RchiOBHm_Chr7g0210911

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000194
Physical Location & Seq
Forward (+)
28275219 .. 28276009
791 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18872

Sequence Viewer

Length: 735 bp
ATGTTATACCCTCAGCTAGTCAACTCTTTAATTGATTGGGATCTGCATACTTGGTCACTTGACCAGATAGCTCACTTGCTACTGCCTAGCCAGTTGAGGCTGATAACTTCTATTCAGATAGGGGATGGTCAGGGTTCTGATCGATTAATCTGGCCATGGAGTAGGAATGGGTATTGCTCAGTCAAATTTGGGTATCACTGGATACATTCTAACAGGCATAAGGCAATCACTTGCTCCAAGCATACATCACATATAGGAGAGAAGTTCGTGTGGAAATTGGTTTGGAAGATTGACACTTTGACAAAGGTTAAAAACTTCCTTTGGAGAGCAATTTCTGGGGCTATTCCTACTTTACTCAACCTTCATCGAAGGAAAGTGTGCCCATCCCCTATATGTCCTATCTGTGGTGAATTTGAAGAATCTATTGAACACTCCCTTCTACTATGTTCATGGGTAGATTTGGTTTGGTTTGGATCGCCCTTGGGACTCAGACTTGATAAAAAGAGTGTAACTACTCTAGATTCATGGTTATCAAGCATCAACAATTGCACCACTACGGGAACAGAAAAAGAGAGGCTACTTACTTGGATTAGCTTTCTCTGTTGGAAGATATGGACTGCTAGATGTGACTTCATTTACCGTTGGGAGGCTTTGTCACCACAGAAGGTAATATGTGATGGTGTTAAACTGGCAAATGAGTTCTGGGGAGCTAGAAGCTTGTGTAATACCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

244

Amino Acids

28.23

Weight (kDa)

