4 cut(s) | 595, 696, 827, 874 |
| NspV | TTCGAA | 1 cut(s) | 843 |
| PaeI | GCATGC | 3 cut(s) | 595, 827, 874 |
| PctI | GAATGC | 1 cut(s) | 815 |
| PfeI | GAWTC | 3 cut(s) | 163, 574, 977 |
| PinAI | ACCGGT | 1 cut(s) | 112 |
| PkrI | GCNGC | 3 cut(s) | 262, 480, 925 |
| PleI | GAGTC | 2 cut(s) | 742, 883 |
| PpsI | GAGTC | 2 cut(s) | 742, 883 |
| PshBI | ATTAAT | 1 cut(s) | 11 |
| Psp6I | CCWGG | 1 cut(s) | 939 |
| PspGI | CCWGG | 1 cut(s) | 939 |
| PspPI | GGNCC | 1 cut(s) | 584 |
| PstNI | CAGNNNCTG | 2 cut(s) | 512, 758 |
| PvuII | CAGCTG | 1 cut(s) | 263 |
| RsaI | GTAC | 5 cut(s) | 80, 107, 336, 669, 1091 |
| RsaNI | GTAC | 5 cut(s) | 79, 106, 335, 668, 1090 |
| SaqAI | TTAA | 4 cut(s) | 11, 474, 516, 771 |
| SatI | GCNGC | 3 cut(s) | 261, 479, 924 |
| Sau3AI | GATC | 2 cut(s) | 376, 907 |
| Sau96I | GGNCC | 1 cut(s) | 584 |
| ScaI | AGTACT | 1 cut(s) | 336 |
| SchI | GAGTC | 2 cut(s) | 743, 883 |
| ScrFI | CCNGG | 2 cut(s) | 941, 1015 |
| SduI | GDGCHC | 1 cut(s) | 688 |
| SfaNI | GCATC | 4 cut(s) | 331, 394, 549, 924 |
| SfuI | TTCGAA | 1 cut(s) | 843 |
| SinI | GGWCC | 1 cut(s) | 584 |
| SmlI | CTYRAG | 2 cut(s) | 473, 731 |
| SmoI | CTYRAG | 2 cut(s) | 473, 731 |
| SpeI | ACTAGT | 1 cut(s) | 964 |
| SphI | GCATGC | 3 cut(s) | 595, 827, 874 |
| Sse9I | AATT | 5 cut(s) | 85, 439, 465, 915, 1129 |
| SsiI | CCGC | 2 cut(s) | 600, 1035 |
| SspMI | CTAG | 4 cut(s) | 198, 321, 965, 1019 |
| StyD4I | CCNGG | 2 cut(s) | 939, 1013 |
| TaaI | ACNGT | 3 cut(s) | 138, 683, 1124 |
| TaiI | ACGT | 1 cut(s) | 1101 |
| TaqI | TCGA | 4 cut(s) | 35, 843, 887, 1068 |
| TasI | AATT | 5 cut(s) | 85, 439, 465, 915, 1129 |
| TatI | WGTACW | 3 cut(s) | 78, 334, 1089 |
| TfiI | GAWTC | 3 cut(s) | 163, 574, 977 |
| Tru1I | TTAA | 4 cut(s) | 11, 474, 516, 771 |
| Tru9I | TTAA | 4 cut(s) | 11, 474, 516, 771 |
| TscAI | CASTG | 1 cut(s) | 686 |
| TseI | GCWGC | 3 cut(s) | 260, 478, 923 |
| TspDTI | ATGAA | 2 cut(s) | 171, 715 |
| TspGWI | ACGGA | 1 cut(s) | 809 |
| TspRI | CASTG | 1 cut(s) | 686 |
| Vha464I | CTTAAG | 1 cut(s) | 473 |
| VpaK11BI | GGWCC | 1 cut(s) | 584 |
| VspI | ATTAAT | 1 cut(s) | 11 |
| XapI | RAATTY | 2 cut(s) | 85, 465 |
| XceI | RCATGY | 4 cut(s) | 595, 696, 827, 874 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 445 |
| XspI | CTAG | 4 cut(s) | 198, 321, 965, 1019 |
| ZrmI | AGTACT | 1 cut(s) | 336 |
| Zsp2I | ATGCAT | 2 cut(s) | 593, 1010 |