Rmu_sc0034436.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034436.1
OG0000194
Physical Location & Seq
Forward (+)
2264 .. 2701
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034436.1_g000002.1.cds

Sequence Viewer

Length: 438 bp
atggtggacaattcgggtatctaccttgggcttcctgcaatttggggtaggtcaaagaaggaagctttatcttacatcagggagagggttagtacgaaaattgaggggtggaaacctagttcactctctactaccggcaaagaagtcccaatcatattagtagctatggctgtacccacctaccttatggcctgcttcaaattcccaaagaaaatctatgatgatgtcaattcggttctcagtaacttttggtggggttctaacgagtcaagcgacaagatccacaagaagcgctgggatcacttaggaaaacttaaaaatgagggaggactgggctttcgtgacctctatcactttaaccttgcctttttggcaaaacagtgttggcgcctcatccaacaacctgacactatttgggccaaagttcccaggatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

145

Amino Acids

16.71

Weight (kDa)

9.67

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 387
AclWI GGATC 2 cut(s) 274, 306
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 388
AfaI GTAC 2 cut(s) 94, 174
AfeI AGCGCT 1 cut(s) 293
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 428
AloI GAACNNNNNNTCC 2 cut(s) 103, 135
AluBI AGCT 2 cut(s) 65, 164
AluI AGCT 2 cut(s) 65, 164
AlwI GGATC 2 cut(s) 274, 306
Aor51HI AGCGCT 1 cut(s) 293
AoxI GGCC 2 cut(s) 189, 417
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AspLEI GCGC 2 cut(s) 294, 390
AspS9I GGNCC 1 cut(s) 417
BanI GGYRCC 1 cut(s) 387
BciT130I CCWGG 1 cut(s) 430
BfaI CTAG 1 cut(s) 117
BfoI RGCGCY 2 cut(s) 295, 391
BglI GCCNNNNNGGC 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 417
BmiI GGNNCC 1 cut(s) 389
BmrFI CCNGG 1 cut(s) 430
BmrI ACTGGG 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 25, 428
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 2 cut(s) 25, 428
BseGI GGATG 2 cut(s) 393, 438
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 336
BseYI CCCAGC 1 cut(s) 294
BshFI GGCC 2 cut(s) 191, 419
BshNI GGYRCC 1 cut(s) 387
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 2 cut(s) 191, 419
Bsp143I GATC 2 cut(s) 279, 298
BspANI GGCC 2 cut(s) 191, 419
BspCNI CTCAG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 389
BspPI GGATC 2 cut(s) 274, 306
BspT107I GGYRCC 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 25, 428
BssMI GATC 2 cut(s) 279, 298
BssNI GRCGYC 1 cut(s) 388
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 1 cut(s) 381
BstACI GRCGYC 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 239, 304
BstF5I GGATG 2 cut(s) 393, 438
BstH2I RGCGCY 2 cut(s) 295, 391
BstHHI GCGC 2 cut(s) 294, 390
BstKTI GATC 2 cut(s) 282, 301
BstMBI GATC 2 cut(s) 279, 298
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BsuRI GGCC 2 cut(s) 191, 419
BtsCI GGATG 2 cut(s) 393, 438
BtsIMutI CAGTG 1 cut(s) 386
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 2 cut(s) 294, 390
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 417
Csp6I GTAC 2 cut(s) 93, 173
CviJI RGCY 7 cut(s) 31, 65, 164, 170, 191, 336, 419
CviKI_1 RGCY 7 cut(s) 31, 65, 164, 170, 191, 336, 419
CviQI GTAC 2 cut(s) 93, 173
DdeI CTNAG 2 cut(s) 239, 304
DinI GGCGCC 1 cut(s) 389
DpnI GATC 2 cut(s) 281, 300
DpnII GATC 2 cut(s) 279, 298
Eco130I CCWWGG 1 cut(s) 25
Eco47III AGCGCT 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 25
EgeI GGCGCC 1 cut(s) 389
EheI GGCGCC 1 cut(s) 389
ErhI CCWWGG 1 cut(s) 25
FaiI YATR 4 cut(s) 155, 167, 188, 219
FaqI GGGAC 1 cut(s) 131
FokI GGATG 1 cut(s) 380
FspBI CTAG 1 cut(s) 117
GlaI GCGC 2 cut(s) 293, 389
GsaI CCCAGC 1 cut(s) 298
HaeII RGCGCY 2 cut(s) 295, 391
HaeIII GGCC 2 cut(s) 191, 419
HapII CCGG 1 cut(s) 135
HhaI GCGC 2 cut(s) 294, 390
Hin1I GRCGYC 1 cut(s) 388
Hin6I GCGC 2 cut(s) 292, 388
HinP1I GCGC 2 cut(s) 292, 388
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 266
HpaII CCGG 1 cut(s) 135
Hpy166II GTNNAC 2 cut(s) 7, 122
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 2 cut(s) 7, 122
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 2 cut(s) 239, 304
Hsp92I GRCGYC 1 cut(s) 388
HspAI GCGC 2 cut(s) 292, 388
KasI GGCGCC 1 cut(s) 387
Kzo9I GATC 2 cut(s) 279, 298
LpnPI CCDG 8 cut(s) 48, 64, 148, 205, 280, 317, 415, 417
MaeI CTAG 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 242, 341
MalI GATC 2 cut(s) 281, 300
MboI GATC 2 cut(s) 279, 298
MflI RGATCY 1 cut(s) 279
MluCI AATT 5 cut(s) 10, 39, 99, 200, 229
Mly113I GGCGCC 1 cut(s) 388
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 6 cut(s) 78, 97, 316, 320, 356, 401
MseI TTAA 2 cut(s) 315, 357
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 430
MvaI CCWGG 1 cut(s) 430
MwoI GCNNNNNNNGC 1 cut(s) 371
NarI GGCGCC 1 cut(s) 388
NdeII GATC 2 cut(s) 279, 298
NlaIV GGNNCC 1 cut(s) 389
NmuCI GTSAC 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PleI GAGTC 1 cut(s) 274
PluTI GGCGCC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 428
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 389
PspPI GGNCC 1 cut(s) 417
PsuI RGATCY 1 cut(s) 279
RsaI GTAC 2 cut(s) 94, 174
RsaNI GTAC 2 cut(s) 93, 173
SaqAI TTAA 2 cut(s) 315, 357
Sau3AI GATC 2 cut(s) 279, 298
Sau96I GGNCC 1 cut(s) 417
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 430
SfoI GGCGCC 1 cut(s) 389
Sse9I AATT 5 cut(s) 10, 39, 99, 200, 229
SspDI GGCGCC 1 cut(s) 387
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 428
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 381
TasI AATT 5 cut(s) 10, 39, 99, 200, 229
Tru1I TTAA 2 cut(s) 315, 357
Tru9I TTAA 2 cut(s) 315, 357
TscAI CASTG 1 cut(s) 386
TseFI GTSAC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 341
TspRI CASTG 1 cut(s) 386
XapI RAATTY 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.