8.87

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 86 - 156 4.3e-14 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 48, 481
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 2 cut(s) 185, 410
AfiI CCNNNNNNNGG 2 cut(s) 404, 646
AgsI TTSAA 2 cut(s) 416, 428
AluBI AGCT 5 cut(s) 16, 71, 594, 710, 717
AluI AGCT 5 cut(s) 16, 71, 594, 710, 717
AlwI GGATC 2 cut(s) 48, 481
AoxI GGCC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 185, 410
AseI ATTAAT 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 419, 648
BaeGI GKGCMC 1 cut(s) 383
BalI TGGCCA 1 cut(s) 154
BbvCI CCTCAGC 1 cut(s) 12
BccI CCATC 3 cut(s) 119, 391, 671
BciVI GTATCC 1 cut(s) 195
BfaI CTAG 5 cut(s) 17, 87, 518, 621, 711
BfuI GTATCC 1 cut(s) 195
BmsI GCATC 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 155, 480
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 646
Bse1I ACTGG 3 cut(s) 91, 203, 693
Bse8I GATNNNNATC 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 155, 480
BseGI GGATG 2 cut(s) 130, 383
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 404, 646
BseMII CTCAG 3 cut(s) 26, 192, 502
BseNI ACTGG 3 cut(s) 91, 203, 693
BseSI GKGCMC 1 cut(s) 383
BshFI GGCC 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 142
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 2 cut(s) 404, 646
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 383
Bsp143I GATC 3 cut(s) 40, 139, 473
Bsp19I CCATGG 1 cut(s) 155
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 3 cut(s) 25, 191, 501
BspDI ATCGAT 1 cut(s) 142
BspPI GGATC 2 cut(s) 48, 481
BsrI ACTGG 3 cut(s) 91, 203, 693
BssECI CCNNGG 2 cut(s) 155, 480
BssMI GATC 3 cut(s) 40, 139, 473
BssT1I CCWWGG 2 cut(s) 155, 480
Bst4CI ACNGT 1 cut(s) 641
BstDEI CTNAG 4 cut(s) 12, 178, 488, 732
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 130, 383
BstKTI GATC 3 cut(s) 43, 142, 476
BstMBI GATC 3 cut(s) 40, 139, 473
BstSLI GKGCMC 1 cut(s) 383
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
Bsu15I ATCGAT 1 cut(s) 142
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 154
BsuTUI ATCGAT 1 cut(s) 142
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 2 cut(s) 130, 383
BtsIMutI CAGTG 1 cut(s) 196
ClaI ATCGAT 1 cut(s) 142
CviAII CATG 3 cut(s) 156, 450, 525
DdeI CTNAG 4 cut(s) 12, 178, 488, 732
DpnI GATC 3 cut(s) 42, 141, 475
DpnII GATC 3 cut(s) 40, 139, 473
EaeI YGGCCR 1 cut(s) 152
Eco130I CCWWGG 2 cut(s) 155, 480
EcoT14I CCWWGG 2 cut(s) 155, 480
ErhI CCWWGG 2 cut(s) 155, 480
FaeI CATG 3 cut(s) 159, 453, 528
FaqI GGGAC 1 cut(s) 498
FatI CATG 3 cut(s) 155, 449, 524
FokI GGATG 2 cut(s) 137, 370
FspBI CTAG 5 cut(s) 17, 87, 518, 621, 711
HaeIII GGCC 1 cut(s) 154
Hin1II CATG 3 cut(s) 159, 453, 528
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 715
HinfI GANTC 3 cut(s) 419, 486, 521
HphI GGTGA 2 cut(s) 419, 648
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 3 cut(s) 117, 139, 491
Hpy188III TCNNGA 1 cut(s) 518
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 4 cut(s) 363, 371, 446, 658
HpyCH4III ACNGT 1 cut(s) 641
HpyCH4V TGCA 2 cut(s) 46, 549
HpyF3I CTNAG 4 cut(s) 12, 178, 488, 732
Hsp92II CATG 3 cut(s) 159, 453, 528
Kzo9I GATC 3 cut(s) 40, 139, 473
LmnI GCTCC 2 cut(s) 239, 707
LpnPI CCDG 9 cut(s) 77, 104, 116, 136, 184, 199, 321, 674, 688
LweI GCATC 1 cut(s) 546
MaeI CTAG 5 cut(s) 17, 87, 518, 621, 711
MaeIII GTNAC 4 cut(s) 54, 508, 626, 654
MalI GATC 3 cut(s) 42, 141, 475
MboI GATC 3 cut(s) 40, 139, 473
MboII GAAGA 3 cut(s) 298, 428, 619
MfeI CAATTG 1 cut(s) 544
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 383
MlsI TGGCCA 1 cut(s) 154
MluCI AATT 6 cut(s) 30, 185, 275, 330, 410, 544
MluNI TGGCCA 1 cut(s) 154
MlyI GAGTC 1 cut(s) 480
MmeI TCCRAC 1 cut(s) 584
MnlI CCTC 4 cut(s) 21, 90, 567, 640
Mox20I TGGCCA 1 cut(s) 154
MscI TGGCCA 1 cut(s) 154
MseI TTAA 4 cut(s) 29, 146, 309, 684
Msp20I TGGCCA 1 cut(s) 154
MunI CAATTG 1 cut(s) 544
NcoI CCATGG 1 cut(s) 155
NdeII GATC 3 cut(s) 40, 139, 473
NlaIII CATG 3 cut(s) 159, 453, 528
NmuCI GTSAC 3 cut(s) 54, 626, 654
PfeI GAWTC 2 cut(s) 419, 521
PleI GAGTC 1 cut(s) 480
PpsI GAGTC 1 cut(s) 480
PshBI ATTAAT 1 cut(s) 146
PsuI RGATCY 1 cut(s) 40
SaqAI TTAA 4 cut(s) 29, 146, 309, 684
Sau3AI GATC 3 cut(s) 40, 139, 473
SchI GAGTC 1 cut(s) 480
SduI GDGCHC 1 cut(s) 383
SetI ASST 8 cut(s) 18, 73, 309, 363, 596, 669, 712, 719
SfaNI GCATC 1 cut(s) 546
Sse9I AATT 6 cut(s) 30, 185, 275, 330, 410, 544
SspMI CTAG 5 cut(s) 17, 87, 518, 621, 711
StyI CCWWGG 2 cut(s) 155, 480
TaaI ACNGT 1 cut(s) 641
TaqI TCGA 2 cut(s) 142, 367
TasI AATT 6 cut(s) 30, 185, 275, 330, 410, 544
TfiI GAWTC 2 cut(s) 419, 521
Tru1I TTAA 4 cut(s) 29, 146, 309, 684
Tru9I TTAA 4 cut(s) 29, 146, 309, 684
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 3 cut(s) 54, 626, 654
Tsp45I GTSAC 3 cut(s) 54, 626, 654
TspDTI ATGAA 4 cut(s) 353, 438, 513, 622
TspRI CASTG 1 cut(s) 203
VspI ATTAAT 1 cut(s) 146
XapI RAATTY 2 cut(s) 185, 410
XbaI TCTAGA 1 cut(s) 517
XspI CTAG 5 cut(s) 17, 87, 518, 621, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.